RLG00000000933

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0005641
Physical Location & Seq
Reverse (-)
8145836 .. 8147324
1489 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000000933

Sequence Viewer

Length: 663 bp
ATGGCCATGTCCATCAGAACAATCACAACAACAACAGCTCTTACTCCCAGCAATTCTAGATCATCACTACTTCATCGCCACCTCAGATTAAACCAGAGGGATTCATGTCGTTTTCTCGGAAACCAGAGCTTGCGATCATGCAATACGAGCCTTCAGAGAGTTCAGATTGGCAGCAAGATCCTGCTAATGGTGGTCAACGGCGTTGACCCCGGCACCCCTCCTCTTCCTTCCGATCCTTCCGGTGGTTCTTGGAAAATGTGGCTTTTGGGTGTACTTTTCTCACTAATTATACCCTTTACGAAGAACAAATGGTACCCATTACTCACGTTGAAAGACCGAGTGGAGAGAGCGATGGATGCCGCAGAAGAAGTGGCGGAGCTCGTGGAGAAGGTGTCCGAGAAAGTGGAGGAGGTCGCGGATGATATCGGCAATCATCTTCCCGAAGGTAAACTTCGACATGCTGCCATGCTTGTGGAGGAATTAGCTGACAAAACAGGCAAGGCTGCAGCCATGGCGGATGATATCATTGAGAAGGTTGAGGAAGTGGAGAAAGAGGTAGACTCCGTCTTTGACAAGGCCAATGAGAAAAGGAAAGAAGACAAAATCAAAGACGCGAGTACCAAGCCAGATAATAGCATTGAAAATGAGACAATTGCAAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

221

Amino Acids

24.44

Weight (kDa)

5.52

Isoelectric Point (pI)

