Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0005641

Physical Location & Seq

Genomic Coordinates Reverse (-)

46236458 .. 46239807

Gene Structure 3350 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1377600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 702 bp

ATGGCCATGTCGATCGGATGCTCAATAAGTTCTCCTTGCAGTTCTAGACGTTTGCAGGCTTCAGTTTTTAGACCTAGTTGTCTGAGTACTAATCACGGGGACAGATGTCGGTATCTCGGAAATCGGAACTTCTTGCAGACCCTCGTGAAGATCCAAAATGGTAGCCAGAAAAAGATGGACGTGGTTGTCAATGGTGTGGAACCAGGAGCTCCTCTTCCTTCTGGTCCTTCCGGTAATAATTGGAAACTATGGCTTGTGGGGATGCTTTTCTCAGTAGTTATACCCTTTTGGAAAAACAAATGGTGGCCATTGCTAAAATTCAAAGAGACATTTTCAACGGCGCTGGATACAGTGGAAGATGTGGCAGAAATGGTAGAGAAGGTGGCCGGGGAAGTGGAGAAGGTGGCCGATGACATTGCCGATCATCTTCCAGAAGGAAAACTTCAAAGGGCAGCAAGGATTGTTGAGAGTGTGGCAAGAGAAGCAGCCAAGGATGCTGCGCTAGCAGATGATCTCATTGAGCAGGTTGAGGGTGTCGAAAAGGAAGTGGACTCTGTCATTGAGCAAGCCAATCAGAAAATCAAAGAAGAAGATGATACAGAAAATCAGGCAGCAAAAATCAAAGACGCGACGGAGATTAAAGCTAAGATAGCAGAGATCAAAGAAGTGAATGCTGTTAAAAACGAGACAATAAAAAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

234

Amino Acids

25.7

Weight (kDa)

5.32

Isoelectric Point (pI)

