FvH4_6g03080

Transferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0004543
Physical Location & Seq
Reverse (-)
1729921 .. 1730501
581 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g03080.t1

Sequence Viewer

Length: 471 bp
ATGCAAATGCTAGTTGAGGAGTACGGCATTGGTGCTTTTGAGCAAGGCTTTCCAATTGATTCCGGAGCCGTGCACCGCCATATCTCGAGTCAGGGGGAGGAGGAGTTTTGGTCTGCTATAGACTGGTTTGAGTCCAGAAATGGAGAGGGAGGTGAGTCTAGGGTACCTTTTAGGATGTATGGCCCCGAGTTGACATGCATGAGCATGGAGAATATGACTGAGTTTCCTGGTAGTACTGGGAATACGCCGTTGATGCACACAGCTGTGTTTAATACGGAGAGGAGGCCCGTACACGTGTCGTATCATGTCGGAAATGTGGAAGGGGAAGGGTTGATAATGGTGATGCCATCTCCCGAAGGAGAGCTCGCGAGGATGGTTACGGTGACGTTGCCGGTGGAGGAACTAGAGCAGCTACGTGAGGATGAAGCTGTTCTGAGCCTAAACCCAATAAGTGGGACGAAACAAGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Transferase

Protein Analysis

157

Amino Acids

17.34

Weight (kDa)

4.51

Isoelectric Point (pI)