45.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 312
AccB1I GGYRCC 2 cut(s) 212, 312
AccI GTMKAC 1 cut(s) 558
AccII CGCG 2 cut(s) 416, 614
AciI CCGC 4 cut(s) 360, 374, 416, 515
AclWI GGATC 2 cut(s) 172, 227
AcoI YGGCCR 1 cut(s) 3
AcuI CTGAAG 1 cut(s) 137
AfaI GTAC 3 cut(s) 273, 314, 619
AfiI CCNNNNNNNGG 2 cut(s) 187, 242
AgsI TTSAA 2 cut(s) 331, 641
AluBI AGCT 4 cut(s) 38, 129, 379, 485
AluI AGCT 4 cut(s) 38, 129, 379, 485
Alw21I GWGCWC 1 cut(s) 381
Alw26I GTCTC 1 cut(s) 641
AlwI GGATC 2 cut(s) 172, 227
AoxI GGCC 2 cut(s) 3, 576
ApeKI GCWGC 4 cut(s) 171, 461, 503, 506
ArsI GACNNNNNNTTYG 2 cut(s) 551, 583
Asp718I GGTACC 1 cut(s) 312
AsuC2I CCSGG 1 cut(s) 210
BaeI ACNNNNGTAYC 2 cut(s) 601, 634
BalI TGGCCA 1 cut(s) 5
BanI GGYRCC 2 cut(s) 212, 312
BanII GRGCYC 1 cut(s) 381
BauI CACGAG 1 cut(s) 380
BbsI GAAGAC 1 cut(s) 603
Bbv12I GWGCWC 1 cut(s) 381
BbvI GCAGC 4 cut(s) 183, 448, 490, 518
BccI CCATC 2 cut(s) 20, 346
BceAI ACGGC 1 cut(s) 214
BcnI CCSGG 1 cut(s) 210
BcoDI GTCTC 1 cut(s) 641
BfaI CTAG 1 cut(s) 57
BfmI CTRYAG 1 cut(s) 504
BisI GCNGC 5 cut(s) 172, 360, 462, 504, 507
BlsI GCNGC 5 cut(s) 173, 361, 463, 505, 508
Bme1390I CCNGG 1 cut(s) 210
BmiI GGNNCC 2 cut(s) 214, 314
BmrFI CCNGG 1 cut(s) 210
BmsI GCATC 1 cut(s) 346
BpiI GAAGAC 1 cut(s) 603
BplI GAGNNNNNCTC 2 cut(s) 545, 577
BpuMI CCSGG 1 cut(s) 210
BsaJI CCNNGG 2 cut(s) 208, 510
BsaWI WCCGGW 1 cut(s) 239
BsaXI ACNNNNNCTCC 2 cut(s) 377, 407
Bsc4I CCNNNNNNNGG 2 cut(s) 187, 242
BseDI CCNNGG 2 cut(s) 208, 510
BseGI GGATG 3 cut(s) 361, 424, 523
BseLI CCNNNNNNNGG 2 cut(s) 187, 242
BseMII CTCAG 1 cut(s) 97
BseRI GAGGAG 2 cut(s) 210, 422
BseXI GCAGC 4 cut(s) 183, 448, 490, 518
BseYI CCCAGC 1 cut(s) 47
Bsh1236I CGCG 2 cut(s) 416, 614
BshFI GGCC 2 cut(s) 5, 578
BshNI GGYRCC 2 cut(s) 212, 312
BsiHKAI GWGCWC 1 cut(s) 381
BsiSI CCGG 2 cut(s) 210, 240
BslI CCNNNNNNNGG 2 cut(s) 187, 242
BsmAI GTCTC 1 cut(s) 641
BsnI GGCC 2 cut(s) 5, 578
Bsp1286I GDGCHC 1 cut(s) 381
Bsp143I GATC 4 cut(s) 59, 134, 177, 232
Bsp19I CCATGG 1 cut(s) 510
BspACI CCGC 4 cut(s) 360, 374, 416, 515
BspANI GGCC 2 cut(s) 5, 578
BspCNI CTCAG 1 cut(s) 96
BspFNI CGCG 2 cut(s) 416, 614
BspLI GGNNCC 2 cut(s) 214, 314
BspMAI CTGCAG 1 cut(s) 508
BspPI GGATC 2 cut(s) 172, 227
BspT107I GGYRCC 2 cut(s) 212, 312
BssECI CCNNGG 2 cut(s) 208, 510
BssMI GATC 4 cut(s) 59, 134, 177, 232
BssSI CACGAG 1 cut(s) 380
BssT1I CCWWGG 1 cut(s) 510
Bst2BI CACGAG 1 cut(s) 380
Bst6I CTCTTC 1 cut(s) 228
BstC8I GCNNGC 1 cut(s) 131
BstDEI CTNAG 1 cut(s) 83
