Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0005172

Physical Location & Seq

Genomic Coordinates Reverse (-)

1483402 .. 1484191

Gene Structure 790 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g02570.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 492 bp

ATGGCAAATGTTCATGATGGATCGAACTCTAAGGGTATGTGTGAGAAGATCTTCTGCTGTCTCTGTCCTAAATTTCAATCAAATCATGATGCACACCACAAACTAGCCAAAGGGTTTGGAGCTGAAGCTGCAGCAAATGAGATGGCACGACTGCCTAAGGTAGAGATGGTTCGACGAATAAAGGTTTACGGGGAAAGACAACATCATGTTATTGTGAGCATGAATTCACAAGTTGAGGTAGATAACAAGAAACCAGGTTTGGCTAAACATGATACATTTTCTGACTACATTAACCGCACAAAAATGAAGATCAGAGCTTCTAAGTCCAATGTGGGCATGGAAAAGGTTGCCTCTGGAGAAGATTATGTTTACCAACAAGAGAAGGAAGATGATGGTAACGAGGCATTTTCAGAATTTGTTAATCGCACTAAGATCAAGATTAGGAAGACATCAAGTATTGGAAGCTCAAGGAATATCTCCTTTAAGAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

164

Amino Acids

18.4

Weight (kDa)

9.35

Isoelectric Point (pI)