36.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005641)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g36280
malus_domestica	MD08G1189800.v1.1 MD15G1377600.v1.1
prunus_persica	Prupe.1G524300_v2.0.a1 Prupe.1G524300_v2.0.a1
pyrus_communis	pycom08g16300 pycom08g16330 pycom15g33830
rosa_chinensis	RchiOBHm_Chr7g0238181 RchiOBHm_Chr7g0238201
rosa_laevigata	RLG00000000931 RLG00000000933
rosa_multiflora	Rmu_co8313633.1_g000001 Rmu_sc0001371.1_g000005 Rmu_sc0005102.1_g000017 Rmu_sc0005102.1_g000024
rosa_roxburghii	Rroxscaffold_3G00223250 Rroxscaffold_3G00223280
rosa_rugosa	Rorug07G0310800.1 Rorug07G0310900 Rorug07G0311000
rosa_samantha	Rh7AG466800 Rh7BG437200 Rh7CG484300 Rh7CG484500 Rh7DG452900
rosa_wichuraiana	Rw7G038630 Rw7G038640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	78, 185
Acc36I	ACCTGC	1 cut(s)	514
AccII	CGCG	1 cut(s)	629
AclWI	GGATC	1 cut(s)	145
AcoI	YGGCCR	4 cut(s)	3, 305, 384, 405
AcsI	RAATTY	1 cut(s)	317
AcuI	CTGAAG	1 cut(s)	45
AfaI	GTAC	1 cut(s)	88
AgsI	TTSAA	3 cut(s)	322, 336, 446
AjiI	CACGTC	1 cut(s)	181
AjnI	CCWGG	1 cut(s)	202
AluBI	AGCT	3 cut(s)	209, 644, 699
AluI	AGCT	3 cut(s)	209, 644, 699
Alw21I	GWGCWC	1 cut(s)	211
Alw26I	GTCTC	2 cut(s)	320, 680
AlwI	GGATC	1 cut(s)	145
AoxI	GGCC	4 cut(s)	3, 305, 384, 405
ApeKI	GCWGC	4 cut(s)	452, 485, 497, 611
ApoI	RAATTY	1 cut(s)	317
AspLEI	GCGC	2 cut(s)	343, 502
AspS9I	GGNCC	1 cut(s)	224
AsuC2I	CCSGG	1 cut(s)	388
AsuNHI	GCTAGC	1 cut(s)	502
AvaII	GGWCC	1 cut(s)	224
BalI	TGGCCA	2 cut(s)	5, 307
BanII	GRGCYC	1 cut(s)	211
BauI	CACGAG	1 cut(s)	143
Bbv12I	GWGCWC	1 cut(s)	211
BbvI	GCAGC	4 cut(s)	464, 484, 497, 623
BccI	CCATC	1 cut(s)	169
BceAI	ACGGC	1 cut(s)	354
BcgI	CGANNNNNNTGC	2 cut(s)	398, 432
BciT130I	CCWGG	1 cut(s)	204
BciVI	GTATCC	1 cut(s)	340
BcnI	CCSGG	1 cut(s)	388
BcoDI	GTCTC	2 cut(s)	320, 680
BfaI	CTAG	3 cut(s)	45, 75, 503
BfoI	RGCGCY	1 cut(s)	344
BfuAI	ACCTGC	1 cut(s)	514
BfuI	GTATCC	1 cut(s)	340
BisI	GCNGC	4 cut(s)	453, 486, 498, 612
BlsI	GCNGC	4 cut(s)	454, 487, 499, 613
BmcAI	AGTACT	1 cut(s)	88
Bme1390I	CCNGG	2 cut(s)	204, 388
Bme18I	GGWCC	1 cut(s)	224
BmgBI	CACGTC	1 cut(s)	181
BmgT120I	GGNCC	1 cut(s)	224
BmiI	GGNNCC	1 cut(s)	201
BmrFI	CCNGG	2 cut(s)	204, 388
BmsI	GCATC	3 cut(s)	8, 252, 484
BmtI	GCTAGC	1 cut(s)	506
BoxI	GACNNNNGTC	1 cut(s)	105
BpuMI	CCSGG	1 cut(s)	388
BsaJI	CCNNGG	2 cut(s)	387, 489
BsaWI	WCCGGW	1 cut(s)	230
Bse3DI	GCAATG	2 cut(s)	308, 414
BseBI	CCWGG	1 cut(s)	204
BseDI	CCNNGG	2 cut(s)	387, 489
BseGI	GGATG	3 cut(s)	23, 267, 499
BseMI	GCAATG	2 cut(s)	308, 414
BseMII	CTCAG	2 cut(s)	74, 285
BseRI	GAGGAG	1 cut(s)	201
BseXI	GCAGC	4 cut(s)	464, 484, 497, 623
Bsh1236I	CGCG	1 cut(s)	629
Bsh1285I	CGRYCG	1 cut(s)	15
BshFI	GGCC	4 cut(s)	5, 307, 386, 407
BsiEI	CGRYCG	1 cut(s)	15
BsiHKAI	GWGCWC	1 cut(s)	211
BsiSI	CCGG	2 cut(s)	231, 387
BslFI	GGGAC	1 cut(s)	113
BsmAI	GTCTC	2 cut(s)	320, 680
BsmFI	GGGAC	1 cut(s)	113
