Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0005641

Physical Location & Seq

Genomic Coordinates Reverse (-)

6336649 .. 6338430

Gene Structure 1782 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00223250.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 672 bp

ATGGCCATGTCCATCAGAACAATCACAACAACAACAGCTCTTACTTTCAGCAATTCTAGATCATCACAACTTCATCACCACCACAGATTAAACCAGAGAGATTCATGTCGTTTTCTCGGAAACCGGAGCTTGCCATCCTGCAATACGAGCCTTCAGAGAGTTCAGATTGGCAGCAAGATCCTGCTAATGGTGGTCAACAGCGTTGACCCCGGCACCCCTCCTCTTCCTTCTGAACCTTCCGGTGGTTCTTGGAAAATGTGGCTTTTAGGTGTACTTTTCTCAGTAATTATTCCCTTAACGAAGAACAAATGGTACCCATTACTCAAGTTGAAAGACCGAGTGGAGACGGTGACGGATGCCGCAGAAGAAATGGCGGAGCTCGTGGAAAAGGTGTCTGAGGAAGTAGAGGAGGTTGCGGACGATATCGGCAACCATCTTCCCGAAGGTAAACTTCGACACGCTGCCATGCGTGTGGAGGAATTAGCTGACAAAACAGGCAAGGCTGCGGCCATGGCGGATGATATTATTGAGAAGAAATTGCAGGTTGAGGAAGTGGAGAAAGAGGTAGACTCCATCACTGACAAGGCCAACGAGAAAAAGAAAGAAGACAAAATCAAAGAAGCGAGTACCAAGCAAGATAATAGTATTAAAAATGAGACAGATGCAAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

223

Amino Acids

24.87

Weight (kDa)

5.76

Isoelectric Point (pI)

