Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0005172

Physical Location & Seq

Genomic Coordinates Forward (+)

21613496 .. 21613915

Gene Structure 420 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g20040.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 420 bp

ATGGGAAATCGTCAAGGAAAACCGCAAGCATACGAATTTCCGGCCTCTACTGCTCCAAAAGCTTCACTTCCGAGTCATGATCATACTCGCAATTCGAATAGTAACCAGGTCAAACTACCCAATGTGTCTGGAGCTGAAGCTGCACAGACTGGAATGGCACGAGTGCACAAGGTACAGATGAGAATGGAAGACAATGATGATACATTTTCTGACTTCATTAACCGCACAAAATTTAAGAACAGAGCTACAACCTCGAATGCTGGTATCAAGAAGGCTGCATCCGCAGCAGAAGGTGTTTATGAAACAAGGCAAGAAGATAATGCATATGATATGTTTACGGATTTTGTTAACCGCTCTAAGTCTAAGATTAGAAAGACGTTCAGCGTCAGAAGCAGAAGCAACACCTCCTTAAAGAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

140

Amino Acids

15.51

Weight (kDa)

10.09

Isoelectric Point (pI)

29.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0005172)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g07512 FvH4_6g02570
prunus_persica	Prupe.6G345800_v2.0.a1
pyrus_communis	pycom04g20040 pycom04g20050 pycom04g20060 pycom12g22310 pycom12g22320 pycom12g22330 pycom12g22340
rosa_chinensis	RchiOBHm_Chr3g0450471
rosa_laevigata	RLG00000025728 RLG00000025731
rosa_multiflora	Rmu_co8255291.1_g000001 Rmu_sc0000330.1_g000012 Rmu_sc0005951.1_g000003 Rmu_sc0005951.1_g000005
rosa_roxburghii	Rroxscaffold_6G00428140 Rroxscaffold_6G00428160
rosa_rugosa	Rorug02G0627900 Rorug02G0628000
rosa_samantha	Rh3AG028300 Rh3AG028600 Rh3BG028800 Rh3BG029100 Rh3CG027600 Rh3CG027900 Rh3DG028700 Rh3DG028800
rosa_wichuraiana	Rw3G002190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	354
AciI	CCGC	4 cut(s)	23, 223, 282, 352
AcsI	RAATTY	2 cut(s)	35, 230
AcuI	CTGAAG	1 cut(s)	156
AfaI	GTAC	1 cut(s)	174
AjnI	CCWGG	1 cut(s)	105
AluBI	AGCT	4 cut(s)	62, 134, 140, 245
AluI	AGCT	4 cut(s)	62, 134, 140, 245
Alw21I	GWGCWC	1 cut(s)	168
Alw44I	GTGCAC	1 cut(s)	164
AoxI	GGCC	1 cut(s)	42
ApaLI	GTGCAC	1 cut(s)	164
ApeKI	GCWGC	3 cut(s)	140, 275, 284
ApoI	RAATTY	2 cut(s)	35, 230
AsuII	TTCGAA	1 cut(s)	95
BaeGI	GKGCMC	1 cut(s)	168
BauI	CACGAG	1 cut(s)	159
BbsI	GAAGAC	1 cut(s)	195
Bbv12I	GWGCWC	1 cut(s)	168
BbvI	GCAGC	3 cut(s)	127, 262, 296
BciT130I	CCWGG	1 cut(s)	107
BclI	TGATCA	1 cut(s)	79
BisI	GCNGC	3 cut(s)	141, 276, 285
