Rmu_co8313633.1_g000001

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8313633.1
OG0005641
Physical Location & Seq
Reverse (-)
1 .. 439
439 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8313633.1_g000001.1.cds

Sequence Viewer

Length: 311 bp
atggccatgtccatcagaacaatcacaacaacaacagctcttactcccagcaattctagatcatcacaacttcatcaccacctcagattaaaccagagcgattcatgtcgttttctcggaaaccggagcttgccatcgtgctatacgagccttcagagagttcagattggcagcaagatcctgctaatggtggtcaacagcgttgaccccggcacccctcctcttccttctgaaccttccggtggttcttggaaaatgtggcttttaggtgtacttttctcagtaattattcccttaacgaagaacaaatg
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

103

Amino Acids

11.31

Weight (kDa)

10.53

Isoelectric Point (pI)

67.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 212
AclWI GGATC 1 cut(s) 172
AcoI YGGCCR 1 cut(s) 3
AcuI CTGAAG 1 cut(s) 137
AfaI GTAC 1 cut(s) 273
AfiI CCNNNNNNNGG 2 cut(s) 187, 242
AluBI AGCT 2 cut(s) 38, 129
AluI AGCT 2 cut(s) 38, 129
AlwI GGATC 1 cut(s) 172
AoxI GGCC 1 cut(s) 3
ApeKI GCWGC 1 cut(s) 171
AsuC2I CCSGG 1 cut(s) 210
AsuHPI GGTGA 1 cut(s) 68
BalI TGGCCA 1 cut(s) 5
BanI GGYRCC 1 cut(s) 212
BbvI GCAGC 1 cut(s) 183
BccI CCATC 2 cut(s) 20, 142
BcnI CCSGG 1 cut(s) 210
BfaI CTAG 1 cut(s) 57
BisI GCNGC 1 cut(s) 172
BlsI GCNGC 1 cut(s) 173
Bme1390I CCNGG 1 cut(s) 210
BmiI GGNNCC 1 cut(s) 214
BmrFI CCNGG 1 cut(s) 210
BpuMI CCSGG 1 cut(s) 210
BsaJI CCNNGG 1 cut(s) 208
BsaWI WCCGGW 2 cut(s) 123, 239
Bsc4I CCNNNNNNNGG 2 cut(s) 187, 242
BseDI CCNNGG 1 cut(s) 208
BseLI CCNNNNNNNGG 2 cut(s) 187, 242
BseMII CTCAG 2 cut(s) 97, 294
BseRI GAGGAG 1 cut(s) 210
BseXI GCAGC 1 cut(s) 183
BseYI CCCAGC 1 cut(s) 47
BshFI GGCC 1 cut(s) 5
BshNI GGYRCC 1 cut(s) 212
BsiSI CCGG 3 cut(s) 124, 210, 240
BslI CCNNNNNNNGG 2 cut(s) 187, 242
BsnI GGCC 1 cut(s) 5
Bsp143I GATC 2 cut(s) 59, 177
BspANI GGCC 1 cut(s) 5
BspCNI CTCAG 2 cut(s) 96, 293
BspLI GGNNCC 1 cut(s) 214
BspPI GGATC 1 cut(s) 172
BspT107I GGYRCC 1 cut(s) 212
BssECI CCNNGG 1 cut(s) 208
BssMI GATC 2 cut(s) 59, 177
Bst6I CTCTTC 1 cut(s) 228
BstC8I GCNNGC 1 cut(s) 131
BstDEI CTNAG 2 cut(s) 83, 280
BstKTI GATC 2 cut(s) 62, 180
BstMBI GATC 2 cut(s) 59, 177
BstMWI GCNNNNNNNGC 1 cut(s) 147
BstSCI CCNGG 1 cut(s) 208
BstV1I GCAGC 1 cut(s) 183
BstX2I RGATCY 1 cut(s) 177
BstYI RGATCY 1 cut(s) 177
BsuRI GGCC 1 cut(s) 5
Cac8I GCNNGC 1 cut(s) 131
Csp6I GTAC 1 cut(s) 272
CviAII CATG 2 cut(s) 7, 105
CviJI RGCY 5 cut(s) 5, 38, 129, 150, 262
