Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0005172

Physical Location & Seq

Genomic Coordinates Forward (+)

47921291 .. 47922302

Gene Structure 1012 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000025728

Sequence Viewer

CDS Protein Promoter (2k)

Length: 585 bp

ATGACTATAAATATGACCTCTCTATCCCTTCCAATTTCTCTAACTCACATTCCTAGAGAACTAGTTGCCTCTTTTGTAATCTCTTACATATCAATGGAAAATGGTCATGACGGATCAAACTCCAAGGGTATGTGTGAGAAGATCTTCAGCTGTCTCTGCCCAAATTTTCAATCAAACCATCATGCACACCACAAACTAGCCAATGGGTCCGGAGCTGAAGCTGTGGCGAATGATATGGTACGAGTGCCCAAGGCAGAGATGGTTCGACCTACAAGGGTTTATGGGGAAAGACAACATCATGTTATTGTGAGCATGGATTCACAAGTTGAGGTAGATAAAAAGACACCAGGTTTGGATAAAAATGATACATTTTCTGAATACATTAATCGCACAAAATTTAAGATCAGAGCTTCCAAGTCCAATGTGGGAAAGGAGAAGGTTGCCTCCGGAGAAGATCATGTTTCCGAAAAAGAGAAGGAAGATGATGGTAAGGATGTATTTTCAGATTTTGTTAATCGCGCTAAGATTAAGATTAGGAAGACATCAAGTTTTGGAAGCAAAATGAATGTTTCCTTTAAGAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GIDE zf-C3HC4_3

Protein Analysis

195

Amino Acids

21.66

Weight (kDa)

9.07

Isoelectric Point (pI)