62.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 163
AccB1I GGYRCC 1 cut(s) 163
AccB7I CCANNNNNTGG 1 cut(s) 452
AccII CGCG 1 cut(s) 368
AccIII TCCGGA 1 cut(s) 62
AciI CCGC 1 cut(s) 76
AcvI CACGTG 1 cut(s) 295
AfaI GTAC 4 cut(s) 23, 165, 235, 291
AfiI CCNNNNNNNGG 1 cut(s) 452
AflIII ACRYGT 2 cut(s) 292, 294
AjnI CCWGG 1 cut(s) 226
AleI CACNNNNGTG 1 cut(s) 263
AluBI AGCT 4 cut(s) 263, 364, 412, 428
AluI AGCT 4 cut(s) 263, 364, 412, 428
Alw21I GWGCWC 2 cut(s) 75, 366
Alw44I GTGCAC 1 cut(s) 71
Ama87I CYCGRG 2 cut(s) 85, 185
Aor13HI TCCGGA 1 cut(s) 62
AoxI GGCC 2 cut(s) 181, 284
ApaLI GTGCAC 1 cut(s) 71
ApeKI GCWGC 1 cut(s) 409
Asp700I GAANNNNTTC 1 cut(s) 429
Asp718I GGTACC 1 cut(s) 163
AspS9I GGNCC 2 cut(s) 182, 285
AsuHPI GGTGA 3 cut(s) 164, 352, 394
AvaI CYCGRG 2 cut(s) 85, 185
BaeGI GKGCMC 1 cut(s) 75
BanI GGYRCC 1 cut(s) 163
BanII GRGCYC 1 cut(s) 366
BbrPI CACGTG 1 cut(s) 295
Bbv12I GWGCWC 2 cut(s) 75, 366
BbvI GCAGC 1 cut(s) 421
BccI CCATC 2 cut(s) 355, 367
BceAI ACGGC 3 cut(s) 40, 53, 232
BciT130I CCWGG 1 cut(s) 228
BfaI CTAG 3 cut(s) 11, 159, 404
BfmI CTRYAG 1 cut(s) 117
BisI GCNGC 1 cut(s) 410
BlsI GCNGC 1 cut(s) 411
BmcAI AGTACT 1 cut(s) 235
Bme1390I CCNGG 1 cut(s) 228
BmeT110I CYCGRG 2 cut(s) 85, 185
BmgT120I GGNCC 2 cut(s) 182, 285
BmiI GGNNCC 3 cut(s) 67, 165, 184
BmrFI CCNGG 1 cut(s) 228
BmrI ACTGGG 1 cut(s) 246
BmsI GCATC 2 cut(s) 243, 333
BmuI ACTGGG 1 cut(s) 246
BsaAI YACGTR 2 cut(s) 295, 416
BsaWI WCCGGW 1 cut(s) 62
BsaXI ACNNNNNCTCC 4 cut(s) 89, 95, 119, 125
Bsc4I CCNNNNNNNGG 1 cut(s) 452
Bse118I RCCGGY 1 cut(s) 391
Bse1I ACTGG 2 cut(s) 128, 241
BseAI TCCGGA 1 cut(s) 62
BseBI CCWGG 1 cut(s) 228
BseGI GGATG 3 cut(s) 180, 378, 427
BseLI CCNNNNNNNGG 1 cut(s) 452
BseMII CTCAG 2 cut(s) 210, 425
BseNI ACTGG 2 cut(s) 128, 241
BseRI GAGGAG 4 cut(s) 32, 113, 116, 295
BseSI GKGCMC 1 cut(s) 75
BseXI GCAGC 1 cut(s) 421
Bsh1236I CGCG 1 cut(s) 368
BshFI GGCC 2 cut(s) 183, 286
BshNI GGYRCC 1 cut(s) 163
BsiHKAI GWGCWC 2 cut(s) 75, 366
BsiHKCI CYCGRG 2 cut(s) 85, 185
BsiSI CCGG 2 cut(s) 63, 392
BslI CCNNNNNNNGG 1 cut(s) 452
BsnI GGCC 2 cut(s) 183, 286
BsoBI CYCGRG 2 cut(s) 85, 185
Bsp1286I GDGCHC 2 cut(s) 75, 366
Bsp13I TCCGGA 1 cut(s) 62
Bsp68I TCGCGA 1 cut(s) 368
BspACI CCGC 1 cut(s) 76
BspANI GGCC 2 cut(s) 183, 286
BspCNI CTCAG 2 cut(s) 211, 426
BspEI TCCGGA 1 cut(s) 62
BspFNI CGCG 1 cut(s) 368
BspLI GGNNCC 3 cut(s) 67, 165, 184
BspT107I GGYRCC 1 cut(s) 163
BsrFI RCCGGY 1 cut(s) 391
