Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0005172

Physical Location & Seq

Genomic Coordinates Reverse (-)

1936367 .. 1936867

Gene Structure 501 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G002190.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 501 bp

ATGAGGAGGAGCGTGCATAGCTCAAACTCTAAGTGTGTGTGCAAGAAAATCTTCGGTATTTCTATTACCTGTCCAGTTTGTAAATTGGCACCAACTAATCAAGTTTCGCTGCAAGAGAAACTCAAGCCTAAGGCAGAGATGACTACACAAACCAAGGTTGCCGCTGAGGTGAGTAATGGCAGGGCCAATTTAAAAGTTGACGACAAGCAAAAGCGGCCCAAATTAGAGGCAAAACTTACAAAAGGAGGTAGGACAGCAAGCCTGCAGGGTGACAATGATGCATTTTCTGACTACATTACTCGTGCAAAAATTAGGATCAGAGCTATGTCAAGTGTTGGCATTGAAAAGATTGCCTCTGGATCCGCAGATGCTGTGTATGATACGAAGAAAGAAGATAGCACCAAAGATACATTTTCAGTTTATATCAATCGTGCTAAGATGAAGATCAGAAAAACGTCGAGTATCGGAAGCAGAAAGATCATCTCCTTCAAACGAGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

166

Amino Acids

18.35

Weight (kDa)

10.11

Isoelectric Point (pI)