44.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005641)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g36280
malus_domestica	MD08G1189800.v1.1 MD15G1377600.v1.1
prunus_persica	Prupe.1G524300_v2.0.a1 Prupe.1G524300_v2.0.a1
pyrus_communis	pycom08g16300 pycom08g16330 pycom15g33830
rosa_chinensis	RchiOBHm_Chr7g0238181 RchiOBHm_Chr7g0238201
rosa_laevigata	RLG00000000931 RLG00000000933
rosa_multiflora	Rmu_co8313633.1_g000001 Rmu_sc0001371.1_g000005 Rmu_sc0005102.1_g000017 Rmu_sc0005102.1_g000024
rosa_roxburghii	Rroxscaffold_3G00223250 Rroxscaffold_3G00223280
rosa_rugosa	Rorug07G0310800.1 Rorug07G0310900 Rorug07G0311000
rosa_samantha	Rh7AG466800 Rh7BG437200 Rh7CG484300 Rh7CG484500 Rh7DG452900
rosa_wichuraiana	Rw7G038630 Rw7G038640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	532
Acc65I	GGTACC	1 cut(s)	312
AccB1I	GGYRCC	2 cut(s)	212, 312
AccI	GTMKAC	1 cut(s)	567
AciI	CCGC	5 cut(s)	360, 374, 416, 506, 515
AclWI	GGATC	1 cut(s)	172
AcoI	YGGCCR	2 cut(s)	3, 507
AcuI	CTGAAG	1 cut(s)	137
AfaI	GTAC	3 cut(s)	273, 314, 628
AfiI	CCNNNNNNNGG	2 cut(s)	187, 242
AgsI	TTSAA	1 cut(s)	331
AluBI	AGCT	4 cut(s)	38, 129, 379, 485
AluI	AGCT	4 cut(s)	38, 129, 379, 485
Alw21I	GWGCWC	1 cut(s)	381
Alw26I	GTCTC	2 cut(s)	338, 650
AlwI	GGATC	1 cut(s)	172
AoxI	GGCC	3 cut(s)	3, 507, 585
ApeKI	GCWGC	3 cut(s)	171, 461, 503
Asp718I	GGTACC	1 cut(s)	312
AsuC2I	CCSGG	1 cut(s)	210
AsuHPI	GGTGA	2 cut(s)	68, 361
BalI	TGGCCA	1 cut(s)	5
BanI	GGYRCC	2 cut(s)	212, 312
BanII	GRGCYC	1 cut(s)	381
BauI	CACGAG	1 cut(s)	380
BbsI	GAAGAC	1 cut(s)	612
Bbv12I	GWGCWC	1 cut(s)	381
BbvI	GCAGC	3 cut(s)	183, 448, 490
BccI	CCATC	4 cut(s)	20, 142, 441, 581
BcnI	CCSGG	1 cut(s)	210
BcoDI	GTCTC	2 cut(s)	338, 650
BfaI	CTAG	1 cut(s)	57
BfuAI	ACCTGC	1 cut(s)	532
BisI	GCNGC	5 cut(s)	172, 360, 462, 504, 507
BlsI	GCNGC	5 cut(s)	173, 361, 463, 505, 508
Bme1390I	CCNGG	1 cut(s)	210
BmiI	GGNNCC	2 cut(s)	214, 314
BmrFI	CCNGG	1 cut(s)	210
BmsI	GCATC	2 cut(s)	346, 652
BpiI	GAAGAC	1 cut(s)	612
BplI	GAGNNNNNCTC	2 cut(s)	554, 586
BpuEI	CTTGAG	1 cut(s)	308
BpuMI	CCSGG	1 cut(s)	210
BsaJI	CCNNGG	2 cut(s)	208, 510
BsaWI	WCCGGW	2 cut(s)	123, 239
Bsc4I	CCNNNNNNNGG	2 cut(s)	187, 242
BseDI	CCNNGG	2 cut(s)	208, 510
BseGI	GGATG	3 cut(s)	134, 361, 523
BseLI	CCNNNNNNNGG	2 cut(s)	187, 242
BseMII	CTCAG	2 cut(s)	294, 387
BseRI	GAGGAG	2 cut(s)	210, 422
BseXI	GCAGC	3 cut(s)	183, 448, 490
BshFI	GGCC	3 cut(s)	5, 509, 587
BshNI	GGYRCC	2 cut(s)	212, 312
BsiHKAI	GWGCWC	1 cut(s)	381
BsiSI	CCGG	3 cut(s)	124, 210, 240
BslI	CCNNNNNNNGG	2 cut(s)	187, 242
BsmAI	GTCTC	2 cut(s)	338, 650
BsmBI	CGTCTC	1 cut(s)	338
BsnI	GGCC	3 cut(s)	5, 509, 587
