Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0005172

Physical Location & Seq

Genomic Coordinates Reverse (-)

1984756 .. 1985328

Gene Structure 573 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ41780

Sequence Viewer

CDS Protein Promoter (2k)

Length: 573 bp

ATGACCTCTCTATCCCTTTCAATTTCTCTAACTCACATTCCTAGAGAACTAGTTGCCTCTTTTGTAATCTCTTACATATCAATGGAAAATGGTCATGACGGATCAAACTCCAAGGGTATGTGTGAGAAGATCTTCAGCTGTCTCTGCCCAAATTTTCAATCAAACCATCATGCACACCACAAACTAGCCAATGGGTCCGGAGCTGAAGCTGTGGCGAATGATATGGCAAGAGTGCCCAAGGCAGAGATGGTTCGACCTACAAGGGTTTATGGGCAAAGACAACATCATGTTATTGTGAGCATGGATTCACAAGTTGAGGTAGATAACAAGACACCAGGTTTGGATAAAAATGATACATTTTCTGAATACATTAACCGCACAAAATTTAAGATCAGAGCTTCTAAGTCCAATGTGGGAAAGGAGAAGGTTGCCTCCGGAGAAGATCATGTTAAAGAAAAAGAGAAGGAAGATGATGGTAAGGATGTATTTTCAGATTTTGTTAATCGCGCTAAGATTAAGATTAGGAAGACATCAAGTTTTGGAAGCAAAATGAATATCTCCTTTAAGAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GIDE zf-C3HC4_3

Protein Analysis

190

Amino Acids

21.2

Weight (kDa)

9.2

Isoelectric Point (pI)

