Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0005172

Physical Location & Seq

Genomic Coordinates Forward (+)

23262172 .. 23264860

Gene Structure 2689 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g22320.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1128 bp

ATGGGAAATAGTCAAGCAAAACAGCAAGCACGCCGCAAGCATTTCGAATTTCCCGCCTCTACTGCTCCAAACACTTCACTTCCGAGCCATGATCATACTCGCTATTCGAATAATATCCAGGTCAAACTAACCAATGTGTCTGGAGCTGAAGCTGCGCAGATTAGAACGGCACAAGTGCACGAGGTAGAGATGAGAATGGAAGACAATGATGCATTTTCTGACTACATAAACCGCACAAAATATAAGATCAGAGCTACGACCTCCAATGCTGGTCTCGAGAAGGTTGCATCCATAGCAGATGGTGTTTATGAAACAAAGCAAGACGATAATGGATATGAAATGTTTACGGATTTTGTCAATCGCTCTAAGTTTAAGATTAGAAAGACATCCAGCATCGGAAGCAGAAACAACATCTCCTTTAAGAACAAGCTTCAGACAGACAATGTTTCCCCTTCATTATTTCTGCATATATTTTTAGTTTTCGAGCAAGGATCGCAACAATATGCTCCCAACATACCTAACTTCTCCACCCATCTTACAAATAAGCTCAAGGTCTCTCATCTTTTCATTAAAGCCAGCGAAAAATACTTCTACCATTCTTCATTAAGCTATCAAATTATTTCTTCTCCTAAAAACCAAATGGGAAAAAGTCAGCATAGCTCAAACTCCAAGTGTTTGTGCAAGCACATCTTCAGTTCTCCTTGCCCCATTTGCAAATTGGCAGCAGCACCAATTCATGCTTCAAAGCTGGAGAAAAACGAGAATAAAGGAAAGATGACTCCACCAACGAAGGTTCTTGCTGAGCCGAGTCATGCCAAGGCTAGTTCAAAAGTTGAGAAGCGAAAGTCCAAACTAGTGCCACAAATTACGAAAGCAAGTAGGACAATAAGTCTGGGTTACAATGATGCATTTTCTGACTACATTAATCGTGCAAGACTTAGGATCCAAGCTATGTCCAACGTTAGAATGGAGAAGATTGCCTCCAGATCAAGAGATGATGGATATGATACAAAGAAAGAAGACGATTCAAAAGATGCATTTTCCGATTATATAAATCGTGCGAAGATGAGGATCAGAAAGACATCAAGCATTGGAAGTAGAAAGATTTTCTCCTTCAAACGAGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

376

Amino Acids

42.48

Weight (kDa)

9.89

Isoelectric Point (pI)