BsrI ACTGG 2 cut(s) 128, 241
BssAI RCCGGY 1 cut(s) 391
Bst2UI CCWGG 1 cut(s) 228
Bst4CI ACNGT 1 cut(s) 382
BstBAI YACGTR 2 cut(s) 295, 416
BstC8I GCNNGC 1 cut(s) 366
BstDEI CTNAG 2 cut(s) 219, 434
BstF5I GGATG 3 cut(s) 180, 378, 427
BstFNI CGCG 1 cut(s) 368
BstMWI GCNNNNNNNGC 1 cut(s) 253
BstNI CCWGG 1 cut(s) 228
BstNSI RCATGY 1 cut(s) 198
BstSCI CCNGG 1 cut(s) 226
BstSFI CTRYAG 1 cut(s) 117
BstSLI GKGCMC 1 cut(s) 75
BstUI CGCG 1 cut(s) 368
BstV1I GCAGC 1 cut(s) 421
BsuRI GGCC 2 cut(s) 183, 286
BtsCI GGATG 3 cut(s) 180, 378, 427
BtuMI TCGCGA 1 cut(s) 368
Cac8I GCNNGC 1 cut(s) 366
Cfr10I RCCGGY 1 cut(s) 391
Cfr13I GGNCC 2 cut(s) 182, 285
Csp6I GTAC 4 cut(s) 22, 164, 234, 290
CviAII CATG 4 cut(s) 195, 199, 205, 305
CviJI RGCY 9 cut(s) 48, 68, 183, 263, 286, 364, 412, 428, 438
CviKI_1 RGCY 9 cut(s) 48, 68, 183, 263, 286, 364, 412, 428, 438
CviQI GTAC 4 cut(s) 22, 164, 234, 290
DdeI CTNAG 2 cut(s) 219, 434
Ecl136II GAGCTC 1 cut(s) 364
Eco24I GRGCYC 1 cut(s) 366
Eco53kI GAGCTC 1 cut(s) 364
Eco72I CACGTG 1 cut(s) 295
Eco88I CYCGRG 2 cut(s) 85, 185
EcoICRI GAGCTC 1 cut(s) 364
EcoRII CCWGG 1 cut(s) 226
EcoT22I ATGCAT 1 cut(s) 200
EcoT38I GRGCYC 1 cut(s) 366
FaeI CATG 4 cut(s) 198, 202, 208, 308
FaiI YATR 9 cut(s) 81, 119, 180, 196, 200, 206, 215, 306, 469
FatI CATG 4 cut(s) 194, 198, 204, 304
Fnu4HI GCNGC 1 cut(s) 410
FokI GGATG 3 cut(s) 187, 385, 434
FriOI GRGCYC 1 cut(s) 366
Fsp4HI GCNGC 1 cut(s) 410
FspBI CTAG 3 cut(s) 11, 159, 404
GluI GCNGC 1 cut(s) 410
HaeIII GGCC 2 cut(s) 183, 286
HapII CCGG 2 cut(s) 63, 392
Hin1II CATG 4 cut(s) 198, 202, 208, 308
HincII GTYRAC 1 cut(s) 192
HindII GTYRAC 1 cut(s) 192
HinfI GANTC 4 cut(s) 59, 88, 131, 155
HpaII CCGG 2 cut(s) 63, 392
HphI GGTGA 3 cut(s) 164, 352, 394
Hpy166II GTNNAC 3 cut(s) 73, 192, 292
Hpy188I TCNGA 2 cut(s) 311, 435
Hpy188III TCNNGA 5 cut(s) 63, 85, 135, 353, 367
Hpy8I GTNNAC 3 cut(s) 73, 192, 292
HpyAV CCTTC 3 cut(s) 314, 320, 350
HpyCH4III ACNGT 1 cut(s) 382
HpyCH4IV ACGT 3 cut(s) 294, 386, 415
HpyCH4V TGCA 4 cut(s) 4, 73, 198, 256
HpyF10VI GCNNNNNNNGC 1 cut(s) 253
HpyF3I CTNAG 2 cut(s) 219, 434
HpySE526I ACGT 3 cut(s) 294, 386, 415
Hsp92II CATG 4 cut(s) 198, 202, 208, 308
Kpn2I TCCGGA 1 cut(s) 62
KpnI GGTACC 1 cut(s) 167
LmnI GCTCC 1 cut(s) 65
LpnPI CCDG 8 cut(s) 76, 77, 109, 148, 213, 222, 240, 405
Lsp1109I GCAGC 1 cut(s) 421
LweI GCATC 2 cut(s) 243, 333
MaeI CTAG 3 cut(s) 11, 159, 404
MaeII ACGT 3 cut(s) 294, 386, 415
MaeIII GTNAC 2 cut(s) 376, 382
MfeI CAATTG 1 cut(s) 54
