Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0005172

Physical Location & Seq

Genomic Coordinates Forward (+)

21617905 .. 21618402

Gene Structure 498 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g20050.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 498 bp

ATGGGAAATAGACAGAGTCAAGATGGATCCAACTCCAAGAGTGTTTGTGAGAAGATCTTCAGCTCTCTCTGCTCAAATTTTCAGACAAACCAGCACGCACACCACAAACAATATGCAGTTCCGGCCTCTTCTGCTCCAAACACTTCACTGCCAACTCATGACCATACTAGCTTTTCGAATAGTATCCAGATCAAACTGACCAATTCGTCTGGAGCTGAAGCTGCGTCAACTGGACTGGCACGAATGTCCAAGGCAGATATGAGAATGGAAGACAATGATGCATTTTCTGACTACATTAACCGCACAAAATTTAAGATCAAAGCTATGTCCTCCAATGTCAGCATTGAGAGGGTTGCCTCCATAGCAGATGATGCTTATGAAACAAAGCAAGAAGATGATGAAGGAGACATGTTTATGGATTTTATTAAGCGCACTAAGTTTAAGATTAGAAAGACATCCAGCATTGGAAGCAGAATGAACATCTCCTTTAAAAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

166

Amino Acids

18.38

Weight (kDa)

9.08

Isoelectric Point (pI)