BsmI	GAATGC	1 cut(s)	676
BsnI	GGCC	4 cut(s)	5, 307, 386, 407
Bsp1286I	GDGCHC	1 cut(s)	211
Bsp143I	GATC	5 cut(s)	12, 150, 421, 511, 657
BspANI	GGCC	4 cut(s)	5, 307, 386, 407
BspCNI	CTCAG	2 cut(s)	75, 284
BspFNI	CGCG	1 cut(s)	629
BspLI	GGNNCC	1 cut(s)	201
BspMI	ACCTGC	1 cut(s)	514
BspOI	GCTAGC	1 cut(s)	506
BspPI	GGATC	1 cut(s)	145
BsrDI	GCAATG	2 cut(s)	308, 414
BssECI	CCNNGG	2 cut(s)	387, 489
BssMI	GATC	5 cut(s)	12, 150, 421, 511, 657
BssSI	CACGAG	1 cut(s)	143
BssT1I	CCWWGG	1 cut(s)	489
Bst2BI	CACGAG	1 cut(s)	143
Bst2UI	CCWGG	1 cut(s)	204
Bst4CI	ACNGT	1 cut(s)	352
Bst6I	CTCTTC	1 cut(s)	219
BstC8I	GCNNGC	3 cut(s)	57, 504, 567
BstDEI	CTNAG	3 cut(s)	83, 271, 645
BstF5I	GGATG	3 cut(s)	23, 267, 499
BstFNI	CGCG	1 cut(s)	629
BstH2I	RGCGCY	1 cut(s)	344
BstHHI	GCGC	2 cut(s)	343, 502
BstKTI	GATC	5 cut(s)	15, 153, 424, 514, 660
BstMAI	GTCTC	2 cut(s)	320, 680
BstMBI	GATC	5 cut(s)	12, 150, 421, 511, 657
BstMCI	CGRYCG	1 cut(s)	15
BstMWI	GCNNNNNNNGC	4 cut(s)	482, 494, 503, 650
BstNI	CCWGG	1 cut(s)	204
BstPAI	GACNNNNGTC	1 cut(s)	105
BstSCI	CCNGG	2 cut(s)	202, 386
BstUI	CGCG	1 cut(s)	629
BstV1I	GCAGC	4 cut(s)	464, 484, 497, 623
BstX2I	RGATCY	1 cut(s)	150
BstYI	RGATCY	1 cut(s)	150
BsuI	GTATCC	1 cut(s)	340
BsuRI	GGCC	4 cut(s)	5, 307, 386, 407
BtrI	CACGTC	1 cut(s)	181
BtsCI	GGATG	3 cut(s)	23, 267, 499
BtsIMutI	CAGTG	1 cut(s)	357
BveI	ACCTGC	1 cut(s)	514
Cac8I	GCNNGC	3 cut(s)	57, 504, 567
CfoI	GCGC	2 cut(s)	343, 502
Cfr13I	GGNCC	1 cut(s)	224
CseI	GACGC	1 cut(s)	635
Csp6I	GTAC	1 cut(s)	87
CviAII	CATG	1 cut(s)	7
CviQI	GTAC	1 cut(s)	87
DdeI	CTNAG	3 cut(s)	83, 271, 645
DpnI	GATC	5 cut(s)	14, 152, 423, 513, 659
DpnII	GATC	5 cut(s)	12, 150, 421, 511, 657
DrdI	GACNNNNNNGTC	2 cut(s)	78, 185
DseDI	GACNNNNNNGTC	2 cut(s)	78, 185
EaeI	YGGCCR	4 cut(s)	3, 305, 384, 405
Eam1104I	CTCTTC	1 cut(s)	219
EarI	CTCTTC	1 cut(s)	219
Ecl136II	GAGCTC	1 cut(s)	209
Eco130I	CCWWGG	1 cut(s)	489
Eco24I	GRGCYC	1 cut(s)	211
Eco47I	GGWCC	1 cut(s)	224
Eco53kI	GAGCTC	1 cut(s)	209
Eco57I	CTGAAG	1 cut(s)	45
EcoICRI	GAGCTC	1 cut(s)	209
EcoRII	CCWGG	1 cut(s)	202
EcoT14I	CCWWGG	1 cut(s)	489
EcoT38I	GRGCYC	1 cut(s)	211
ErhI	CCWWGG	1 cut(s)	489
FaeI	CATG	1 cut(s)	10
FaiI	YATR	3 cut(s)	8, 250, 281
FalI	AAGNNNNNCTT	4 cut(s)	19, 51, 426, 458
FaqI	GGGAC	1 cut(s)	113
FatI	CATG	1 cut(s)	6
Fnu4HI	GCNGC	4 cut(s)	453, 486, 498, 612
FokI	GGATG	3 cut(s)	30, 274, 506
FriOI	GRGCYC	1 cut(s)	211
Fsp4HI	GCNGC	4 cut(s)	453, 486, 498, 612
FspBI	CTAG	3 cut(s)	45, 75, 503
GlaI	GCGC	2 cut(s)	342, 501
GluI	GCNGC	4 cut(s)	453, 486, 498, 612
HaeII	RGCGCY	1 cut(s)	344
HaeIII	GGCC	4 cut(s)	5, 307, 386, 407
HapII	CCGG	2 cut(s)	231, 387
HgaI	GACGC	1 cut(s)	635
HhaI	GCGC	2 cut(s)	343, 502
Hin1II	CATG	1 cut(s)	10
Hin6I	GCGC	2 cut(s)	341, 500
HinP1I	GCGC	2 cut(s)	341, 500
HinfI	GANTC	1 cut(s)	551
HpaII	CCGG	2 cut(s)	231, 387
Hpy166II	GTNNAC	1 cut(s)	550
Hpy188I	TCNGA	5 cut(s)	17, 84, 119, 126, 576