20.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005172)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g07512 FvH4_6g02570
prunus_persica	Prupe.6G345800_v2.0.a1
pyrus_communis	pycom04g20040 pycom04g20050 pycom04g20060 pycom12g22310 pycom12g22320 pycom12g22330 pycom12g22340
rosa_chinensis	RchiOBHm_Chr3g0450471
rosa_laevigata	RLG00000025728 RLG00000025731
rosa_multiflora	Rmu_co8255291.1_g000001 Rmu_sc0000330.1_g000012 Rmu_sc0005951.1_g000003 Rmu_sc0005951.1_g000005
rosa_roxburghii	Rroxscaffold_6G00428140 Rroxscaffold_6G00428160
rosa_rugosa	Rorug02G0627900 Rorug02G0628000
rosa_samantha	Rh3AG028300 Rh3AG028600 Rh3BG028800 Rh3BG029100 Rh3CG027600 Rh3CG027900 Rh3DG028700 Rh3DG028800
rosa_wichuraiana	Rw3G002190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	507
AccIII	TCCGGA	2 cut(s)	197, 434
AciI	CCGC	1 cut(s)	376
AclWI	GGATC	1 cut(s)	109
AcsI	RAATTY	2 cut(s)	151, 383
AcuI	CTGAAG	2 cut(s)	118, 225
AgsI	TTSAA	2 cut(s)	21, 158
AhlI	ACTAGT	1 cut(s)	49
AjnI	CCWGG	1 cut(s)	334
AluBI	AGCT	4 cut(s)	138, 203, 209, 398
AluI	AGCT	4 cut(s)	138, 203, 209, 398
Alw26I	GTCTC	1 cut(s)	146
AlwI	GGATC	1 cut(s)	109
Aor13HI	TCCGGA	2 cut(s)	197, 434
ApoI	RAATTY	2 cut(s)	151, 383
ArsI	GACNNNNNNTTYG	2 cut(s)	322, 354
Asp700I	GAANNNNTTC	1 cut(s)	131
AspLEI	GCGC	1 cut(s)	509
AspS9I	GGNCC	1 cut(s)	195
AvaII	GGWCC	1 cut(s)	195
BaeGI	GKGCMC	1 cut(s)	237
BbsI	GAAGAC	1 cut(s)	533
BccI	CCATC	3 cut(s)	174, 241, 467
BciT130I	CCWGG	1 cut(s)	336
BcoDI	GTCTC	1 cut(s)	146
BcuI	ACTAGT	1 cut(s)	49
BfaI	CTAG	3 cut(s)	42, 50, 185
BglII	AGATCT	1 cut(s)	129
Bme1390I	CCNGG	1 cut(s)	336
Bme18I	GGWCC	1 cut(s)	195
BmgT120I	GGNCC	1 cut(s)	195
BmiI	GGNNCC	1 cut(s)	196
BmrFI	CCNGG	1 cut(s)	336
BpiI	GAAGAC	1 cut(s)	533
BsaJI	CCNNGG	2 cut(s)	111, 237
BsaWI	WCCGGW	2 cut(s)	197, 434
BseAI	TCCGGA	2 cut(s)	197, 434
BseBI	CCWGG	1 cut(s)	336
BseDI	CCNNGG	2 cut(s)	111, 237
BseGI	GGATG	1 cut(s)	487
BseSI	GKGCMC	1 cut(s)	237
Bsh1236I	CGCG	1 cut(s)	507
BsiSI	CCGG	2 cut(s)	198, 435
BsmAI	GTCTC	1 cut(s)	146
Bsp1286I	GDGCHC	1 cut(s)	237
Bsp13I	TCCGGA	2 cut(s)	197, 434
Bsp143I	GATC	4 cut(s)	101, 129, 390, 442
BspACI	CCGC	1 cut(s)	376
BspEI	TCCGGA	2 cut(s)	197, 434
BspFNI	CGCG	1 cut(s)	507
BspHI	TCATGA	1 cut(s)	94
BspLI	GGNNCC	1 cut(s)	196
BspPI	GGATC	1 cut(s)	109
BssECI	CCNNGG	2 cut(s)	111, 237
BssMI	GATC	4 cut(s)	101, 129, 390, 442
BssT1I	CCWWGG	2 cut(s)	111, 237
Bst2UI	CCWGG	1 cut(s)	336
BstDEI	CTNAG	2 cut(s)	402, 510
BstF5I	GGATG	1 cut(s)	487
BstFNI	CGCG	1 cut(s)	507
BstHHI	GCGC	1 cut(s)	509
BstKTI	GATC	4 cut(s)	104, 132, 393, 445
BstMAI	GTCTC	1 cut(s)	146
BstMBI	GATC	4 cut(s)	101, 129, 390, 442
BstMWI	GCNNNNNNNGC	1 cut(s)	144
BstNI	CCWGG	1 cut(s)	336
BstSCI	CCNGG	1 cut(s)	334
BstSLI	GKGCMC	1 cut(s)	237
BstUI	CGCG	1 cut(s)	507
BstV2I	GAAGAC	1 cut(s)	533
BstX2I	RGATCY	1 cut(s)	129
BstYI	RGATCY	1 cut(s)	129
BtsCI	GGATG	1 cut(s)	487
CciI	TCATGA	1 cut(s)	94
CfoI	GCGC	1 cut(s)	509
Cfr13I	GGNCC	1 cut(s)	195
CsiI	ACCWGGT	1 cut(s)	334
CviAII	CATG	5 cut(s)	95, 170, 287, 301, 446
CviJI	RGCY	5 cut(s)	138, 188, 203, 209, 398