BlsI	GCNGC	3 cut(s)	142, 277, 286
Bme1390I	CCNGG	1 cut(s)	107
BmrFI	CCNGG	1 cut(s)	107
BmsI	GCATC	1 cut(s)	287
BpiI	GAAGAC	1 cut(s)	195
BpmI	CTGGAG	1 cut(s)	150
Bpu14I	TTCGAA	1 cut(s)	95
Bse1I	ACTGG	1 cut(s)	154
BseBI	CCWGG	1 cut(s)	107
BseGI	GGATG	1 cut(s)	278
BseNI	ACTGG	1 cut(s)	154
BseSI	GKGCMC	1 cut(s)	168
BseXI	GCAGC	3 cut(s)	127, 262, 296
BsgI	GTGCAG	1 cut(s)	126
BshFI	GGCC	1 cut(s)	44
BsiHKAI	GWGCWC	1 cut(s)	168
BsiSI	CCGG	1 cut(s)	41
BsmI	GAATGC	1 cut(s)	262
BsnI	GGCC	1 cut(s)	44
Bsp119I	TTCGAA	1 cut(s)	95
Bsp1286I	GDGCHC	1 cut(s)	168
Bsp143I	GATC	1 cut(s)	79
BspACI	CCGC	4 cut(s)	23, 223, 282, 352
BspANI	GGCC	1 cut(s)	44
BspHI	TCATGA	1 cut(s)	76
BspT104I	TTCGAA	1 cut(s)	95
BsrBI	CCGCTC	1 cut(s)	354
BsrI	ACTGG	1 cut(s)	154
BssMI	GATC	1 cut(s)	79
BssSI	CACGAG	1 cut(s)	159
Bst2BI	CACGAG	1 cut(s)	159
Bst2UI	CCWGG	1 cut(s)	107
BstBI	TTCGAA	1 cut(s)	95
BstC8I	GCNNGC	1 cut(s)	27
BstDEI	CTNAG	2 cut(s)	357, 363
BstF5I	GGATG	1 cut(s)	278
BstKTI	GATC	1 cut(s)	82
BstMBI	GATC	1 cut(s)	79
BstMWI	GCNNNNNNNGC	6 cut(s)	50, 59, 140, 281, 284, 390
BstNI	CCWGG	1 cut(s)	107
BstSCI	CCNGG	1 cut(s)	105
BstSLI	GKGCMC	1 cut(s)	168
BstV1I	GCAGC	3 cut(s)	127, 262, 296
BstV2I	GAAGAC	1 cut(s)	195
BsuRI	GGCC	1 cut(s)	44
BtsCI	GGATG	1 cut(s)	278
Cac8I	GCNNGC	1 cut(s)	27
CciI	TCATGA	1 cut(s)	76
CseI	GACGC	1 cut(s)	373
CsiI	ACCWGGT	1 cut(s)	105
Csp6I	GTAC	1 cut(s)	173
CviAII	CATG	1 cut(s)	77
CviJI	RGCY	6 cut(s)	44, 62, 134, 140, 245, 275
CviKI_1	RGCY	6 cut(s)	44, 62, 134, 140, 245, 275
CviQI	GTAC	1 cut(s)	173
DdeI	CTNAG	2 cut(s)	357, 363
DpnI	GATC	1 cut(s)	81
DpnII	GATC	1 cut(s)	79
Eco57I	CTGAAG	1 cut(s)	156
EcoRII	CCWGG	1 cut(s)	105
EcoT22I	ATGCAT	1 cut(s)	325
FaeI	CATG	1 cut(s)	80
FaiI	YATR	7 cut(s)	31, 78, 84, 300, 325, 327, 332
FalI	AAGNNNNNCTT	2 cut(s)	51, 83
FatI	CATG	1 cut(s)	76
FauNDI	CATATG	1 cut(s)	325
FbaI	TGATCA	1 cut(s)	79
Fnu4HI	GCNGC	3 cut(s)	141, 276, 285
FokI	GGATG	1 cut(s)	265
Fsp4HI	GCNGC	3 cut(s)	141, 276, 285
GluI	GCNGC	3 cut(s)	141, 276, 285
GsuI	CTGGAG	1 cut(s)	150
HaeIII	GGCC	1 cut(s)	44
HapII	CCGG	1 cut(s)	41
HgaI	GACGC	1 cut(s)	373
Hin1II	CATG	1 cut(s)	80
HincII	GTYRAC	1 cut(s)	349
HindII	GTYRAC	1 cut(s)	349
HindIII	AAGCTT	1 cut(s)	60
HinfI	GANTC	1 cut(s)	73