16.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005172)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g07512 FvH4_6g02570
prunus_persica	Prupe.6G345800_v2.0.a1
pyrus_communis	pycom04g20040 pycom04g20050 pycom04g20060 pycom12g22310 pycom12g22320 pycom12g22330 pycom12g22340
rosa_chinensis	RchiOBHm_Chr3g0450471
rosa_laevigata	RLG00000025728 RLG00000025731
rosa_multiflora	Rmu_co8255291.1_g000001 Rmu_sc0000330.1_g000012 Rmu_sc0005951.1_g000003 Rmu_sc0005951.1_g000005
rosa_roxburghii	Rroxscaffold_6G00428140 Rroxscaffold_6G00428160
rosa_rugosa	Rorug02G0627900 Rorug02G0628000
rosa_samantha	Rh3AG028300 Rh3AG028600 Rh3BG028800 Rh3BG029100 Rh3CG027600 Rh3CG027900 Rh3DG028700 Rh3DG028800
rosa_wichuraiana	Rw3G002190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	519
AccIII	TCCGGA	2 cut(s)	209, 446
AclWI	GGATC	1 cut(s)	121
AcsI	RAATTY	2 cut(s)	163, 395
AcuI	CTGAAG	2 cut(s)	130, 237
AfaI	GTAC	1 cut(s)	240
AgsI	TTSAA	1 cut(s)	170
AhlI	ACTAGT	1 cut(s)	61
AjnI	CCWGG	1 cut(s)	346
AluBI	AGCT	4 cut(s)	150, 215, 221, 410
AluI	AGCT	4 cut(s)	150, 215, 221, 410
Alw26I	GTCTC	1 cut(s)	158
AlwI	GGATC	1 cut(s)	121
Aor13HI	TCCGGA	2 cut(s)	209, 446
ApoI	RAATTY	2 cut(s)	163, 395
ArsI	GACNNNNNNTTYG	2 cut(s)	334, 366
AseI	ATTAAT	1 cut(s)	384
Asp700I	GAANNNNTTC	1 cut(s)	143
AspLEI	GCGC	1 cut(s)	521
AspS9I	GGNCC	1 cut(s)	207
AvaII	GGWCC	1 cut(s)	207
BaeGI	GKGCMC	1 cut(s)	249
BbsI	GAAGAC	1 cut(s)	545
BccI	CCATC	3 cut(s)	186, 253, 479
BciT130I	CCWGG	1 cut(s)	348
BcoDI	GTCTC	1 cut(s)	158
BcuI	ACTAGT	1 cut(s)	61
BfaI	CTAG	3 cut(s)	54, 62, 197
BglII	AGATCT	1 cut(s)	141
Bme1390I	CCNGG	1 cut(s)	348
Bme18I	GGWCC	1 cut(s)	207
BmgT120I	GGNCC	1 cut(s)	207
BmiI	GGNNCC	1 cut(s)	208
BmrFI	CCNGG	1 cut(s)	348
BpiI	GAAGAC	1 cut(s)	545
BsaJI	CCNNGG	2 cut(s)	123, 249
BsaWI	WCCGGW	2 cut(s)	209, 446
BseAI	TCCGGA	2 cut(s)	209, 446
BseBI	CCWGG	1 cut(s)	348
BseDI	CCNNGG	2 cut(s)	123, 249
BseGI	GGATG	1 cut(s)	499
BseSI	GKGCMC	1 cut(s)	249
Bsh1236I	CGCG	1 cut(s)	519
BsiSI	CCGG	2 cut(s)	210, 447
BsmAI	GTCTC	1 cut(s)	158
Bsp1286I	GDGCHC	1 cut(s)	249
Bsp13I	TCCGGA	2 cut(s)	209, 446
Bsp143I	GATC	4 cut(s)	113, 141, 402, 454
BspEI	TCCGGA	2 cut(s)	209, 446
BspFNI	CGCG	1 cut(s)	519
BspHI	TCATGA	1 cut(s)	106
BspLI	GGNNCC	1 cut(s)	208
BspPI	GGATC	1 cut(s)	121
BssECI	CCNNGG	2 cut(s)	123, 249
BssMI	GATC	4 cut(s)	113, 141, 402, 454
BssT1I	CCWWGG	2 cut(s)	123, 249
Bst2UI	CCWGG	1 cut(s)	348
BstDEI	CTNAG	1 cut(s)	522
BstF5I	GGATG	1 cut(s)	499
BstFNI	CGCG	1 cut(s)	519
BstHHI	GCGC	1 cut(s)	521
BstKTI	GATC	4 cut(s)	116, 144, 405, 457
BstMAI	GTCTC	1 cut(s)	158
BstMBI	GATC	4 cut(s)	113, 141, 402, 454
BstMWI	GCNNNNNNNGC	1 cut(s)	156
BstNI	CCWGG	1 cut(s)	348
BstSCI	CCNGG	1 cut(s)	346
BstSLI	GKGCMC	1 cut(s)	249
BstUI	CGCG	1 cut(s)	519
BstV2I	GAAGAC	1 cut(s)	545
BstX2I	RGATCY	1 cut(s)	141
BstYI	RGATCY	1 cut(s)	141
BtsCI	GGATG	1 cut(s)	499
CciI	TCATGA	1 cut(s)	106
CfoI	GCGC	1 cut(s)	521
Cfr13I	GGNCC	1 cut(s)	207
CsiI	ACCWGGT	1 cut(s)	346
Csp6I	GTAC	1 cut(s)	239
CviAII	CATG	5 cut(s)	107, 182, 299, 313, 458
CviJI	RGCY	5 cut(s)	150, 200, 215, 221, 410