29.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005172)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g07512 FvH4_6g02570
prunus_persica	Prupe.6G345800_v2.0.a1
pyrus_communis	pycom04g20040 pycom04g20050 pycom04g20060 pycom12g22310 pycom12g22320 pycom12g22330 pycom12g22340
rosa_chinensis	RchiOBHm_Chr3g0450471
rosa_laevigata	RLG00000025728 RLG00000025731
rosa_multiflora	Rmu_co8255291.1_g000001 Rmu_sc0000330.1_g000012 Rmu_sc0005951.1_g000003 Rmu_sc0005951.1_g000005
rosa_roxburghii	Rroxscaffold_6G00428140 Rroxscaffold_6G00428160
rosa_rugosa	Rorug02G0627900 Rorug02G0628000
rosa_samantha	Rh3AG028300 Rh3AG028600 Rh3BG028800 Rh3BG029100 Rh3CG027600 Rh3CG027900 Rh3DG028700 Rh3DG028800
rosa_wichuraiana	Rw3G002190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	88
AciI	CCGC	3 cut(s)	162, 214, 363
AclWI	GGATC	3 cut(s)	323, 354, 367
AgsI	TTSAA	2 cut(s)	344, 490
AluBI	AGCT	2 cut(s)	21, 323
AluI	AGCT	2 cut(s)	21, 323
AlwI	GGATC	3 cut(s)	323, 354, 367
AlwNI	CAGNNNCTG	1 cut(s)	371
AoxI	GGCC	2 cut(s)	183, 215
ApeKI	GCWGC	1 cut(s)	109
Asp700I	GAANNNNTTC	1 cut(s)	50
AspS9I	GGNCC	2 cut(s)	183, 216
AsuHPI	GGTGA	2 cut(s)	181, 281
AxyI	CCTNAGG	1 cut(s)	129
BamHI	GGATCC	1 cut(s)	359
BanI	GGYRCC	1 cut(s)	88
BauI	CACGAG	1 cut(s)	300
BbvCI	CCTCAGC	1 cut(s)	165
BbvI	GCAGC	1 cut(s)	96
BfmI	CTRYAG	1 cut(s)	263
BisI	GCNGC	3 cut(s)	110, 162, 215
BlsI	GCNGC	3 cut(s)	111, 163, 216
BmgT120I	GGNCC	2 cut(s)	183, 216
BmiI	GGNNCC	2 cut(s)	90, 361
BmsI	GCATC	2 cut(s)	268, 358
Bpu10I	CCTNAGC	1 cut(s)	165
BpuEI	CTTGAG	1 cut(s)	107
BsaBI	GATNNNNATC	1 cut(s)	443
BsaJI	CCNNGG	1 cut(s)	153
Bse1I	ACTGG	1 cut(s)	74
Bse21I	CCTNAGG	1 cut(s)	129
Bse8I	GATNNNNATC	1 cut(s)	443
BseDI	CCNNGG	1 cut(s)	153
BseJI	GATNNNNATC	1 cut(s)	443
BseMII	CTCAG	1 cut(s)	156
BseNI	ACTGG	1 cut(s)	74
BseRI	GAGGAG	2 cut(s)	19, 22
BseXI	GCAGC	1 cut(s)	96
BshFI	GGCC	2 cut(s)	185, 217
BshNI	GGYRCC	1 cut(s)	88
BsnI	GGCC	2 cut(s)	185, 217
Bsp143I	GATC	4 cut(s)	315, 359, 444, 477
BspACI	CCGC	3 cut(s)	162, 214, 363
BspANI	GGCC	2 cut(s)	185, 217
BspCNI	CTCAG	1 cut(s)	157
BspLI	GGNNCC	2 cut(s)	90, 361
BspMAI	CTGCAG	1 cut(s)	267
BspPI	GGATC	3 cut(s)	323, 354, 367
BspT107I	GGYRCC	1 cut(s)	88
BsrI	ACTGG	1 cut(s)	74
BssECI	CCNNGG	1 cut(s)	153
BssMI	GATC	4 cut(s)	315, 359, 444, 477
BssSI	CACGAG	1 cut(s)	300
BssT1I	CCWWGG	1 cut(s)	153
Bst2BI	CACGAG	1 cut(s)	300
BstC8I	GCNNGC	3 cut(s)	14, 259, 263
BstDEI	CTNAG	4 cut(s)	30, 129, 165, 435
BstKTI	GATC	4 cut(s)	318, 362, 447, 480
BstMBI	GATC	4 cut(s)	315, 359, 444, 477
BstMWI	GCNNNNNNNGC	2 cut(s)	18, 214
BstSFI	CTRYAG	1 cut(s)	263
BstV1I	GCAGC	1 cut(s)	96
BstX2I	RGATCY	1 cut(s)	359
BstYI	RGATCY	1 cut(s)	359
Bsu36I	CCTNAGG	1 cut(s)	129
BsuRI	GGCC	2 cut(s)	185, 217
Cac8I	GCNNGC	3 cut(s)	14, 259, 263
CaiI	CAGNNNCTG	1 cut(s)	371
Cfr13I	GGNCC	2 cut(s)	183, 216