HpaI	GTTAAC	1 cut(s)	349
HpaII	CCGG	1 cut(s)	41
Hpy166II	GTNNAC	3 cut(s)	166, 336, 349
Hpy188I	TCNGA	3 cut(s)	72, 211, 389
Hpy188III	TCNNGA	3 cut(s)	77, 129, 268
Hpy8I	GTNNAC	3 cut(s)	166, 336, 349
HpyAV	CCTTC	2 cut(s)	265, 284
HpyCH4IV	ACGT	1 cut(s)	377
HpyCH4V	TGCA	4 cut(s)	143, 166, 278, 323
HpyF10VI	GCNNNNNNNGC	6 cut(s)	50, 59, 140, 281, 284, 390
HpyF3I	CTNAG	2 cut(s)	357, 363
HpySE526I	ACGT	1 cut(s)	377
Hsp92II	CATG	1 cut(s)	80
Ksp22I	TGATCA	1 cut(s)	79
KspAI	GTTAAC	1 cut(s)	349
Kzo9I	GATC	1 cut(s)	79
LmnI	GCTCC	2 cut(s)	58, 131
LpnPI	CCDG	6 cut(s)	54, 92, 114, 119, 135, 246
Lsp1109I	GCAGC	3 cut(s)	127, 262, 296
LweI	GCATC	1 cut(s)	287
MabI	ACCWGGT	1 cut(s)	105
MaeII	ACGT	1 cut(s)	377
MaeIII	GTNAC	1 cut(s)	101
MalI	GATC	1 cut(s)	81
MbiI	CCGCTC	1 cut(s)	354
MboI	GATC	1 cut(s)	79
MboII	GAAGA	2 cut(s)	200, 326
MhlI	GDGCHC	1 cut(s)	168
MluCI	AATT	3 cut(s)	35, 91, 230
MlyI	GAGTC	1 cut(s)	82
MnlI	CCTC	3 cut(s)	55, 262, 415
Mph1103I	ATGCAT	1 cut(s)	325
MseI	TTAA	4 cut(s)	219, 234, 348, 410
MspI	CCGG	1 cut(s)	41
MspR9I	CCNGG	1 cut(s)	107
Mva1269I	GAATGC	1 cut(s)	262
MvaI	CCWGG	1 cut(s)	107
MwoI	GCNNNNNNNGC	6 cut(s)	50, 59, 140, 281, 284, 390
NdeI	CATATG	1 cut(s)	325
NdeII	GATC	1 cut(s)	79
NlaIII	CATG	1 cut(s)	80
NsiI	ATGCAT	1 cut(s)	325
NspV	TTCGAA	1 cut(s)	95
PagI	TCATGA	1 cut(s)	76
PctI	GAATGC	1 cut(s)	262
PkrI	GCNGC	3 cut(s)	142, 277, 286
PleI	GAGTC	1 cut(s)	81
PpsI	GAGTC	1 cut(s)	81
Psp6I	CCWGG	1 cut(s)	105
PspGI	CCWGG	1 cut(s)	105
RsaI	GTAC	1 cut(s)	174
RsaNI	GTAC	1 cut(s)	173
SaqAI	TTAA	4 cut(s)	219, 234, 348, 410
SatI	GCNGC	3 cut(s)	141, 276, 285
Sau3AI	GATC	1 cut(s)	79
SchI	GAGTC	1 cut(s)	82
ScrFI	CCNGG	1 cut(s)	107
SduI	GDGCHC	1 cut(s)	168
SexAI	ACCWGGT	1 cut(s)	105
SfaNI	GCATC	1 cut(s)	287
SfuI	TTCGAA	1 cut(s)	95
Sse9I	AATT	3 cut(s)	35, 91, 230
SsiI	CCGC	4 cut(s)	23, 223, 282, 352
StyD4I	CCNGG	1 cut(s)	105
TaiI	ACGT	1 cut(s)	380
TaqI	TCGA	2 cut(s)	95, 254
TasI	AATT	3 cut(s)	35, 91, 230
Tru1I	TTAA	4 cut(s)	219, 234, 348, 410
Tru9I	TTAA	4 cut(s)	219, 234, 348, 410
TseI	GCWGC	3 cut(s)	140, 275, 284
TspDTI	ATGAA	2 cut(s)	205, 315
TspGWI	ACGGA	1 cut(s)	353
VneI	GTGCAC	1 cut(s)	164
XapI	RAATTY	2 cut(s)	35, 230
Zsp2I	ATGCAT	1 cut(s)	325

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.