42.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005172)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g07512 FvH4_6g02570
prunus_persica	Prupe.6G345800_v2.0.a1
pyrus_communis	pycom04g20040 pycom04g20050 pycom04g20060 pycom12g22310 pycom12g22320 pycom12g22330 pycom12g22340
rosa_chinensis	RchiOBHm_Chr3g0450471
rosa_laevigata	RLG00000025728 RLG00000025731
rosa_multiflora	Rmu_co8255291.1_g000001 Rmu_sc0000330.1_g000012 Rmu_sc0005951.1_g000003 Rmu_sc0005951.1_g000005
rosa_roxburghii	Rroxscaffold_6G00428140 Rroxscaffold_6G00428160
rosa_rugosa	Rorug02G0627900 Rorug02G0628000
rosa_samantha	Rh3AG028300 Rh3AG028600 Rh3BG028800 Rh3BG029100 Rh3CG027600 Rh3CG027900 Rh3DG028700 Rh3DG028800
rosa_wichuraiana	Rw3G002190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	156
AciI	CCGC	3 cut(s)	34, 54, 232
AclI	AACGTT	1 cut(s)	960
AclWI	GGATC	4 cut(s)	499, 937, 950, 1079
AcsI	RAATTY	1 cut(s)	47
AcuI	CTGAAG	3 cut(s)	168, 416, 676
AgsI	TTSAA	4 cut(s)	744, 828, 1029, 1117
AhdI	GACNNNNNGTC	1 cut(s)	888
AhlI	ACTAGT	1 cut(s)	853
AjnI	CCWGG	1 cut(s)	117
AjuI	GAANNNNNNNTTGG	2 cut(s)	724, 756
AluBI	AGCT	9 cut(s)	146, 152, 254, 430, 547, 609, 660, 748, 950
AluI	AGCT	9 cut(s)	146, 152, 254, 430, 547, 609, 660, 748, 950
Alw21I	GWGCWC	1 cut(s)	180
Alw26I	GTCTC	2 cut(s)	278, 559
Alw44I	GTGCAC	1 cut(s)	176
AlwI	GGATC	4 cut(s)	499, 937, 950, 1079
Ama87I	CYCGRG	1 cut(s)	275
ApaLI	GTGCAC	1 cut(s)	176
ApeKI	GCWGC	3 cut(s)	152, 722, 725
ApoI	RAATTY	1 cut(s)	47
AseI	ATTAAT	1 cut(s)	924
AspLEI	GCGC	1 cut(s)	157
AsuII	TTCGAA	2 cut(s)	45, 107
AvaI	CYCGRG	1 cut(s)	275
BaeGI	GKGCMC	1 cut(s)	180
BamHI	GGATCC	1 cut(s)	942
BauI	CACGAG	1 cut(s)	179
BbsI	GAAGAC	2 cut(s)	207, 1026
Bbv12I	GWGCWC	1 cut(s)	180
BbvI	GCAGC	3 cut(s)	139, 734, 737
BccI	CCATC	3 cut(s)	293, 540, 992
BceAI	ACGGC	1 cut(s)	183
BcgI	CGANNNNNNTGC	4 cut(s)	25, 59, 266, 300
BciT130I	CCWGG	1 cut(s)	119
BclI	TGATCA	1 cut(s)	91
BcoDI	GTCTC	2 cut(s)	278, 559
BcuI	ACTAGT	1 cut(s)	853
BfaI	CTAG	2 cut(s)	822, 854
BisI	GCNGC	4 cut(s)	34, 153, 723, 726
BlpI	GCTNAGC	1 cut(s)	801
BlsI	GCNGC	4 cut(s)	35, 154, 724, 727
Bme1390I	CCNGG	1 cut(s)	119
BmeRI	GACNNNNNGTC	1 cut(s)	888
BmeT110I	CYCGRG	1 cut(s)	275
BmiI	GGNNCC	1 cut(s)	944
BmrFI	CCNGG	1 cut(s)	119
BmsI	GCATC	5 cut(s)	199, 296, 402, 895, 1024
BpiI	GAAGAC	2 cut(s)	207, 1026
BpmI	CTGGAG	3 cut(s)	162, 770, 967
Bpu1102I	GCTNAGC	1 cut(s)	801
Bpu14I	TTCGAA	2 cut(s)	45, 107
BpuEI	CTTGAG	1 cut(s)	533
BsaBI	GATNNNNATC	1 cut(s)	1070
BsaI	GGTCTC	2 cut(s)	278, 559
BsaJI	CCNNGG	1 cut(s)	816
BsaXI	ACNNNNNCTCC	2 cut(s)	398, 428
Bse8I	GATNNNNATC	1 cut(s)	1070
BseBI	CCWGG	1 cut(s)	119
BseDI	CCNNGG	1 cut(s)	816
BseGI	GGATG	2 cut(s)	287, 386
BseJI	GATNNNNATC	1 cut(s)	1070
BseMII	CTCAG	1 cut(s)	792
BseSI	GKGCMC	1 cut(s)	180
