Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0005172

Physical Location & Seq

Genomic Coordinates Reverse (-)

48639309 .. 48639806

Gene Structure 498 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00428140.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 498 bp

ATGAGGAGTGTGCATAGCTCAAACTCTAAGTGTGTGTGCAAGAAAATCTTCGGTATTTCTATTACCTGTCCAGTTTGTAAATTGGCACCAACTAGTCAGGTTTCGCTGCAAGAGAAACTCAAGCCTAAGGCAGAGATGACTACCCAAACCAAGGTTGCCGCTGAGCCGAGTAATGGCAGGGCCAATTTAAAAGTTGACGAGAAGCAAAAGCGGCCCAAATTAGAGGCAAAACTTACAAAAGGAGGTAGGACAGCAAGCCTGCAGGGTTACAATGATGCATTTTCTGACTACATTACTCGTGCAAAAATTAGGATCAGAGCTATGTCAAGTGTTGGCATTGAAAAGATTGCCTCTGGATCCGCAGATGATGTGCATGATACGAAGAAAGAAGATAGCACCAAAGATACATTTTCAGTTTATATCAATCGTGCTAAGATGAAGATCAGAAAAACGTCGAGTATTGGAAGCAGAAAGATCATCTCCTTCACACGAGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

165

Amino Acids

18.22

Weight (kDa)

10.02

Isoelectric Point (pI)