34.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005172)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g07512 FvH4_6g02570
prunus_persica	Prupe.6G345800_v2.0.a1
pyrus_communis	pycom04g20040 pycom04g20050 pycom04g20060 pycom12g22310 pycom12g22320 pycom12g22330 pycom12g22340
rosa_chinensis	RchiOBHm_Chr3g0450471
rosa_laevigata	RLG00000025728 RLG00000025731
rosa_multiflora	Rmu_co8255291.1_g000001 Rmu_sc0000330.1_g000012 Rmu_sc0005951.1_g000003 Rmu_sc0005951.1_g000005
rosa_roxburghii	Rroxscaffold_6G00428140 Rroxscaffold_6G00428160
rosa_rugosa	Rorug02G0627900 Rorug02G0628000
rosa_samantha	Rh3AG028300 Rh3AG028600 Rh3BG028800 Rh3BG029100 Rh3CG027600 Rh3CG027900 Rh3DG028700 Rh3DG028800
rosa_wichuraiana	Rw3G002190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	205
AciI	CCGC	1 cut(s)	301
AclWI	GGATC	2 cut(s)	21, 34
AcsI	RAATTY	2 cut(s)	76, 308
AcuI	CTGAAG	2 cut(s)	43, 237
AflIII	ACRYGT	1 cut(s)	408
AluBI	AGCT	5 cut(s)	63, 171, 215, 221, 323
AluI	AGCT	5 cut(s)	63, 171, 215, 221, 323
Alw26I	GTCTC	1 cut(s)	399
AlwI	GGATC	2 cut(s)	21, 34
AoxI	GGCC	1 cut(s)	123
ApeKI	GCWGC	1 cut(s)	221
ApoI	RAATTY	2 cut(s)	76, 308
Asp700I	GAANNNNTTC	1 cut(s)	56
AspLEI	GCGC	1 cut(s)	432
AsuII	TTCGAA	1 cut(s)	176
BamHI	GGATCC	1 cut(s)	26
BbsI	GAAGAC	1 cut(s)	276
BbvI	GCAGC	1 cut(s)	208
BccI	CCATC	1 cut(s)	17
BciVI	GTATCC	1 cut(s)	194
BcoDI	GTCTC	1 cut(s)	399
BfaI	CTAG	1 cut(s)	168
BfuI	GTATCC	1 cut(s)	194
BglII	AGATCT	1 cut(s)	54
BisI	GCNGC	1 cut(s)	222
BlsI	GCNGC	1 cut(s)	223
BmiI	GGNNCC	1 cut(s)	28
BmsI	GCATC	2 cut(s)	268, 361
BpiI	GAAGAC	1 cut(s)	276
BpmI	CTGGAG	1 cut(s)	231
Bpu14I	TTCGAA	1 cut(s)	176
BsaJI	CCNNGG	1 cut(s)	249
Bse1I	ACTGG	2 cut(s)	235, 240
BseDI	CCNNGG	1 cut(s)	249
BseGI	GGATG	1 cut(s)	455
BseNI	ACTGG	2 cut(s)	235, 240
BseXI	GCAGC	1 cut(s)	208
BshFI	GGCC	1 cut(s)	125
BsiSI	CCGG	1 cut(s)	122
BsmAI	GTCTC	1 cut(s)	399
BsnI	GGCC	1 cut(s)	125
Bsp119I	TTCGAA	1 cut(s)	176
Bsp143I	GATC	4 cut(s)	26, 54, 189, 315
BspACI	CCGC	1 cut(s)	301
BspANI	GGCC	1 cut(s)	125
BspHI	TCATGA	1 cut(s)	157
BspLI	GGNNCC	1 cut(s)	28
BspPI	GGATC	2 cut(s)	21, 34
BspT104I	TTCGAA	1 cut(s)	176
BsrI	ACTGG	2 cut(s)	235, 240
BssECI	CCNNGG	1 cut(s)	249
BssMI	GATC	4 cut(s)	26, 54, 189, 315
BssT1I	CCWWGG	1 cut(s)	249
Bst6I	CTCTTC	1 cut(s)	133
BstAPI	GCANNNNNTGC	1 cut(s)	371
BstBI	TTCGAA	1 cut(s)	176
BstC8I	GCNNGC	1 cut(s)	96
BstDEI	CTNAG	1 cut(s)	435
BstF5I	GGATG	1 cut(s)	455
BstHHI	GCGC	1 cut(s)	432
BstKTI	GATC	4 cut(s)	29, 57, 192, 318
BstMAI	GTCTC	1 cut(s)	399
BstMBI	GATC	4 cut(s)	26, 54, 189, 315
BstMWI	GCNNNNNNNGC	7 cut(s)	69, 122, 131, 221, 362, 371, 468
BstNSI	RCATGY	1 cut(s)	412
BstV1I	GCAGC	1 cut(s)	208
BstV2I	GAAGAC	1 cut(s)	276
BstX2I	RGATCY	2 cut(s)	26, 54
BstYI	RGATCY	2 cut(s)	26, 54
BsuI	GTATCC	1 cut(s)	194
BsuRI	GGCC	1 cut(s)	125
BtsCI	GGATG	1 cut(s)	455
BtsI	GCAGTG	1 cut(s)	146
BtsIMutI	CAGTG	1 cut(s)	146
Cac8I	GCNNGC	1 cut(s)	96
CciI	TCATGA	1 cut(s)	157
CfoI	GCGC	1 cut(s)	432
CseI	GACGC	1 cut(s)	213
CviAII	CATG	2 cut(s)	158, 409
CviJI	RGCY	6 cut(s)	63, 125, 171, 215, 221, 323
CviKI_1	RGCY	6 cut(s)	63, 125, 171, 215, 221, 323
DdeI	CTNAG	1 cut(s)	435
DpnI	GATC	4 cut(s)	28, 56, 191, 317
DpnII	GATC	4 cut(s)	26, 54, 189, 315
