No description available
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_2g07512 FvH4_6g02570 |
| prunus_persica | Prupe.6G345800_v2.0.a1 |
| pyrus_communis | pycom04g20040 pycom04g20050 pycom04g20060 pycom12g22310 pycom12g22320 pycom12g22330 pycom12g22340 |
| rosa_chinensis | RchiOBHm_Chr3g0450471 |
| rosa_laevigata | RLG00000025728 RLG00000025731 |
| rosa_multiflora | Rmu_co8255291.1_g000001 Rmu_sc0000330.1_g000012 Rmu_sc0005951.1_g000003 Rmu_sc0005951.1_g000005 |
| rosa_roxburghii | Rroxscaffold_6G00428140 Rroxscaffold_6G00428160 |
| rosa_rugosa | Rorug02G0627900 Rorug02G0628000 |
| rosa_samantha | Rh3AG028300 Rh3AG028600 Rh3BG028800 Rh3BG029100 Rh3CG027600 Rh3CG027900 Rh3DG028700 Rh3DG028800 |
| rosa_wichuraiana | Rw3G002190 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 1 cut(s) | 201 |
| AclWI | GGATC | 2 cut(s) | 192, 205 |
| AcuI | CTGAAG | 1 cut(s) | 164 |
| AflIII | ACRYGT | 1 cut(s) | 7 |
| AgsI | TTSAA | 3 cut(s) | 133, 182, 328 |
| AluBI | AGCT | 1 cut(s) | 161 |
| AluI | AGCT | 1 cut(s) | 161 |
| Alw21I | GWGCWC | 2 cut(s) | 18, 64 |
| AlwI | GGATC | 2 cut(s) | 192, 205 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 209 |
| BamHI | GGATCC | 1 cut(s) | 197 |
| Bbv12I | GWGCWC | 2 cut(s) | 18, 64 |
| BccI | CCATC | 1 cut(s) | 73 |
| BclI | TGATCA | 1 cut(s) | 153 |
| BfaI | CTAG | 1 cut(s) | 69 |
| BmiI | GGNNCC | 1 cut(s) | 199 |
| BmsI | GCATC | 1 cut(s) | 196 |
| BsaBI | GATNNNNATC | 1 cut(s) | 281 |
| Bse8I | GATNNNNATC | 1 cut(s) | 281 |
| BseJI | GATNNNNATC | 1 cut(s) | 281 |
| BseMII | CTCAG | 1 cut(s) | 264 |
| BsiHKAI | GWGCWC | 2 cut(s) | 18, 64 |
| Bsp1286I | GDGCHC | 2 cut(s) | 18, 64 |
| Bsp143I | GATC | 4 cut(s) | 153, 197, 282, 315 |
| BspACI | CCGC | 1 cut(s) | 201 |
| BspCNI | CTCAG | 1 cut(s) | 265 |
| BspLI | GGNNCC | 1 cut(s) | 199 |
| BspPI | GGATC | 2 cut(s) | 192, 205 |
| BspQI | GCTCTTC | 1 cut(s) | 119 |
| BssMI | GATC | 4 cut(s) | 153, 197, 282, 315 |
| Bst6I | CTCTTC | 1 cut(s) | 119 |
| BstDEI | CTNAG | 2 cut(s) | 19, 273 |
| BstKTI | GATC | 4 cut(s) | 156, 200, 285, 318 |
| BstMBI | GATC | 4 cut(s) | 153, 197, 282, 315 |
| BstNSI | RCATGY | 1 cut(s) | 11 |
| BstX2I | RGATCY | 1 cut(s) | 197 |
| BstYI | RGATCY | 1 cut(s) | 197 |
| CaiI | CAGNNNCTG | 1 cut(s) | 209 |
| CviAII | CATG | 1 cut(s) | 8 |
| CviJI | RGCY | 2 cut(s) | 112, 161 |
| CviKI_1 | RGCY | 2 cut(s) | 112, 161 |
| DdeI | CTNAG | 2 cut(s) | 19, 273 |