28.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0005172)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g07512 FvH4_6g02570
prunus_persica	Prupe.6G345800_v2.0.a1
pyrus_communis	pycom04g20040 pycom04g20050 pycom04g20060 pycom12g22310 pycom12g22320 pycom12g22330 pycom12g22340
rosa_chinensis	RchiOBHm_Chr3g0450471
rosa_laevigata	RLG00000025728 RLG00000025731
rosa_multiflora	Rmu_co8255291.1_g000001 Rmu_sc0000330.1_g000012 Rmu_sc0005951.1_g000003 Rmu_sc0005951.1_g000005
rosa_roxburghii	Rroxscaffold_6G00428140 Rroxscaffold_6G00428160
rosa_rugosa	Rorug02G0627900 Rorug02G0628000
rosa_samantha	Rh3AG028300 Rh3AG028600 Rh3BG028800 Rh3BG029100 Rh3CG027600 Rh3CG027900 Rh3DG028700 Rh3DG028800
rosa_wichuraiana	Rw3G002190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	85
AciI	CCGC	3 cut(s)	159, 211, 360
AclWI	GGATC	3 cut(s)	320, 351, 364
AfiI	CCNNNNNNNGG	2 cut(s)	151, 173
AgsI	TTSAA	1 cut(s)	341
AhlI	ACTAGT	1 cut(s)	92
AluBI	AGCT	2 cut(s)	18, 320
AluI	AGCT	2 cut(s)	18, 320
AlwI	GGATC	3 cut(s)	320, 351, 364
AoxI	GGCC	2 cut(s)	180, 212
ApeKI	GCWGC	1 cut(s)	106
Asp700I	GAANNNNTTC	1 cut(s)	47
AspS9I	GGNCC	2 cut(s)	180, 213
AxyI	CCTNAGG	1 cut(s)	126
BamHI	GGATCC	1 cut(s)	356
BanI	GGYRCC	1 cut(s)	85
BauI	CACGAG	2 cut(s)	297, 489
BbvI	GCAGC	1 cut(s)	93
BcuI	ACTAGT	1 cut(s)	92
BfaI	CTAG	1 cut(s)	93
BfmI	CTRYAG	1 cut(s)	260
BisI	GCNGC	3 cut(s)	107, 159, 212
BlpI	GCTNAGC	1 cut(s)	162
BlsI	GCNGC	3 cut(s)	108, 160, 213
BmgT120I	GGNCC	2 cut(s)	180, 213
BmiI	GGNNCC	2 cut(s)	87, 358
BmsI	GCATC	1 cut(s)	265
Bpu1102I	GCTNAGC	1 cut(s)	162
BpuEI	CTTGAG	1 cut(s)	104
BsaBI	GATNNNNATC	1 cut(s)	440
BsaJI	CCNNGG	1 cut(s)	150
Bsc4I	CCNNNNNNNGG	2 cut(s)	151, 173
Bse1I	ACTGG	1 cut(s)	71
Bse21I	CCTNAGG	1 cut(s)	126
Bse8I	GATNNNNATC	1 cut(s)	440
BseDI	CCNNGG	1 cut(s)	150
BseJI	GATNNNNATC	1 cut(s)	440
BseLI	CCNNNNNNNGG	2 cut(s)	151, 173
BseMII	CTCAG	1 cut(s)	153
BseNI	ACTGG	1 cut(s)	71
BseRI	GAGGAG	1 cut(s)	19
BseXI	GCAGC	1 cut(s)	93
BshFI	GGCC	2 cut(s)	182, 214
BshNI	GGYRCC	1 cut(s)	85
BslI	CCNNNNNNNGG	2 cut(s)	151, 173
BsnI	GGCC	2 cut(s)	182, 214
Bsp143I	GATC	4 cut(s)	312, 356, 441, 474
Bsp1720I	GCTNAGC	1 cut(s)	162
BspACI	CCGC	3 cut(s)	159, 211, 360
BspANI	GGCC	2 cut(s)	182, 214
BspCNI	CTCAG	1 cut(s)	154
BspLI	GGNNCC	2 cut(s)	87, 358
BspMAI	CTGCAG	1 cut(s)	264
BspPI	GGATC	3 cut(s)	320, 351, 364
BspT107I	GGYRCC	1 cut(s)	85
BsrI	ACTGG	1 cut(s)	71
BssECI	CCNNGG	1 cut(s)	150
BssMI	GATC	4 cut(s)	312, 356, 441, 474
BssSI	CACGAG	2 cut(s)	297, 489
BssT1I	CCWWGG	1 cut(s)	150
Bst2BI	CACGAG	2 cut(s)	297, 489
BstC8I	GCNNGC	2 cut(s)	256, 260
BstDEI	CTNAG	4 cut(s)	27, 126, 162, 432
BstKTI	GATC	4 cut(s)	315, 359, 444, 477
BstMBI	GATC	4 cut(s)	312, 356, 441, 474
BstMWI	GCNNNNNNNGC	1 cut(s)	211
BstSFI	CTRYAG	1 cut(s)	260
BstV1I	GCAGC	1 cut(s)	93
BstX2I	RGATCY	1 cut(s)	356
BstYI	RGATCY	1 cut(s)	356
Bsu36I	CCTNAGG	1 cut(s)	126
BsuRI	GGCC	2 cut(s)	182, 214
Cac8I	GCNNGC	2 cut(s)	256, 260