Bsp1286I	GDGCHC	1 cut(s)	381
Bsp143I	GATC	2 cut(s)	59, 177
Bsp19I	CCATGG	1 cut(s)	510
BspACI	CCGC	5 cut(s)	360, 374, 416, 506, 515
BspANI	GGCC	3 cut(s)	5, 509, 587
BspCNI	CTCAG	2 cut(s)	293, 388
BspLI	GGNNCC	2 cut(s)	214, 314
BspMI	ACCTGC	1 cut(s)	532
BspPI	GGATC	1 cut(s)	172
BspT107I	GGYRCC	2 cut(s)	212, 312
BssECI	CCNNGG	2 cut(s)	208, 510
BssMI	GATC	2 cut(s)	59, 177
BssSI	CACGAG	1 cut(s)	380
BssT1I	CCWWGG	1 cut(s)	510
Bst2BI	CACGAG	1 cut(s)	380
Bst4CI	ACNGT	1 cut(s)	349
Bst6I	CTCTTC	1 cut(s)	228
BstC8I	GCNNGC	1 cut(s)	131
BstDEI	CTNAG	2 cut(s)	280, 396
BstDSI	CCRYGG	1 cut(s)	510
BstF5I	GGATG	3 cut(s)	134, 361, 523
BstKTI	GATC	2 cut(s)	62, 180
BstMAI	GTCTC	2 cut(s)	338, 650
BstMBI	GATC	2 cut(s)	59, 177
BstMWI	GCNNNNNNNGC	2 cut(s)	147, 512
BstSCI	CCNGG	1 cut(s)	208
BstV1I	GCAGC	3 cut(s)	183, 448, 490
BstV2I	GAAGAC	1 cut(s)	612
BstX2I	RGATCY	1 cut(s)	177
BstXI	CCANNNNNNTGG	1 cut(s)	472
BstYI	RGATCY	1 cut(s)	177
BsuRI	GGCC	3 cut(s)	5, 509, 587
BtgI	CCRYGG	1 cut(s)	510
BtsCI	GGATG	3 cut(s)	134, 361, 523
BtsIMutI	CAGTG	1 cut(s)	576
BveI	ACCTGC	1 cut(s)	532
Cac8I	GCNNGC	1 cut(s)	131
Csp6I	GTAC	3 cut(s)	272, 313, 627
CviAII	CATG	4 cut(s)	7, 105, 466, 511
CviQI	GTAC	3 cut(s)	272, 313, 627
DdeI	CTNAG	2 cut(s)	280, 396
DpnI	GATC	2 cut(s)	61, 179
DpnII	GATC	2 cut(s)	59, 177
EaeI	YGGCCR	2 cut(s)	3, 507
Eam1104I	CTCTTC	1 cut(s)	228
EarI	CTCTTC	1 cut(s)	228
EciI	GGCGGA	2 cut(s)	389, 530
Ecl136II	GAGCTC	1 cut(s)	379
Eco130I	CCWWGG	1 cut(s)	510
Eco24I	GRGCYC	1 cut(s)	381
Eco32I	GATATC	1 cut(s)	424
Eco53kI	GAGCTC	1 cut(s)	379
Eco57I	CTGAAG	1 cut(s)	137
EcoICRI	GAGCTC	1 cut(s)	379
EcoRV	GATATC	1 cut(s)	424
EcoT14I	CCWWGG	1 cut(s)	510
EcoT38I	GRGCYC	1 cut(s)	381
ErhI	CCWWGG	1 cut(s)	510
Esp3I	CGTCTC	1 cut(s)	338
FaeI	CATG	4 cut(s)	10, 108, 469, 514
FaiI	YATR	4 cut(s)	8, 106, 467, 512
FalI	AAGNNNNNCTT	2 cut(s)	435, 467
FatI	CATG	4 cut(s)	6, 104, 465, 510
FblI	GTMKAC	1 cut(s)	567
Fnu4HI	GCNGC	5 cut(s)	172, 360, 462, 504, 507
FokI	GGATG	3 cut(s)	121, 368, 530
FriOI	GRGCYC	1 cut(s)	381
Fsp4HI	GCNGC	5 cut(s)	172, 360, 462, 504, 507
FspBI	CTAG	1 cut(s)	57
GluI	GCNGC	5 cut(s)	172, 360, 462, 504, 507
HaeIII	GGCC	3 cut(s)	5, 509, 587
HapII	CCGG	3 cut(s)	124, 210, 240
Hin1II	CATG	4 cut(s)	10, 108, 469, 514
HincII	GTYRAC	2 cut(s)	196, 205
HindII	GTYRAC	2 cut(s)	196, 205
HinfI	GANTC	2 cut(s)	101, 569
HpaII	CCGG	3 cut(s)	124, 210, 240
HphI	GGTGA	2 cut(s)	68, 361
Hpy166II	GTNNAC	5 cut(s)	196, 205, 272, 449, 568
Hpy188I	TCNGA	6 cut(s)	17, 119, 156, 165, 232, 397
Hpy188III	TCNNGA	2 cut(s)	57, 440
Hpy8I	GTNNAC	5 cut(s)	196, 205, 272, 449, 568
HpyAV	CCTTC	4 cut(s)	161, 237, 246, 437