CviKI_1	RGCY	5 cut(s)	150, 200, 215, 221, 410
CviQI	GTAC	1 cut(s)	239
DdeI	CTNAG	1 cut(s)	522
DpnI	GATC	4 cut(s)	115, 143, 404, 456
DpnII	GATC	4 cut(s)	113, 141, 402, 454
Eco130I	CCWWGG	2 cut(s)	123, 249
Eco47I	GGWCC	1 cut(s)	207
Eco57I	CTGAAG	2 cut(s)	130, 237
EcoRII	CCWGG	1 cut(s)	346
EcoT14I	CCWWGG	2 cut(s)	123, 249
ErhI	CCWWGG	2 cut(s)	123, 249
FaeI	CATG	5 cut(s)	110, 185, 302, 316, 461
FatI	CATG	5 cut(s)	106, 181, 298, 312, 457
FokI	GGATG	1 cut(s)	506
FspBI	CTAG	3 cut(s)	54, 62, 197
GlaI	GCGC	1 cut(s)	520
HapII	CCGG	2 cut(s)	210, 447
HhaI	GCGC	1 cut(s)	521
Hin1II	CATG	5 cut(s)	110, 185, 302, 316, 461
Hin6I	GCGC	1 cut(s)	519
HinP1I	GCGC	1 cut(s)	519
HinfI	GANTC	1 cut(s)	317
HpaII	CCGG	2 cut(s)	210, 447
Hpy188I	TCNGA	4 cut(s)	376, 407, 466, 505
Hpy188III	TCNNGA	3 cut(s)	107, 210, 447
HpyAV	CCTTC	3 cut(s)	38, 430, 469
HpyCH4V	TGCA	1 cut(s)	185
HpyF10VI	GCNNNNNNNGC	1 cut(s)	156
HpyF3I	CTNAG	1 cut(s)	522
Hsp92II	CATG	5 cut(s)	110, 185, 302, 316, 461
HspAI	GCGC	1 cut(s)	519
Kpn2I	TCCGGA	2 cut(s)	209, 446
Kzo9I	GATC	4 cut(s)	113, 141, 402, 454
LmnI	GCTCC	1 cut(s)	212
LpnPI	CCDG	4 cut(s)	223, 333, 360, 460
MabI	ACCWGGT	1 cut(s)	346
MaeI	CTAG	3 cut(s)	54, 62, 197
MalI	GATC	4 cut(s)	115, 143, 404, 456
MboI	GATC	4 cut(s)	113, 141, 402, 454
MboII	GAAGA	5 cut(s)	136, 151, 464, 491, 550
MflI	RGATCY	1 cut(s)	141
MhlI	GDGCHC	1 cut(s)	249
MluCI	AATT	4 cut(s)	33, 163, 395, 580
MnlI	CCTC	4 cut(s)	28, 79, 322, 454
MroI	TCCGGA	2 cut(s)	209, 446
MroXI	GAANNNNTTC	1 cut(s)	143
MseI	TTAA	5 cut(s)	384, 399, 513, 528, 576
MslI	CAYNNNNRTG	1 cut(s)	92
MspA1I	CMGCKG	1 cut(s)	150
MspI	CCGG	2 cut(s)	210, 447
MspR9I	CCNGG	1 cut(s)	348
MvaI	CCWGG	1 cut(s)	348
MvnI	CGCG	1 cut(s)	519
MwoI	GCNNNNNNNGC	1 cut(s)	156
NdeII	GATC	4 cut(s)	113, 141, 402, 454
NlaIII	CATG	5 cut(s)	110, 185, 302, 316, 461
NlaIV	GGNNCC	1 cut(s)	208
PagI	TCATGA	1 cut(s)	106
PdmI	GAANNNNTTC	1 cut(s)	143
PfeI	GAWTC	1 cut(s)	317
PshBI	ATTAAT	1 cut(s)	384
Psp6I	CCWGG	1 cut(s)	346
PspGI	CCWGG	1 cut(s)	346
PspN4I	GGNNCC	1 cut(s)	208
PspPI	GGNCC	1 cut(s)	207
PsuI	RGATCY	1 cut(s)	141
PvuII	CAGCTG	1 cut(s)	150
RsaI	GTAC	1 cut(s)	240
RsaNI	GTAC	1 cut(s)	239
RseI	CAYNNNNRTG	1 cut(s)	92
SaqAI	TTAA	5 cut(s)	384, 399, 513, 528, 576
Sau3AI	GATC	4 cut(s)	113, 141, 402, 454
Sau96I	GGNCC	1 cut(s)	207
ScrFI	CCNGG	1 cut(s)	348
SduI	GDGCHC	1 cut(s)	249
SetI	ASST	9 cut(s)	20, 152, 217, 223, 271, 333, 352, 412, 441
SexAI	ACCWGGT	1 cut(s)	346
SinI	GGWCC	1 cut(s)	207
SmiMI	CAYNNNNRTG	1 cut(s)	92
SpeI	ACTAGT	1 cut(s)	61
Sse9I	AATT	4 cut(s)	33, 163, 395, 580
SspMI	CTAG	3 cut(s)	54, 62, 197
StyD4I	CCNGG	1 cut(s)	346
StyI	CCWWGG	2 cut(s)	123, 249
TaqI	TCGA	1 cut(s)	265
TasI	AATT	4 cut(s)	33, 163, 395, 580
TfiI	GAWTC	1 cut(s)	317
Tru1I	TTAA	5 cut(s)	384, 399, 513, 528, 576
Tru9I	TTAA	5 cut(s)	384, 399, 513, 528, 576
TspDTI	ATGAA	1 cut(s)	578
TspGWI	ACGGA	1 cut(s)	126
VpaK11BI	GGWCC	1 cut(s)	207
VspI	ATTAAT	1 cut(s)	384
XapI	RAATTY	2 cut(s)	163, 395
XcmI	CCANNNNNNNNNTGG	2 cut(s)	256, 421
XmnI	GAANNNNTTC	1 cut(s)	143
XspI	CTAG	3 cut(s)	54, 62, 197

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.