BseXI	GCAGC	3 cut(s)	139, 734, 737
BsiHKAI	GWGCWC	1 cut(s)	180
BsiHKCI	CYCGRG	1 cut(s)	275
BsmAI	GTCTC	2 cut(s)	278, 559
Bso31I	GGTCTC	2 cut(s)	278, 559
BsoBI	CYCGRG	1 cut(s)	275
Bsp119I	TTCGAA	2 cut(s)	45, 107
Bsp1286I	GDGCHC	1 cut(s)	180
Bsp143I	GATC	6 cut(s)	91, 246, 491, 942, 986, 1071
Bsp1720I	GCTNAGC	1 cut(s)	801
BspACI	CCGC	3 cut(s)	34, 54, 232
BspCNI	CTCAG	1 cut(s)	793
BspLI	GGNNCC	1 cut(s)	944
BspPI	GGATC	4 cut(s)	499, 937, 950, 1079
BspT104I	TTCGAA	2 cut(s)	45, 107
BspTNI	GGTCTC	2 cut(s)	278, 559
BssECI	CCNNGG	1 cut(s)	816
BssMI	GATC	6 cut(s)	91, 246, 491, 942, 986, 1071
BssSI	CACGAG	1 cut(s)	179
BssT1I	CCWWGG	1 cut(s)	816
Bst2BI	CACGAG	1 cut(s)	179
Bst2UI	CCWGG	1 cut(s)	119
BstBI	TTCGAA	2 cut(s)	45, 107
BstC8I	GCNNGC	5 cut(s)	27, 31, 38, 577, 683
BstDEI	CTNAG	3 cut(s)	366, 801, 938
BstF5I	GGATG	2 cut(s)	287, 386
BstHHI	GCGC	1 cut(s)	157
BstKTI	GATC	6 cut(s)	94, 249, 494, 945, 989, 1074
BstMAI	GTCTC	2 cut(s)	278, 559
BstMBI	GATC	6 cut(s)	91, 246, 491, 942, 986, 1071
BstMWI	GCNNNNNNNGC	6 cut(s)	62, 152, 293, 399, 493, 711
BstNI	CCWGG	1 cut(s)	119
BstSCI	CCNGG	1 cut(s)	117
BstSLI	GKGCMC	1 cut(s)	180
BstV1I	GCAGC	3 cut(s)	139, 734, 737
BstV2I	GAAGAC	2 cut(s)	207, 1026
BstX2I	RGATCY	1 cut(s)	942
BstYI	RGATCY	1 cut(s)	942
BtsCI	GGATG	2 cut(s)	287, 386
Cac8I	GCNNGC	5 cut(s)	27, 31, 38, 577, 683
CfoI	GCGC	1 cut(s)	157
CviAII	CATG	3 cut(s)	89, 737, 812
DdeI	CTNAG	3 cut(s)	366, 801, 938
DpnI	GATC	6 cut(s)	93, 248, 493, 944, 988, 1073
DpnII	GATC	6 cut(s)	91, 246, 491, 942, 986, 1071
DriI	GACNNNNNGTC	1 cut(s)	888
Eam1105I	GACNNNNNGTC	1 cut(s)	888
Eco130I	CCWWGG	1 cut(s)	816
Eco31I	GGTCTC	2 cut(s)	278, 559
Eco57I	CTGAAG	3 cut(s)	168, 416, 676
Eco88I	CYCGRG	1 cut(s)	275
EcoRII	CCWGG	1 cut(s)	117
EcoT14I	CCWWGG	1 cut(s)	816
EcoT22I	ATGCAT	3 cut(s)	214, 910, 1039
ErhI	CCWWGG	1 cut(s)	816
FaeI	CATG	3 cut(s)	92, 740, 815
FalI	AAGNNNNNCTT	2 cut(s)	674, 706
FatI	CATG	3 cut(s)	88, 736, 811
FauI	CCCGC	1 cut(s)	61
FbaI	TGATCA	1 cut(s)	91
Fnu4HI	GCNGC	4 cut(s)	34, 153, 723, 726
FokI	GGATG	2 cut(s)	274, 373
Fsp4HI	GCNGC	4 cut(s)	34, 153, 723, 726
FspBI	CTAG	2 cut(s)	822, 854
FspI	TGCGCA	1 cut(s)	156
GlaI	GCGC	1 cut(s)	156
GluI	GCNGC	4 cut(s)	34, 153, 723, 726
GsuI	CTGGAG	3 cut(s)	162, 770, 967
HhaI	GCGC	1 cut(s)	157
Hin1II	CATG	3 cut(s)	92, 740, 815
Hin6I	GCGC	1 cut(s)	155
HinP1I	GCGC	1 cut(s)	155
HindIII	AAGCTT	1 cut(s)	428
HinfI	GANTC	3 cut(s)	778, 808, 1025
Hpy166II	GTNNAC	2 cut(s)	178, 345
Hpy188I	TCNGA	8 cut(s)	84, 220, 251, 398, 435, 916, 1045, 1076
Hpy188III	TCNNGA	5 cut(s)	141, 275, 277, 984, 990
Hpy8I	GTNNAC	2 cut(s)	178, 345
HpyAV	CCTTC	4 cut(s)	274, 462, 784, 1123
HpyCH4IV	ACGT	1 cut(s)	960
HpyCH4V	TGCA	9 cut(s)	178, 212, 287, 466, 681, 714, 908, 932, 1037
HpyF10VI	GCNNNNNNNGC	6 cut(s)	62, 152, 293, 399, 493, 711