Hpy188III	TCNNGA	3 cut(s)	45, 145, 431
Hpy8I	GTNNAC	1 cut(s)	550
Hpy99I	CGWCG	1 cut(s)	634
HpyAV	CCTTC	5 cut(s)	228, 237, 373, 394, 428
HpyCH4III	ACNGT	1 cut(s)	352
HpyCH4IV	ACGT	2 cut(s)	49, 180
HpyCH4V	TGCA	3 cut(s)	39, 55, 136
HpyF10VI	GCNNNNNNNGC	4 cut(s)	482, 494, 503, 650
HpyF3I	CTNAG	3 cut(s)	83, 271, 645
HpySE526I	ACGT	2 cut(s)	49, 180
Hsp92II	CATG	1 cut(s)	10
HspAI	GCGC	2 cut(s)	341, 500
Kzo9I	GATC	5 cut(s)	12, 150, 421, 511, 657
LmnI	GCTCC	2 cut(s)	206, 214
Lsp1109I	GCAGC	4 cut(s)	464, 484, 497, 623
LweI	GCATC	3 cut(s)	8, 252, 484
MaeI	CTAG	3 cut(s)	45, 75, 503
MaeII	ACGT	2 cut(s)	49, 180
MalI	GATC	5 cut(s)	14, 152, 423, 513, 659
MboI	GATC	5 cut(s)	12, 150, 421, 511, 657
MboII	GAAGA	6 cut(s)	160, 206, 368, 419, 599, 602
MflI	RGATCY	1 cut(s)	150
MhlI	GDGCHC	1 cut(s)	211
MlsI	TGGCCA	2 cut(s)	5, 307
MluCI	AATT	2 cut(s)	238, 317
MluNI	TGGCCA	2 cut(s)	5, 307
MlyI	GAGTC	1 cut(s)	545
MnlI	CCTC	3 cut(s)	152, 222, 523
Mox20I	TGGCCA	2 cut(s)	5, 307
MscI	TGGCCA	2 cut(s)	5, 307
MseI	TTAA	2 cut(s)	639, 678
Msp20I	TGGCCA	2 cut(s)	5, 307
MspI	CCGG	2 cut(s)	231, 387
MspR9I	CCNGG	2 cut(s)	204, 388
Mva1269I	GAATGC	1 cut(s)	676
MvaI	CCWGG	1 cut(s)	204
MvnI	CGCG	1 cut(s)	629
MwoI	GCNNNNNNNGC	4 cut(s)	482, 494, 503, 650
NciI	CCSGG	1 cut(s)	388
NdeII	GATC	5 cut(s)	12, 150, 421, 511, 657
NheI	GCTAGC	1 cut(s)	502
NlaIII	CATG	1 cut(s)	10
NlaIV	GGNNCC	1 cut(s)	201
PctI	GAATGC	1 cut(s)	676
PflFI	GACNNNGTC	1 cut(s)	554
PkrI	GCNGC	4 cut(s)	454, 487, 499, 613
Ple19I	CGATCG	1 cut(s)	15
PleI	GAGTC	1 cut(s)	545
PpsI	GAGTC	1 cut(s)	545
PshAI	GACNNNNGTC	1 cut(s)	105
Psp124BI	GAGCTC	1 cut(s)	211
Psp6I	CCWGG	1 cut(s)	202
PspGI	CCWGG	1 cut(s)	202
PspN4I	GGNNCC	1 cut(s)	201
PspPI	GGNCC	1 cut(s)	224
PsuI	RGATCY	1 cut(s)	150
PsyI	GACNNNGTC	1 cut(s)	554
PvuI	CGATCG	1 cut(s)	15
RsaI	GTAC	1 cut(s)	88
RsaNI	GTAC	1 cut(s)	87
SacI	GAGCTC	1 cut(s)	211
SaqAI	TTAA	2 cut(s)	639, 678
SatI	GCNGC	4 cut(s)	453, 486, 498, 612
Sau3AI	GATC	5 cut(s)	12, 150, 421, 511, 657
Sau96I	GGNCC	1 cut(s)	224
ScaI	AGTACT	1 cut(s)	88
SchI	GAGTC	1 cut(s)	545
ScrFI	CCNGG	2 cut(s)	204, 388
SduI	GDGCHC	1 cut(s)	211
SetI	ASST	9 cut(s)	52, 76, 183, 211, 384, 405, 528, 646, 701
SfaNI	GCATC	3 cut(s)	8, 252, 484
SinI	GGWCC	1 cut(s)	224
Sse9I	AATT	2 cut(s)	238, 317
SspMI	CTAG	3 cut(s)	45, 75, 503
SstI	GAGCTC	1 cut(s)	211
StyD4I	CCNGG	2 cut(s)	202, 386
StyI	CCWWGG	1 cut(s)	489
TaaI	ACNGT	1 cut(s)	352
TaiI	ACGT	2 cut(s)	52, 183
TaqI	TCGA	2 cut(s)	11, 537
TasI	AATT	2 cut(s)	238, 317
TatI	WGTACW	1 cut(s)	86
Tru1I	TTAA	2 cut(s)	639, 678
Tru9I	TTAA	2 cut(s)	639, 678
TscAI	CASTG	1 cut(s)	357
TseI	GCWGC	4 cut(s)	452, 485, 497, 611
TspGWI	ACGGA	1 cut(s)	647
TspRI	CASTG	1 cut(s)	357
Tth111I	GACNNNGTC	1 cut(s)	554
VpaK11BI	GGWCC	1 cut(s)	224
XapI	RAATTY	1 cut(s)	317
XbaI	TCTAGA	1 cut(s)	44
XspI	CTAG	3 cut(s)	45, 75, 503
ZrmI	AGTACT	1 cut(s)	88

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.