MhlI GDGCHC 2 cut(s) 75, 366
MluCI AATT 1 cut(s) 54
MlyI GAGTC 3 cut(s) 97, 140, 164
MmeI TCCRAC 1 cut(s) 289
Mph1103I ATGCAT 1 cut(s) 200
MroI TCCGGA 1 cut(s) 62
MroXI GAANNNNTTC 1 cut(s) 429
MseI TTAA 1 cut(s) 270
MslI CAYNNNNRTG 2 cut(s) 203, 263
MspA1I CMGCKG 1 cut(s) 263
MspI CCGG 2 cut(s) 63, 392
MspR9I CCNGG 1 cut(s) 228
MunI CAATTG 1 cut(s) 54
MvaI CCWGG 1 cut(s) 228
MvnI CGCG 1 cut(s) 368
MwoI GCNNNNNNNGC 1 cut(s) 253
NlaIII CATG 4 cut(s) 198, 202, 208, 308
NlaIV GGNNCC 3 cut(s) 67, 165, 184
NmuCI GTSAC 1 cut(s) 382
NruI TCGCGA 1 cut(s) 368
NsiI ATGCAT 1 cut(s) 200
NspI RCATGY 1 cut(s) 198
OliI CACNNNNGTG 1 cut(s) 263
PaeR7I CTCGAG 1 cut(s) 85
PdmI GAANNNNTTC 1 cut(s) 429
PfeI GAWTC 1 cut(s) 59
PflMI CCANNNNNTGG 1 cut(s) 452
PkrI GCNGC 1 cut(s) 411
PleI GAGTC 3 cut(s) 96, 139, 163
PmaCI CACGTG 1 cut(s) 295
PmlI CACGTG 1 cut(s) 295
PpsI GAGTC 3 cut(s) 96, 139, 163
Ppu21I YACGTR 2 cut(s) 295, 416
Psp124BI GAGCTC 1 cut(s) 366
Psp6I CCWGG 1 cut(s) 226
PspCI CACGTG 1 cut(s) 295
PspGI CCWGG 1 cut(s) 226
PspN4I GGNNCC 3 cut(s) 67, 165, 184
PspPI GGNCC 2 cut(s) 182, 285
PvuII CAGCTG 1 cut(s) 263
RruI TCGCGA 1 cut(s) 368
RsaI GTAC 4 cut(s) 23, 165, 235, 291
RsaNI GTAC 4 cut(s) 22, 164, 234, 290
RseI CAYNNNNRTG 2 cut(s) 203, 263
SacI GAGCTC 1 cut(s) 366
SaqAI TTAA 1 cut(s) 270
SatI GCNGC 1 cut(s) 410
Sau96I GGNCC 2 cut(s) 182, 285
ScaI AGTACT 1 cut(s) 235
SchI GAGTC 3 cut(s) 97, 140, 164
ScrFI CCNGG 1 cut(s) 228
SduI GDGCHC 2 cut(s) 75, 366
SetI ASST 9 cut(s) 154, 169, 265, 297, 366, 389, 414, 418, 430
SfaNI GCATC 2 cut(s) 243, 333
SfcI CTRYAG 1 cut(s) 117
Sfr274I CTCGAG 1 cut(s) 85
SlaI CTCGAG 1 cut(s) 85
SmiMI CAYNNNNRTG 2 cut(s) 203, 263
SmlI CTYRAG 1 cut(s) 85
SmoI CTYRAG 1 cut(s) 85
Sse9I AATT 1 cut(s) 54
SsiI CCGC 1 cut(s) 76
SspMI CTAG 3 cut(s) 11, 159, 404
SstI GAGCTC 1 cut(s) 366
StyD4I CCNGG 1 cut(s) 226
TaaI ACNGT 1 cut(s) 382
TaiI ACGT 3 cut(s) 297, 389, 418
TaqI TCGA 1 cut(s) 86
TasI AATT 1 cut(s) 54
TatI WGTACW 1 cut(s) 233
TfiI GAWTC 1 cut(s) 59
Tru1I TTAA 1 cut(s) 270
Tru9I TTAA 1 cut(s) 270
TseFI GTSAC 1 cut(s) 382
TseI GCWGC 1 cut(s) 409
Tsp45I GTSAC 1 cut(s) 382
TspDTI ATGAA 1 cut(s) 438
TspGWI ACGGA 1 cut(s) 290
Van91I CCANNNNNTGG 1 cut(s) 452
VneI GTGCAC 1 cut(s) 71
XceI RCATGY 1 cut(s) 198
XhoI CTCGAG 1 cut(s) 85
XmnI GAANNNNTTC 1 cut(s) 429
XspI CTAG 3 cut(s) 11, 159, 404
ZrmI AGTACT 1 cut(s) 235
Zsp2I ATGCAT 1 cut(s) 200
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.