CviKI_1	RGCY	5 cut(s)	138, 188, 203, 209, 398
DdeI	CTNAG	2 cut(s)	402, 510
DpnI	GATC	4 cut(s)	103, 131, 392, 444
DpnII	GATC	4 cut(s)	101, 129, 390, 442
Eco130I	CCWWGG	2 cut(s)	111, 237
Eco47I	GGWCC	1 cut(s)	195
Eco57I	CTGAAG	2 cut(s)	118, 225
EcoRII	CCWGG	1 cut(s)	334
EcoT14I	CCWWGG	2 cut(s)	111, 237
ErhI	CCWWGG	2 cut(s)	111, 237
FaeI	CATG	5 cut(s)	98, 173, 290, 304, 449
FaiI	YATR	9 cut(s)	77, 96, 119, 171, 224, 270, 288, 302, 447
FatI	CATG	5 cut(s)	94, 169, 286, 300, 445
FokI	GGATG	1 cut(s)	494
FspBI	CTAG	3 cut(s)	42, 50, 185
GlaI	GCGC	1 cut(s)	508
HapII	CCGG	2 cut(s)	198, 435
HhaI	GCGC	1 cut(s)	509
Hin1II	CATG	5 cut(s)	98, 173, 290, 304, 449
Hin6I	GCGC	1 cut(s)	507
HinP1I	GCGC	1 cut(s)	507
HinfI	GANTC	1 cut(s)	305
HpaII	CCGG	2 cut(s)	198, 435
Hpy188I	TCNGA	3 cut(s)	364, 395, 493
Hpy188III	TCNNGA	3 cut(s)	95, 198, 435
HpyAV	CCTTC	2 cut(s)	418, 457
HpyCH4V	TGCA	1 cut(s)	173
HpyF10VI	GCNNNNNNNGC	1 cut(s)	144
HpyF3I	CTNAG	2 cut(s)	402, 510
Hsp92II	CATG	5 cut(s)	98, 173, 290, 304, 449
HspAI	GCGC	1 cut(s)	507
Kpn2I	TCCGGA	2 cut(s)	197, 434
Kzo9I	GATC	4 cut(s)	101, 129, 390, 442
LmnI	GCTCC	1 cut(s)	200
LpnPI	CCDG	4 cut(s)	211, 321, 348, 448
MabI	ACCWGGT	1 cut(s)	334
MaeI	CTAG	3 cut(s)	42, 50, 185
MalI	GATC	4 cut(s)	103, 131, 392, 444
MboI	GATC	4 cut(s)	101, 129, 390, 442
MboII	GAAGA	5 cut(s)	124, 139, 452, 479, 538
MflI	RGATCY	1 cut(s)	129
MhlI	GDGCHC	1 cut(s)	237
MluCI	AATT	4 cut(s)	21, 151, 383, 568
MnlI	CCTC	4 cut(s)	16, 67, 310, 442
MroI	TCCGGA	2 cut(s)	197, 434
MroXI	GAANNNNTTC	1 cut(s)	131
MseI	TTAA	6 cut(s)	372, 387, 450, 501, 516, 564
MslI	CAYNNNNRTG	1 cut(s)	80
MspA1I	CMGCKG	1 cut(s)	138
MspI	CCGG	2 cut(s)	198, 435
MspR9I	CCNGG	1 cut(s)	336
MvaI	CCWGG	1 cut(s)	336
MvnI	CGCG	1 cut(s)	507
MwoI	GCNNNNNNNGC	1 cut(s)	144
NdeII	GATC	4 cut(s)	101, 129, 390, 442
NlaIII	CATG	5 cut(s)	98, 173, 290, 304, 449
NlaIV	GGNNCC	1 cut(s)	196
PagI	TCATGA	1 cut(s)	94
PdmI	GAANNNNTTC	1 cut(s)	131
PfeI	GAWTC	1 cut(s)	305
Psp6I	CCWGG	1 cut(s)	334
PspGI	CCWGG	1 cut(s)	334
PspN4I	GGNNCC	1 cut(s)	196
PspPI	GGNCC	1 cut(s)	195
PsuI	RGATCY	1 cut(s)	129
PvuII	CAGCTG	1 cut(s)	138
RseI	CAYNNNNRTG	1 cut(s)	80
SaqAI	TTAA	6 cut(s)	372, 387, 450, 501, 516, 564
Sau3AI	GATC	4 cut(s)	101, 129, 390, 442
Sau96I	GGNCC	1 cut(s)	195
ScrFI	CCNGG	1 cut(s)	336
SduI	GDGCHC	1 cut(s)	237
SetI	ASST	9 cut(s)	8, 140, 205, 211, 259, 321, 340, 400, 429
SexAI	ACCWGGT	1 cut(s)	334
SinI	GGWCC	1 cut(s)	195
SmiMI	CAYNNNNRTG	1 cut(s)	80
SpeI	ACTAGT	1 cut(s)	49
Sse9I	AATT	4 cut(s)	21, 151, 383, 568
SsiI	CCGC	1 cut(s)	376
SspMI	CTAG	3 cut(s)	42, 50, 185
StyD4I	CCNGG	1 cut(s)	334
StyI	CCWWGG	2 cut(s)	111, 237
TaqI	TCGA	1 cut(s)	253
TasI	AATT	4 cut(s)	21, 151, 383, 568
TfiI	GAWTC	1 cut(s)	305
Tru1I	TTAA	6 cut(s)	372, 387, 450, 501, 516, 564
Tru9I	TTAA	6 cut(s)	372, 387, 450, 501, 516, 564
TspDTI	ATGAA	1 cut(s)	566
TspGWI	ACGGA	1 cut(s)	114
VpaK11BI	GGWCC	1 cut(s)	195
XapI	RAATTY	2 cut(s)	151, 383
XcmI	CCANNNNNNNNNTGG	1 cut(s)	244
XmnI	GAANNNNTTC	1 cut(s)	131
XspI	CTAG	3 cut(s)	42, 50, 185

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.