| DpnI | GATC | 4 cut(s) | 155, 199, 284, 317 |
| DpnII | GATC | 4 cut(s) | 153, 197, 282, 315 |
| Eam1104I | CTCTTC | 1 cut(s) | 119 |
| EarI | CTCTTC | 1 cut(s) | 119 |
| Eco57I | CTGAAG | 1 cut(s) | 164 |
| FaeI | CATG | 1 cut(s) | 11 |
| FaiI | YATR | 5 cut(s) | 9, 101, 164, 216, 261 |
| FatI | CATG | 1 cut(s) | 7 |
| FbaI | TGATCA | 1 cut(s) | 153 |
| FspBI | CTAG | 1 cut(s) | 69 |
| Hin1II | CATG | 1 cut(s) | 11 |
| Hpy188I | TCNGA | 2 cut(s) | 158, 287 |
| Hpy188III | TCNNGA | 2 cut(s) | 118, 195 |
| Hpy99I | CGWCG | 1 cut(s) | 298 |
| HpyAV | CCTTC | 2 cut(s) | 98, 334 |
| HpyCH4IV | ACGT | 1 cut(s) | 293 |
| HpyF3I | CTNAG | 2 cut(s) | 19, 273 |
| HpySE526I | ACGT | 1 cut(s) | 293 |
| Hsp92II | CATG | 1 cut(s) | 11 |
| Ksp22I | TGATCA | 1 cut(s) | 153 |
| Kzo9I | GATC | 4 cut(s) | 153, 197, 282, 315 |
| LguI | GCTCTTC | 1 cut(s) | 119 |
| LmnI | GCTCC | 1 cut(s) | 67 |
| LpnPI | CCDG | 2 cut(s) | 92, 180 |
| LweI | GCATC | 1 cut(s) | 196 |
| MaeI | CTAG | 1 cut(s) | 69 |
| MaeII | ACGT | 1 cut(s) | 293 |
| MalI | GATC | 4 cut(s) | 155, 199, 284, 317 |
| MboI | GATC | 4 cut(s) | 153, 197, 282, 315 |
| MboII | GAAGA | 4 cut(s) | 106, 235, 242, 292 |
| MfeI | CAATTG | 1 cut(s) | 106 |
| MflI | RGATCY | 1 cut(s) | 197 |
| MhlI | GDGCHC | 2 cut(s) | 18, 64 |
| MluCI | AATT | 1 cut(s) | 106 |
| MnlI | CCTC | 2 cut(s) | 117, 202 |
| MunI | CAATTG | 1 cut(s) | 106 |
| NdeII | GATC | 4 cut(s) | 153, 197, 282, 315 |
| NlaIII | CATG | 1 cut(s) | 11 |
| NlaIV | GGNNCC | 1 cut(s) | 199 |
| NspI | RCATGY | 1 cut(s) | 11 |
| PciI | ACATGT | 1 cut(s) | 7 |
| PciSI | GCTCTTC | 1 cut(s) | 119 |
| PscI | ACATGT | 1 cut(s) | 7 |
| PspN4I | GGNNCC | 1 cut(s) | 199 |
| PstNI | CAGNNNCTG | 1 cut(s) | 209 |
| PsuI | RGATCY | 1 cut(s) | 197 |
| SapI | GCTCTTC | 1 cut(s) | 119 |
| Sau3AI | GATC | 4 cut(s) | 153, 197, 282, 315 |
| SduI | GDGCHC | 2 cut(s) | 18, 64 |
| SetI | ASST | 3 cut(s) | 128, 163, 296 |
| SfaNI | GCATC | 1 cut(s) | 196 |
| SgeI | CNNG | 9 cut(s) | 20, 40, 81, 91, 130, 180, 207, 281, 309 |
| Sse9I | AATT | 1 cut(s) | 106 |
| SsiI | CCGC | 1 cut(s) | 201 |
| SspMI | CTAG | 1 cut(s) | 69 |
| TaiI | ACGT | 1 cut(s) | 296 |
| TaqI | TCGA | 2 cut(s) | 119, 296 |
| TasI | AATT | 1 cut(s) | 106 |
| TspDTI | ATGAA | 2 cut(s) | 17, 293 |
| XceI | RCATGY | 1 cut(s) | 11 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 53 |
| XspI | CTAG | 1 cut(s) | 69 |