DraI	TTTAAA	1 cut(s)	490
DrdI	GACNNNNNNGTC	1 cut(s)	205
DseDI	GACNNNNNNGTC	1 cut(s)	205
Eam1104I	CTCTTC	1 cut(s)	133
EarI	CTCTTC	1 cut(s)	133
Eco130I	CCWWGG	1 cut(s)	249
Eco57I	CTGAAG	2 cut(s)	43, 237
EcoT14I	CCWWGG	1 cut(s)	249
EcoT22I	ATGCAT	1 cut(s)	283
ErhI	CCWWGG	1 cut(s)	249
FaeI	CATG	2 cut(s)	161, 412
FaiI	YATR	9 cut(s)	114, 159, 165, 260, 326, 362, 378, 410, 416
FatI	CATG	2 cut(s)	157, 408
Fnu4HI	GCNGC	1 cut(s)	222
FokI	GGATG	1 cut(s)	442
Fsp4HI	GCNGC	1 cut(s)	222
FspBI	CTAG	1 cut(s)	168
GlaI	GCGC	1 cut(s)	431
GluI	GCNGC	1 cut(s)	222
GsuI	CTGGAG	1 cut(s)	231
HaeIII	GGCC	1 cut(s)	125
HapII	CCGG	1 cut(s)	122
HgaI	GACGC	1 cut(s)	213
HhaI	GCGC	1 cut(s)	432
Hin1II	CATG	2 cut(s)	161, 412
Hin6I	GCGC	1 cut(s)	430
HinP1I	GCGC	1 cut(s)	430
HincII	GTYRAC	1 cut(s)	228
HindII	GTYRAC	1 cut(s)	228
HinfI	GANTC	1 cut(s)	16
HpaII	CCGG	1 cut(s)	122
Hpy166II	GTNNAC	1 cut(s)	228
Hpy188I	TCNGA	2 cut(s)	84, 289
Hpy188III	TCNNGA	4 cut(s)	20, 158, 187, 210
Hpy8I	GTNNAC	1 cut(s)	228
HpyAV	CCTTC	1 cut(s)	395
HpyCH4V	TGCA	2 cut(s)	116, 281
HpyF10VI	GCNNNNNNNGC	7 cut(s)	69, 122, 131, 221, 362, 371, 468
HpyF3I	CTNAG	1 cut(s)	435
Hsp92II	CATG	2 cut(s)	161, 412
HspAI	GCGC	1 cut(s)	430
Kzo9I	GATC	4 cut(s)	26, 54, 189, 315
LmnI	GCTCC	2 cut(s)	139, 212
LpnPI	CCDG	7 cut(s)	104, 135, 195, 200, 216, 221, 472
Lsp1109I	GCAGC	1 cut(s)	208
LweI	GCATC	2 cut(s)	268, 361
MaeI	CTAG	1 cut(s)	168
MalI	GATC	4 cut(s)	28, 56, 191, 317
MboI	GATC	4 cut(s)	26, 54, 189, 315
MboII	GAAGA	5 cut(s)	49, 64, 120, 281, 404
MflI	RGATCY	2 cut(s)	26, 54
MluCI	AATT	3 cut(s)	76, 202, 308
MlyI	GAGTC	1 cut(s)	25
MmeI	TCCRAC	1 cut(s)	54
MnlI	CCTC	4 cut(s)	136, 340, 342, 367
Mph1103I	ATGCAT	1 cut(s)	283
MroXI	GAANNNNTTC	1 cut(s)	56
MseI	TTAA	5 cut(s)	297, 312, 426, 441, 489
MslI	CAYNNNNRTG	1 cut(s)	413
MspI	CCGG	1 cut(s)	122
MwoI	GCNNNNNNNGC	7 cut(s)	69, 122, 131, 221, 362, 371, 468
NdeII	GATC	4 cut(s)	26, 54, 189, 315
NlaIII	CATG	2 cut(s)	161, 412
NlaIV	GGNNCC	1 cut(s)	28
NsiI	ATGCAT	1 cut(s)	283
NspI	RCATGY	1 cut(s)	412
NspV	TTCGAA	1 cut(s)	176
PagI	TCATGA	1 cut(s)	157
PciI	ACATGT	1 cut(s)	408
PdmI	GAANNNNTTC	1 cut(s)	56
PflFI	GACNNNGTC	1 cut(s)	15
PkrI	GCNGC	1 cut(s)	223
PleI	GAGTC	1 cut(s)	24
PpsI	GAGTC	1 cut(s)	24
PscI	ACATGT	1 cut(s)	408
PspN4I	GGNNCC	1 cut(s)	28
PsuI	RGATCY	2 cut(s)	26, 54
PsyI	GACNNNGTC	1 cut(s)	15
RseI	CAYNNNNRTG	1 cut(s)	413
SaqAI	TTAA	5 cut(s)	297, 312, 426, 441, 489
SatI	GCNGC	1 cut(s)	222
Sau3AI	GATC	4 cut(s)	26, 54, 189, 315
SchI	GAGTC	1 cut(s)	25
SetI	ASST	5 cut(s)	65, 173, 217, 223, 325
SfaNI	GCATC	2 cut(s)	268, 361
SfuI	TTCGAA	1 cut(s)	176
SmiMI	CAYNNNNRTG	1 cut(s)	413
Sse9I	AATT	3 cut(s)	76, 202, 308
SsiI	CCGC	1 cut(s)	301
SspMI	CTAG	1 cut(s)	168
StyI	CCWWGG	1 cut(s)	249
TaqI	TCGA	1 cut(s)	176
TasI	AATT	3 cut(s)	76, 202, 308
Tru1I	TTAA	5 cut(s)	297, 312, 426, 441, 489
Tru9I	TTAA	5 cut(s)	297, 312, 426, 441, 489
TscAI	CASTG	1 cut(s)	153
TseI	GCWGC	1 cut(s)	221
TspDTI	ATGAA	3 cut(s)	393, 414, 491
TspRI	CASTG	1 cut(s)	153
Tth111I	GACNNNGTC	1 cut(s)	15
XapI	RAATTY	2 cut(s)	76, 308
XceI	RCATGY	1 cut(s)	412
XmnI	GAANNNNTTC	1 cut(s)	56
XspI	CTAG	1 cut(s)	168
Zsp2I	ATGCAT	1 cut(s)	283

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.