Cfr13I	GGNCC	2 cut(s)	180, 213
CviAII	CATG	1 cut(s)	374
CviJI	RGCY	7 cut(s)	18, 124, 166, 182, 214, 258, 320
CviKI_1	RGCY	7 cut(s)	18, 124, 166, 182, 214, 258, 320
DdeI	CTNAG	4 cut(s)	27, 126, 162, 432
DpnI	GATC	4 cut(s)	314, 358, 443, 476
DpnII	GATC	4 cut(s)	312, 356, 441, 474
DraI	TTTAAA	1 cut(s)	189
Eco130I	CCWWGG	1 cut(s)	150
Eco81I	CCTNAGG	1 cut(s)	126
EcoT14I	CCWWGG	1 cut(s)	150
EcoT22I	ATGCAT	1 cut(s)	280
ErhI	CCWWGG	1 cut(s)	150
FaeI	CATG	1 cut(s)	377
FaiI	YATR	4 cut(s)	15, 323, 375, 420
FalI	AAGNNNNNCTT	2 cut(s)	32, 64
FatI	CATG	1 cut(s)	373
Fnu4HI	GCNGC	3 cut(s)	107, 159, 212
Fsp4HI	GCNGC	3 cut(s)	107, 159, 212
FspBI	CTAG	1 cut(s)	93
GluI	GCNGC	3 cut(s)	107, 159, 212
HaeIII	GGCC	2 cut(s)	182, 214
Hin1II	CATG	1 cut(s)	377
HincII	GTYRAC	1 cut(s)	196
HindII	GTYRAC	1 cut(s)	196
Hpy166II	GTNNAC	1 cut(s)	196
Hpy188I	TCNGA	3 cut(s)	286, 317, 446
Hpy188III	TCNNGA	1 cut(s)	354
Hpy8I	GTNNAC	1 cut(s)	196
Hpy99I	CGWCG	1 cut(s)	457
HpyAV	CCTTC	1 cut(s)	493
HpyCH4IV	ACGT	1 cut(s)	452
HpyCH4V	TGCA	7 cut(s)	13, 39, 109, 262, 278, 302, 373
HpyF10VI	GCNNNNNNNGC	1 cut(s)	211
HpyF3I	CTNAG	4 cut(s)	27, 126, 162, 432
HpySE526I	ACGT	1 cut(s)	452
Hsp92II	CATG	1 cut(s)	377
Kzo9I	GATC	4 cut(s)	312, 356, 441, 474
LpnPI	CCDG	7 cut(s)	79, 83, 84, 163, 248, 272, 339
Lsp1109I	GCAGC	1 cut(s)	93
LweI	GCATC	1 cut(s)	265
MaeI	CTAG	1 cut(s)	93
MaeII	ACGT	1 cut(s)	452
MaeIII	GTNAC	1 cut(s)	266
MalI	GATC	4 cut(s)	314, 358, 443, 476
MboI	GATC	4 cut(s)	312, 356, 441, 474
MboII	GAAGA	4 cut(s)	40, 394, 401, 451
MflI	RGATCY	1 cut(s)	356
MluCI	AATT	4 cut(s)	80, 184, 218, 306
MnlI	CCTC	3 cut(s)	217, 236, 361
Mph1103I	ATGCAT	1 cut(s)	280
MroXI	GAANNNNTTC	1 cut(s)	47
MseI	TTAA	1 cut(s)	188
MspA1I	CMGCKG	1 cut(s)	161
MwoI	GCNNNNNNNGC	1 cut(s)	211
NdeII	GATC	4 cut(s)	312, 356, 441, 474
NlaIII	CATG	1 cut(s)	377
NlaIV	GGNNCC	2 cut(s)	87, 358
NmeAIII	GCCGAG	1 cut(s)	192
NsiI	ATGCAT	1 cut(s)	280
PdmI	GAANNNNTTC	1 cut(s)	47
PkrI	GCNGC	3 cut(s)	108, 160, 213
PspN4I	GGNNCC	2 cut(s)	87, 358
PspPI	GGNCC	2 cut(s)	180, 213
PstI	CTGCAG	1 cut(s)	264
PsuI	RGATCY	1 cut(s)	356
SaqAI	TTAA	1 cut(s)	188
SatI	GCNGC	3 cut(s)	107, 159, 212
Sau3AI	GATC	4 cut(s)	312, 356, 441, 474
Sau96I	GGNCC	2 cut(s)	180, 213
SbfI	CCTGCAGG	1 cut(s)	264
SdaI	CCTGCAGG	1 cut(s)	264
SetI	ASST	7 cut(s)	20, 68, 102, 156, 247, 322, 455
SfaNI	GCATC	1 cut(s)	265
SfcI	CTRYAG	1 cut(s)	260
SmlI	CTYRAG	1 cut(s)	119
SmoI	CTYRAG	1 cut(s)	119
SpeI	ACTAGT	1 cut(s)	92
Sse8387I	CCTGCAGG	1 cut(s)	264
Sse9I	AATT	4 cut(s)	80, 184, 218, 306
SsiI	CCGC	3 cut(s)	159, 211, 360
SspMI	CTAG	1 cut(s)	93
StyI	CCWWGG	1 cut(s)	150
TaiI	ACGT	1 cut(s)	455
TaqI	TCGA	1 cut(s)	455
TasI	AATT	4 cut(s)	80, 184, 218, 306
TauI	GCSGC	2 cut(s)	161, 214
Tru1I	TTAA	1 cut(s)	188
Tru9I	TTAA	1 cut(s)	188
TseI	GCWGC	1 cut(s)	106
TspDTI	ATGAA	1 cut(s)	452
XmnI	GAANNNNTTC	1 cut(s)	47
XspI	CTAG	1 cut(s)	93
Zsp2I	ATGCAT	1 cut(s)	280

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.