CviKI_1 RGCY 5 cut(s) 5, 38, 129, 150, 262
CviQI GTAC 1 cut(s) 272
DdeI CTNAG 2 cut(s) 83, 280
DpnI GATC 2 cut(s) 61, 179
DpnII GATC 2 cut(s) 59, 177
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 1 cut(s) 228
EarI CTCTTC 1 cut(s) 228
Eco57I CTGAAG 1 cut(s) 137
FaeI CATG 2 cut(s) 10, 108
FaiI YATR 3 cut(s) 8, 106, 144
FatI CATG 2 cut(s) 6, 104
Fnu4HI GCNGC 1 cut(s) 172
Fsp4HI GCNGC 1 cut(s) 172
FspBI CTAG 1 cut(s) 57
GluI GCNGC 1 cut(s) 172
GsaI CCCAGC 1 cut(s) 51
HaeIII GGCC 1 cut(s) 5
HapII CCGG 3 cut(s) 124, 210, 240
Hin1II CATG 2 cut(s) 10, 108
HincII GTYRAC 2 cut(s) 196, 205
HindII GTYRAC 2 cut(s) 196, 205
HinfI GANTC 1 cut(s) 101
HpaII CCGG 3 cut(s) 124, 210, 240
HphI GGTGA 1 cut(s) 68
Hpy166II GTNNAC 3 cut(s) 196, 205, 272
Hpy188I TCNGA 6 cut(s) 17, 86, 119, 156, 165, 232
Hpy188III TCNNGA 1 cut(s) 57
Hpy8I GTNNAC 3 cut(s) 196, 205, 272
HpyAV CCTTC 3 cut(s) 161, 237, 246
HpyF10VI GCNNNNNNNGC 1 cut(s) 147
HpyF3I CTNAG 2 cut(s) 83, 280
Hsp92II CATG 2 cut(s) 10, 108
Kzo9I GATC 2 cut(s) 59, 177
LmnI GCTCC 1 cut(s) 126
LpnPI CCDG 6 cut(s) 61, 107, 137, 194, 223, 253
Lsp1109I GCAGC 1 cut(s) 183
MaeI CTAG 1 cut(s) 57
MalI GATC 2 cut(s) 61, 179
MboI GATC 2 cut(s) 59, 177
MboII GAAGA 1 cut(s) 215
MflI RGATCY 1 cut(s) 177
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 2 cut(s) 52, 285
MluNI TGGCCA 1 cut(s) 5
MnlI CCTC 3 cut(s) 92, 228, 231
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
MseI TTAA 2 cut(s) 89, 296
Msp20I TGGCCA 1 cut(s) 5
MspI CCGG 3 cut(s) 124, 210, 240
MspR9I CCNGG 1 cut(s) 210
MwoI GCNNNNNNNGC 1 cut(s) 147
NciI CCSGG 1 cut(s) 210
NdeII GATC 2 cut(s) 59, 177
NlaIII CATG 2 cut(s) 10, 108
NlaIV GGNNCC 1 cut(s) 214
PcsI WCGNNNNNNNCGW 1 cut(s) 143
PfeI GAWTC 1 cut(s) 101
PkrI GCNGC 1 cut(s) 173
PspFI CCCAGC 1 cut(s) 47
PspN4I GGNNCC 1 cut(s) 214
PsuI RGATCY 1 cut(s) 177
RsaI GTAC 1 cut(s) 273
RsaNI GTAC 1 cut(s) 272
SaqAI TTAA 2 cut(s) 89, 296
SatI GCNGC 1 cut(s) 172
Sau3AI GATC 2 cut(s) 59, 177
ScrFI CCNGG 1 cut(s) 210
SetI ASST 5 cut(s) 40, 84, 131, 238, 271
Sse9I AATT 2 cut(s) 52, 285
SspMI CTAG 1 cut(s) 57
StyD4I CCNGG 1 cut(s) 208
TasI AATT 2 cut(s) 52, 285
TatI WGTACW 1 cut(s) 271
TfiI GAWTC 1 cut(s) 101
Tru1I TTAA 2 cut(s) 89, 296
Tru9I TTAA 2 cut(s) 89, 296
TseI GCWGC 1 cut(s) 171
TspDTI ATGAA 2 cut(s) 62, 93
XbaI TCTAGA 1 cut(s) 56
XspI CTAG 1 cut(s) 57
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.