BstDSI CCRYGG 1 cut(s) 510
BstF5I GGATG 3 cut(s) 361, 424, 523
BstFNI CGCG 2 cut(s) 416, 614
BstKTI GATC 4 cut(s) 62, 137, 180, 235
BstMAI GTCTC 1 cut(s) 641
BstMBI GATC 4 cut(s) 59, 134, 177, 232
BstMWI GCNNNNNNNGC 3 cut(s) 147, 356, 512
BstNSI RCATGY 1 cut(s) 461
BstSCI CCNGG 1 cut(s) 208
BstSFI CTRYAG 1 cut(s) 504
BstUI CGCG 2 cut(s) 416, 614
BstV1I GCAGC 4 cut(s) 183, 448, 490, 518
BstV2I GAAGAC 1 cut(s) 603
BstX2I RGATCY 1 cut(s) 177
BstXI CCANNNNNNTGG 1 cut(s) 472
BstYI RGATCY 1 cut(s) 177
BsuRI GGCC 2 cut(s) 5, 578
BtgI CCRYGG 1 cut(s) 510
BtgZI GCGATG 2 cut(s) 59, 365
BtsCI GGATG 3 cut(s) 361, 424, 523
Cac8I GCNNGC 1 cut(s) 131
CseI GACGC 1 cut(s) 620
Csp6I GTAC 3 cut(s) 272, 313, 618
CviAII CATG 6 cut(s) 7, 105, 138, 458, 466, 511
CviQI GTAC 3 cut(s) 272, 313, 618
DdeI CTNAG 1 cut(s) 83
DpnI GATC 4 cut(s) 61, 136, 179, 234
DpnII GATC 4 cut(s) 59, 134, 177, 232
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 1 cut(s) 228
EarI CTCTTC 1 cut(s) 228
EciI GGCGGA 2 cut(s) 389, 530
Ecl136II GAGCTC 1 cut(s) 379
Eco130I CCWWGG 1 cut(s) 510
Eco24I GRGCYC 1 cut(s) 381
Eco32I GATATC 2 cut(s) 424, 523
Eco53kI GAGCTC 1 cut(s) 379
Eco57I CTGAAG 1 cut(s) 137
EcoICRI GAGCTC 1 cut(s) 379
EcoRV GATATC 2 cut(s) 424, 523
EcoT14I CCWWGG 1 cut(s) 510
EcoT38I GRGCYC 1 cut(s) 381
ErhI CCWWGG 1 cut(s) 510
FaeI CATG 6 cut(s) 10, 108, 141, 461, 469, 514
FaiI YATR 7 cut(s) 8, 106, 139, 290, 459, 467, 512
FalI AAGNNNNNCTT 2 cut(s) 435, 467
FatI CATG 6 cut(s) 6, 104, 137, 457, 465, 510
FblI GTMKAC 1 cut(s) 558
Fnu4HI GCNGC 5 cut(s) 172, 360, 462, 504, 507
FokI GGATG 3 cut(s) 368, 431, 530
FriOI GRGCYC 1 cut(s) 381
Fsp4HI GCNGC 5 cut(s) 172, 360, 462, 504, 507
FspBI CTAG 1 cut(s) 57
GluI GCNGC 5 cut(s) 172, 360, 462, 504, 507
GsaI CCCAGC 1 cut(s) 51
HaeIII GGCC 2 cut(s) 5, 578
HapII CCGG 2 cut(s) 210, 240
HgaI GACGC 1 cut(s) 620
Hin1II CATG 6 cut(s) 10, 108, 141, 461, 469, 514
HincII GTYRAC 2 cut(s) 196, 205
HindII GTYRAC 2 cut(s) 196, 205
HinfI GANTC 2 cut(s) 101, 560
HpaII CCGG 2 cut(s) 210, 240
Hpy166II GTNNAC 5 cut(s) 196, 205, 272, 449, 559
Hpy188I TCNGA 7 cut(s) 17, 86, 119, 156, 165, 232, 397
Hpy188III TCNNGA 2 cut(s) 57, 440
Hpy8I GTNNAC 5 cut(s) 196, 205, 272, 449, 559
HpyAV CCTTC 6 cut(s) 161, 237, 246, 382, 437, 526
HpyCH4IV ACGT 1 cut(s) 326
HpyCH4V TGCA 3 cut(s) 141, 506, 656
HpyF10VI GCNNNNNNNGC 3 cut(s) 147, 356, 512
HpyF3I CTNAG 1 cut(s) 83
HpySE526I ACGT 1 cut(s) 326
Hsp92II CATG 6 cut(s) 10, 108, 141, 461, 469, 514
KpnI GGTACC 1 cut(s) 316