27.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005172)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g07512 FvH4_6g02570
prunus_persica	Prupe.6G345800_v2.0.a1
pyrus_communis	pycom04g20040 pycom04g20050 pycom04g20060 pycom12g22310 pycom12g22320 pycom12g22330 pycom12g22340
rosa_chinensis	RchiOBHm_Chr3g0450471
rosa_laevigata	RLG00000025728 RLG00000025731
rosa_multiflora	Rmu_co8255291.1_g000001 Rmu_sc0000330.1_g000012 Rmu_sc0005951.1_g000003 Rmu_sc0005951.1_g000005
rosa_roxburghii	Rroxscaffold_6G00428140 Rroxscaffold_6G00428160
rosa_rugosa	Rorug02G0627900 Rorug02G0628000
rosa_samantha	Rh3AG028300 Rh3AG028600 Rh3BG028800 Rh3BG029100 Rh3CG027600 Rh3CG027900 Rh3DG028700 Rh3DG028800
rosa_wichuraiana	Rw3G002190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	295
AclWI	GGATC	1 cut(s)	28
AcsI	RAATTY	3 cut(s)	71, 223, 413
AcuI	CTGAAG	1 cut(s)	144
AgsI	TTSAA	1 cut(s)	77
AjnI	CCWGG	1 cut(s)	253
AjuI	GAANNNNNNNTTGG	2 cut(s)	242, 274
AluBI	AGCT	4 cut(s)	122, 128, 317, 465
AluI	AGCT	4 cut(s)	122, 128, 317, 465
Alw26I	GTCTC	1 cut(s)	65
AlwI	GGATC	1 cut(s)	28
ApeKI	GCWGC	2 cut(s)	128, 131
ApoI	RAATTY	3 cut(s)	71, 223, 413
Asp700I	GAANNNNTTC	1 cut(s)	50
AxyI	CCTNAGG	1 cut(s)	156
BbsI	GAAGAC	1 cut(s)	452
BbvI	GCAGC	2 cut(s)	115, 143
BccI	CCATC	4 cut(s)	11, 136, 160, 386
BciT130I	CCWGG	1 cut(s)	255
BcoDI	GTCTC	1 cut(s)	65
BfaI	CTAG	2 cut(s)	104, 490
BfmI	CTRYAG	1 cut(s)	129
BglII	AGATCT	1 cut(s)	48
BisI	GCNGC	2 cut(s)	129, 132
BlsI	GCNGC	2 cut(s)	130, 133
Bme1390I	CCNGG	1 cut(s)	255
BmrFI	CCNGG	1 cut(s)	255
BmsI	GCATC	1 cut(s)	79
BpiI	GAAGAC	1 cut(s)	452
BpmI	CTGGAG	1 cut(s)	375
BpuEI	CTTGAG	1 cut(s)	451
Bse21I	CCTNAGG	1 cut(s)	156
BseBI	CCWGG	1 cut(s)	255
BseXI	GCAGC	2 cut(s)	115, 143
BsmAI	GTCTC	1 cut(s)	65
Bsp143I	GATC	4 cut(s)	20, 48, 309, 432
BspACI	CCGC	1 cut(s)	295
BspHI	TCATGA	2 cut(s)	13, 85
BspMAI	CTGCAG	1 cut(s)	133
BspPI	GGATC	1 cut(s)	28
BssMI	GATC	4 cut(s)	20, 48, 309, 432
Bst2UI	CCWGG	1 cut(s)	255
BstDEI	CTNAG	4 cut(s)	30, 156, 321, 429
BstKTI	GATC	4 cut(s)	23, 51, 312, 435
BstMAI	GTCTC	1 cut(s)	65
BstMBI	GATC	4 cut(s)	20, 48, 309, 432
BstMWI	GCNNNNNNNGC	1 cut(s)	128
BstNI	CCWGG	1 cut(s)	255
BstSCI	CCNGG	1 cut(s)	253
BstSFI	CTRYAG	1 cut(s)	129
BstV1I	GCAGC	2 cut(s)	115, 143
BstV2I	GAAGAC	1 cut(s)	452
BstX2I	RGATCY	1 cut(s)	48
BstYI	RGATCY	1 cut(s)	48
Bsu36I	CCTNAGG	1 cut(s)	156
CciI	TCATGA	2 cut(s)	13, 85
CsiI	ACCWGGT	1 cut(s)	253
CviAII	CATG	6 cut(s)	14, 86, 206, 220, 269, 337
CviJI	RGCY	6 cut(s)	107, 122, 128, 263, 317, 465
CviKI_1	RGCY	6 cut(s)	107, 122, 128, 263, 317, 465
DdeI	CTNAG	4 cut(s)	30, 156, 321, 429
DpnI	GATC	4 cut(s)	22, 50, 311, 434
DpnII	GATC	4 cut(s)	20, 48, 309, 432
Eco57I	CTGAAG	1 cut(s)	144
Eco81I	CCTNAGG	1 cut(s)	156
EcoRI	GAATTC	1 cut(s)	223
EcoRII	CCWGG	1 cut(s)	253
FaeI	CATG	6 cut(s)	17, 89, 209, 223, 272, 340
FaiI	YATR	8 cut(s)	15, 38, 87, 207, 221, 270, 338, 366
FatI	CATG	6 cut(s)	13, 85, 205, 219, 268, 336
Fnu4HI	GCNGC	2 cut(s)	129, 132
Fsp4HI	GCNGC	2 cut(s)	129, 132
FspBI	CTAG	2 cut(s)	104, 490
GluI	GCNGC	2 cut(s)	129, 132
GsuI	CTGGAG	1 cut(s)	375
Hin1II	CATG	6 cut(s)	17, 89, 209, 223, 272, 340
Hpy166II	GTNNAC	2 cut(s)	187, 370
Hpy188I	TCNGA	3 cut(s)	283, 314, 412
Hpy188III	TCNNGA	4 cut(s)	14, 86, 354, 436
Hpy8I	GTNNAC	2 cut(s)	187, 370
Hpy99I	CGWCG	1 cut(s)	177
HpyAV	CCTTC	1 cut(s)	376
HpyCH4V	TGCA	2 cut(s)	92, 131
HpyF10VI	GCNNNNNNNGC	1 cut(s)	128
HpyF3I	CTNAG	4 cut(s)	30, 156, 321, 429
Hsp92II	CATG	6 cut(s)	17, 89, 209, 223, 272, 340
Kzo9I	GATC	4 cut(s)	20, 48, 309, 432
LmnI	GCTCC	1 cut(s)	119
LpnPI	CCDG	3 cut(s)	240, 267, 339
Lsp1109I	GCAGC	2 cut(s)	115, 143
LweI	GCATC	1 cut(s)	79
MabI	ACCWGGT	1 cut(s)	253
MaeI	CTAG	2 cut(s)	104, 490
MaeIII	GTNAC	1 cut(s)	395
MalI	GATC	4 cut(s)	22, 50, 311, 434
MboI	GATC	4 cut(s)	20, 48, 309, 432
MboII	GAAGA	6 cut(s)	43, 58, 319, 371, 398, 457
MflI	RGATCY	1 cut(s)	48
MluCI	AATT	3 cut(s)	71, 223, 413
MnlI	CCTC	3 cut(s)	229, 361, 394
MroXI	GAANNNNTTC	1 cut(s)	50
MseI	TTAA	3 cut(s)	291, 420, 483
MslI	CAYNNNNRTG	1 cut(s)	302
MspR9I	CCNGG	1 cut(s)	255
MvaI	CCWGG	1 cut(s)	255
MwoI	GCNNNNNNNGC	1 cut(s)	128
NdeII	GATC	4 cut(s)	20, 48, 309, 432
NlaIII	CATG	6 cut(s)	17, 89, 209, 223, 272, 340
PagI	TCATGA	2 cut(s)	13, 85
PdmI	GAANNNNTTC	1 cut(s)	50
PkrI	GCNGC	2 cut(s)	130, 133
Psp6I	CCWGG	1 cut(s)	253
PspGI	CCWGG	1 cut(s)	253
PsrI	GAACNNNNNNTAC	2 cut(s)	153, 185
PstI	CTGCAG	1 cut(s)	133
PsuI	RGATCY	1 cut(s)	48
RseI	CAYNNNNRTG	1 cut(s)	302
SaqAI	TTAA	3 cut(s)	291, 420, 483
SatI	GCNGC	2 cut(s)	129, 132
Sau3AI	GATC	4 cut(s)	20, 48, 309, 432
ScrFI	CCNGG	1 cut(s)	255
SetI	ASST	9 cut(s)	124, 130, 162, 186, 240, 259, 319, 348, 467
SexAI	ACCWGGT	1 cut(s)	253
SfaNI	GCATC	1 cut(s)	79
SfcI	CTRYAG	1 cut(s)	129
SmiMI	CAYNNNNRTG	1 cut(s)	302
SmlI	CTYRAG	1 cut(s)	466
SmoI	CTYRAG	1 cut(s)	466
Sse9I	AATT	3 cut(s)	71, 223, 413
SsiI	CCGC	1 cut(s)	295
SspMI	CTAG	2 cut(s)	104, 490
StyD4I	CCNGG	1 cut(s)	253
TaqI	TCGA	2 cut(s)	23, 172
TasI	AATT	3 cut(s)	71, 223, 413
Tru1I	TTAA	3 cut(s)	291, 420, 483
Tru9I	TTAA	3 cut(s)	291, 420, 483
TseI	GCWGC	2 cut(s)	128, 131
TspDTI	ATGAA	2 cut(s)	236, 320
XapI	RAATTY	3 cut(s)	71, 223, 413
XcmI	CCANNNNNNNNNTGG	1 cut(s)	334
XmnI	GAANNNNTTC	1 cut(s)	50
XspI	CTAG	2 cut(s)	104, 490

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.