HpyF3I	CTNAG	3 cut(s)	366, 801, 938
HpySE526I	ACGT	1 cut(s)	960
Hsp92II	CATG	3 cut(s)	92, 740, 815
HspAI	GCGC	1 cut(s)	155
Ksp22I	TGATCA	1 cut(s)	91
Kzo9I	GATC	6 cut(s)	91, 246, 491, 942, 986, 1071
LmnI	GCTCC	3 cut(s)	70, 143, 511
LpnPI	CCDG	9 cut(s)	104, 126, 131, 255, 403, 589, 734, 878, 997
Lsp1109I	GCAGC	3 cut(s)	139, 734, 737
LweI	GCATC	5 cut(s)	199, 296, 402, 895, 1024
MaeI	CTAG	2 cut(s)	822, 854
MaeII	ACGT	1 cut(s)	960
MaeIII	GTNAC	1 cut(s)	896
MalI	GATC	6 cut(s)	93, 248, 493, 944, 988, 1073
MboI	GATC	6 cut(s)	91, 246, 491, 942, 986, 1071
MboII	GAAGA	7 cut(s)	212, 591, 615, 682, 985, 1031, 1075
MflI	RGATCY	1 cut(s)	942
MhlI	GDGCHC	1 cut(s)	180
MluCI	AATT	5 cut(s)	47, 615, 716, 732, 864
MlyI	GAGTC	2 cut(s)	772, 817
MmeI	TCCRAC	1 cut(s)	981
MnlI	CCTC	5 cut(s)	67, 175, 271, 991, 1062
Mph1103I	ATGCAT	3 cut(s)	214, 910, 1039
MseI	TTAA	5 cut(s)	372, 420, 570, 605, 924
MspR9I	CCNGG	1 cut(s)	119
MvaI	CCWGG	1 cut(s)	119
MwoI	GCNNNNNNNGC	6 cut(s)	62, 152, 293, 399, 493, 711
NdeII	GATC	6 cut(s)	91, 246, 491, 942, 986, 1071
NlaIII	CATG	3 cut(s)	92, 740, 815
NlaIV	GGNNCC	1 cut(s)	944
NmeAIII	GCCGAG	1 cut(s)	831
NsbI	TGCGCA	1 cut(s)	156
NsiI	ATGCAT	3 cut(s)	214, 910, 1039
NspV	TTCGAA	2 cut(s)	45, 107
PaeR7I	CTCGAG	1 cut(s)	275
PfeI	GAWTC	1 cut(s)	1025
PkrI	GCNGC	4 cut(s)	35, 154, 724, 727
PleI	GAGTC	2 cut(s)	772, 816
PpsI	GAGTC	2 cut(s)	772, 816
PshBI	ATTAAT	1 cut(s)	924
Psp1406I	AACGTT	1 cut(s)	960
Psp6I	CCWGG	1 cut(s)	117
PspGI	CCWGG	1 cut(s)	117
PspN4I	GGNNCC	1 cut(s)	944
PsuI	RGATCY	1 cut(s)	942
SaqAI	TTAA	5 cut(s)	372, 420, 570, 605, 924
SatI	GCNGC	4 cut(s)	34, 153, 723, 726
Sau3AI	GATC	6 cut(s)	91, 246, 491, 942, 986, 1071
SchI	GAGTC	2 cut(s)	772, 817
ScrFI	CCNGG	1 cut(s)	119
SduI	GDGCHC	1 cut(s)	180
SfaNI	GCATC	5 cut(s)	199, 296, 402, 895, 1024
Sfr274I	CTCGAG	1 cut(s)	275
SfuI	TTCGAA	2 cut(s)	45, 107
SlaI	CTCGAG	1 cut(s)	275
SmlI	CTYRAG	2 cut(s)	275, 548
SmoI	CTYRAG	2 cut(s)	275, 548
SpeI	ACTAGT	1 cut(s)	853
Sse9I	AATT	5 cut(s)	47, 615, 716, 732, 864
SsiI	CCGC	3 cut(s)	34, 54, 232
SspMI	CTAG	2 cut(s)	822, 854
StyD4I	CCNGG	1 cut(s)	117
StyI	CCWWGG	1 cut(s)	816
TaiI	ACGT	1 cut(s)	963
TaqI	TCGA	4 cut(s)	45, 107, 276, 483
TasI	AATT	5 cut(s)	47, 615, 716, 732, 864
TauI	GCSGC	1 cut(s)	36
TfiI	GAWTC	1 cut(s)	1025
Tru1I	TTAA	5 cut(s)	372, 420, 570, 605, 924
Tru9I	TTAA	5 cut(s)	372, 420, 570, 605, 924
TseI	GCWGC	3 cut(s)	152, 722, 725
TspDTI	ATGAA	6 cut(s)	324, 351, 444, 556, 591, 725
TspGWI	ACGGA	1 cut(s)	362
VneI	GTGCAC	1 cut(s)	176
VspI	ATTAAT	1 cut(s)	924
XapI	RAATTY	1 cut(s)	47
XcmI	CCANNNNNNNNNTGG	2 cut(s)	715, 964
XhoI	CTCGAG	1 cut(s)	275
XspI	CTAG	2 cut(s)	822, 854
Zsp2I	ATGCAT	3 cut(s)	214, 910, 1039

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.