Kzo9I GATC 4 cut(s) 59, 134, 177, 232
LmnI GCTCC 1 cut(s) 376
LpnPI CCDG 8 cut(s) 61, 107, 137, 194, 223, 253, 480, 639
Lsp1109I GCAGC 4 cut(s) 183, 448, 490, 518
LweI GCATC 1 cut(s) 346
MaeI CTAG 1 cut(s) 57
MaeII ACGT 1 cut(s) 326
MalI GATC 4 cut(s) 61, 136, 179, 234
MboI GATC 4 cut(s) 59, 134, 177, 232
MboII GAAGA 5 cut(s) 215, 313, 377, 428, 608
MfeI CAATTG 1 cut(s) 651
MflI RGATCY 1 cut(s) 177
MhlI GDGCHC 1 cut(s) 381
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 4 cut(s) 52, 285, 479, 651
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 1 cut(s) 554
MnlI CCTC 9 cut(s) 90, 92, 228, 231, 400, 403, 469, 532, 547
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
MseI TTAA 1 cut(s) 89
MslI CAYNNNNRTG 1 cut(s) 470
Msp20I TGGCCA 1 cut(s) 5
MspI CCGG 2 cut(s) 210, 240
MspR9I CCNGG 1 cut(s) 210
MunI CAATTG 1 cut(s) 651
MvnI CGCG 2 cut(s) 416, 614
MwoI GCNNNNNNNGC 3 cut(s) 147, 356, 512
NciI CCSGG 1 cut(s) 210
NcoI CCATGG 1 cut(s) 510
NdeII GATC 4 cut(s) 59, 134, 177, 232
NlaIII CATG 6 cut(s) 10, 108, 141, 461, 469, 514
NlaIV GGNNCC 2 cut(s) 214, 314
NspI RCATGY 1 cut(s) 461
PfeI GAWTC 1 cut(s) 101
PflFI GACNNNGTC 1 cut(s) 563
PkrI GCNGC 5 cut(s) 173, 361, 463, 505, 508
PleI GAGTC 1 cut(s) 554
PpsI GAGTC 1 cut(s) 554
Psp124BI GAGCTC 1 cut(s) 381
PspFI CCCAGC 1 cut(s) 47
PspN4I GGNNCC 2 cut(s) 214, 314
PsrI GAACNNNNNNTAC 2 cut(s) 296, 328
PstI CTGCAG 1 cut(s) 508
PsuI RGATCY 1 cut(s) 177
PsyI GACNNNGTC 1 cut(s) 563
RsaI GTAC 3 cut(s) 273, 314, 619
RsaNI GTAC 3 cut(s) 272, 313, 618
RseI CAYNNNNRTG 1 cut(s) 470
SacI GAGCTC 1 cut(s) 381
SaqAI TTAA 1 cut(s) 89
SatI GCNGC 5 cut(s) 172, 360, 462, 504, 507
Sau3AI GATC 4 cut(s) 59, 134, 177, 232
SchI GAGTC 1 cut(s) 554
ScrFI CCNGG 1 cut(s) 210
SduI GDGCHC 1 cut(s) 381
SfaNI GCATC 1 cut(s) 346
SfcI CTRYAG 1 cut(s) 504
SmiMI CAYNNNNRTG 1 cut(s) 470
Sse9I AATT 4 cut(s) 52, 285, 479, 651
SsiI CCGC 4 cut(s) 360, 374, 416, 515
SspMI CTAG 1 cut(s) 57
SstI GAGCTC 1 cut(s) 381
StyD4I CCNGG 1 cut(s) 208
StyI CCWWGG 1 cut(s) 510
TaiI ACGT 1 cut(s) 329
TaqI TCGA 1 cut(s) 454
TaqII GACCGA 1 cut(s) 351
TasI AATT 4 cut(s) 52, 285, 479, 651
TatI WGTACW 1 cut(s) 271
TauI GCSGC 1 cut(s) 362
TfiI GAWTC 1 cut(s) 101
Tru1I TTAA 1 cut(s) 89
Tru9I TTAA 1 cut(s) 89
TseI GCWGC 4 cut(s) 171, 461, 503, 506
TspDTI ATGAA 2 cut(s) 62, 93
TspGWI ACGGA 1 cut(s) 553
Tth111I GACNNNGTC 1 cut(s) 563
XbaI TCTAGA 1 cut(s) 56
XceI RCATGY 1 cut(s) 461
XmiI GTMKAC 1 cut(s) 558
XspI CTAG 1 cut(s) 57
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.