CviJI	RGCY	6 cut(s)	21, 127, 185, 217, 261, 323
CviKI_1	RGCY	6 cut(s)	21, 127, 185, 217, 261, 323
DdeI	CTNAG	4 cut(s)	30, 129, 165, 435
DpnI	GATC	4 cut(s)	317, 361, 446, 479
DpnII	GATC	4 cut(s)	315, 359, 444, 477
DraI	TTTAAA	1 cut(s)	192
Eco130I	CCWWGG	1 cut(s)	153
Eco81I	CCTNAGG	1 cut(s)	129
EcoT14I	CCWWGG	1 cut(s)	153
EcoT22I	ATGCAT	1 cut(s)	283
ErhI	CCWWGG	1 cut(s)	153
FaiI	YATR	4 cut(s)	18, 326, 378, 423
FalI	AAGNNNNNCTT	2 cut(s)	35, 67
Fnu4HI	GCNGC	3 cut(s)	110, 162, 215
Fsp4HI	GCNGC	3 cut(s)	110, 162, 215
GluI	GCNGC	3 cut(s)	110, 162, 215
HaeIII	GGCC	2 cut(s)	185, 217
HincII	GTYRAC	1 cut(s)	199
HindII	GTYRAC	1 cut(s)	199
HphI	GGTGA	2 cut(s)	181, 281
Hpy166II	GTNNAC	1 cut(s)	199
Hpy188I	TCNGA	4 cut(s)	289, 320, 449, 467
Hpy188III	TCNNGA	1 cut(s)	357
Hpy8I	GTNNAC	1 cut(s)	199
Hpy99I	CGWCG	1 cut(s)	460
HpyAV	CCTTC	1 cut(s)	496
HpyCH4IV	ACGT	1 cut(s)	455
HpyCH4V	TGCA	6 cut(s)	16, 42, 112, 265, 281, 305
HpyF10VI	GCNNNNNNNGC	2 cut(s)	18, 214
HpyF3I	CTNAG	4 cut(s)	30, 129, 165, 435
HpySE526I	ACGT	1 cut(s)	455
Kzo9I	GATC	4 cut(s)	315, 359, 444, 477
LmnI	GCTCC	1 cut(s)	9
LpnPI	CCDG	6 cut(s)	82, 87, 166, 251, 275, 342
Lsp1109I	GCAGC	1 cut(s)	96
LweI	GCATC	2 cut(s)	268, 358
MaeII	ACGT	1 cut(s)	455
MaeIII	GTNAC	1 cut(s)	269
MalI	GATC	4 cut(s)	317, 361, 446, 479
MboI	GATC	4 cut(s)	315, 359, 444, 477
MboII	GAAGA	4 cut(s)	43, 397, 404, 454
MflI	RGATCY	1 cut(s)	359
MluCI	AATT	4 cut(s)	83, 187, 221, 309
MnlI	CCTC	4 cut(s)	160, 220, 239, 364
Mph1103I	ATGCAT	1 cut(s)	283
MroXI	GAANNNNTTC	1 cut(s)	50
MseI	TTAA	1 cut(s)	191
MspA1I	CMGCKG	1 cut(s)	164
MwoI	GCNNNNNNNGC	2 cut(s)	18, 214
NdeII	GATC	4 cut(s)	315, 359, 444, 477
NlaIV	GGNNCC	2 cut(s)	90, 361
NmuCI	GTSAC	1 cut(s)	269
NsiI	ATGCAT	1 cut(s)	283
PdmI	GAANNNNTTC	1 cut(s)	50
PkrI	GCNGC	3 cut(s)	111, 163, 216
PspN4I	GGNNCC	2 cut(s)	90, 361
PspPI	GGNCC	2 cut(s)	183, 216
PstI	CTGCAG	1 cut(s)	267
PstNI	CAGNNNCTG	1 cut(s)	371
PsuI	RGATCY	1 cut(s)	359
SaqAI	TTAA	1 cut(s)	191
SatI	GCNGC	3 cut(s)	110, 162, 215
Sau3AI	GATC	4 cut(s)	315, 359, 444, 477
Sau96I	GGNCC	2 cut(s)	183, 216
SbfI	CCTGCAGG	1 cut(s)	267
SdaI	CCTGCAGG	1 cut(s)	267
SetI	ASST	7 cut(s)	23, 71, 159, 171, 250, 325, 458
SfaNI	GCATC	2 cut(s)	268, 358
SfcI	CTRYAG	1 cut(s)	263
SmlI	CTYRAG	1 cut(s)	122
SmoI	CTYRAG	1 cut(s)	122
Sse8387I	CCTGCAGG	1 cut(s)	267
Sse9I	AATT	4 cut(s)	83, 187, 221, 309
SsiI	CCGC	3 cut(s)	162, 214, 363
StyI	CCWWGG	1 cut(s)	153
TaiI	ACGT	1 cut(s)	458
TaqI	TCGA	1 cut(s)	458
TasI	AATT	4 cut(s)	83, 187, 221, 309
TauI	GCSGC	2 cut(s)	164, 217
Tru1I	TTAA	1 cut(s)	191
Tru9I	TTAA	1 cut(s)	191
TseFI	GTSAC	1 cut(s)	269
TseI	GCWGC	1 cut(s)	109
Tsp45I	GTSAC	1 cut(s)	269
TspDTI	ATGAA	1 cut(s)	455
XmnI	GAANNNNTTC	1 cut(s)	50
Zsp2I	ATGCAT	1 cut(s)	283

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.