HpyCH4III	ACNGT	1 cut(s)	349
HpyCH4V	TGCA	3 cut(s)	141, 541, 665
HpyF10VI	GCNNNNNNNGC	2 cut(s)	147, 512
HpyF3I	CTNAG	2 cut(s)	280, 396
Hsp92II	CATG	4 cut(s)	10, 108, 469, 514
KpnI	GGTACC	1 cut(s)	316
Kzo9I	GATC	2 cut(s)	59, 177
LmnI	GCTCC	2 cut(s)	126, 376
LpnPI	CCDG	8 cut(s)	107, 137, 151, 194, 223, 253, 480, 527
Lsp1109I	GCAGC	3 cut(s)	183, 448, 490
LweI	GCATC	2 cut(s)	346, 652
MaeI	CTAG	1 cut(s)	57
MaeIII	GTNAC	1 cut(s)	349
MalI	GATC	2 cut(s)	61, 179
MboI	GATC	2 cut(s)	59, 177
MboII	GAAGA	6 cut(s)	215, 313, 377, 428, 544, 617
MflI	RGATCY	1 cut(s)	177
MhlI	GDGCHC	1 cut(s)	381
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	4 cut(s)	52, 285, 479, 536
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	1 cut(s)	563
MnlI	CCTC	8 cut(s)	228, 231, 391, 400, 403, 469, 541, 556
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	3 cut(s)	89, 296, 648
MslI	CAYNNNNRTG	1 cut(s)	470
Msp20I	TGGCCA	1 cut(s)	5
MspI	CCGG	3 cut(s)	124, 210, 240
MspR9I	CCNGG	1 cut(s)	210
MwoI	GCNNNNNNNGC	2 cut(s)	147, 512
NciI	CCSGG	1 cut(s)	210
NcoI	CCATGG	1 cut(s)	510
NdeII	GATC	2 cut(s)	59, 177
NlaIII	CATG	4 cut(s)	10, 108, 469, 514
NlaIV	GGNNCC	2 cut(s)	214, 314
NmuCI	GTSAC	1 cut(s)	349
PfeI	GAWTC	1 cut(s)	101
PkrI	GCNGC	5 cut(s)	173, 361, 463, 505, 508
PleI	GAGTC	1 cut(s)	563
PpsI	GAGTC	1 cut(s)	563
Psp124BI	GAGCTC	1 cut(s)	381
PspN4I	GGNNCC	2 cut(s)	214, 314
PsrI	GAACNNNNNNTAC	2 cut(s)	296, 328
PsuI	RGATCY	1 cut(s)	177
RsaI	GTAC	3 cut(s)	273, 314, 628
RsaNI	GTAC	3 cut(s)	272, 313, 627
RseI	CAYNNNNRTG	1 cut(s)	470
SacI	GAGCTC	1 cut(s)	381
SaqAI	TTAA	3 cut(s)	89, 296, 648
SatI	GCNGC	5 cut(s)	172, 360, 462, 504, 507
Sau3AI	GATC	2 cut(s)	59, 177
SchI	GAGTC	1 cut(s)	563
ScrFI	CCNGG	1 cut(s)	210
SduI	GDGCHC	1 cut(s)	381
SfaNI	GCATC	2 cut(s)	346, 652
SmiMI	CAYNNNNRTG	1 cut(s)	470
SmlI	CTYRAG	1 cut(s)	323
SmoI	CTYRAG	1 cut(s)	323
Sse9I	AATT	4 cut(s)	52, 285, 479, 536
SsiI	CCGC	5 cut(s)	360, 374, 416, 506, 515
SspMI	CTAG	1 cut(s)	57
SstI	GAGCTC	1 cut(s)	381
StyD4I	CCNGG	1 cut(s)	208
StyI	CCWWGG	1 cut(s)	510
TaaI	ACNGT	1 cut(s)	349
TaqI	TCGA	1 cut(s)	454
TaqII	GACCGA	1 cut(s)	351
TasI	AATT	4 cut(s)	52, 285, 479, 536
TatI	WGTACW	1 cut(s)	271
TauI	GCSGC	2 cut(s)	362, 509
TfiI	GAWTC	1 cut(s)	101
Tru1I	TTAA	3 cut(s)	89, 296, 648
Tru9I	TTAA	3 cut(s)	89, 296, 648
TscAI	CASTG	1 cut(s)	583
TseFI	GTSAC	1 cut(s)	349
TseI	GCWGC	3 cut(s)	171, 461, 503
Tsp45I	GTSAC	1 cut(s)	349
TspDTI	ATGAA	2 cut(s)	62, 93
TspGWI	ACGGA	1 cut(s)	368
TspRI	CASTG	1 cut(s)	583
XbaI	TCTAGA	1 cut(s)	56
XmiI	GTMKAC	1 cut(s)	567
XspI	CTAG	1 cut(s)	57

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.