Rh5BG317500

Transferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0004543
Physical Location & Seq
Forward (+)
42296466 .. 42303885
7420 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG317500.1

Sequence Viewer

Length: 1413 bp
ATGATGAAGCAGAACAAGAGCAACCGGGTGGCTGTCCGTTCAAAGCTAACGGCAGTATCCAGCCGGCCGGTGAACCCGGGTACGATCCATTCTTTCACGGGTCTGGATCATGCAATGGCCCTGCACAGCGTTCACGTGATATTCTACTACAAGGAGAAGCTGTTTTCATATTTTGACTTGGACCCGTTTAGGGTGTGTCTCTCGGAGACCCTATCGCTGTACCCGCCGGTGACGGGTAGGATAGTCCGGAGAGAGGTCGACGGTGAGTGGGAGGTCAAGTGTAACGATGCCGGCGTGAGGGTGGTGAAGGCCACGGTGGCGACAACACTTGATGAGTGGCTGGCAACTGCTGATGGGGCGGAGGAGAGGTTGTTGACGGCGTGGTATGATATGCCTCATGGTGATTCTAGTTCATGGTCGCCGTATAGAATCCAGATAAATGAATTTGAAGGAGGAGGAGTGGCTATTGGACTAAGTTGCTCTCACATGCAAGCAGACCCAACTTGTGTGACCCTACTCATCAAGTCATGGGCCGAGACTCACCGCCGGGAACCCGTCGTACACCCGCCTTCCTTTGACGACTTATCGAATTCACCACTCACTCGCGGACTCAACATTCACAACACAAACACAAAATCATCACGCGCGTATTACGAAGCCAAGTCCATGGCAGCACAGACCTCATTAATACTAAAGAAAATGGGCACAGCCACTTTCAAATTTTCCAATGAAGTGATCAAGCAAAGCCTCTTAGAAATCCACCAAACATGCTCTGTTGCAACCCCGTTTGATTTGCTGGCCGCACTCTTTTGGACACGCATTGCTCGCTTGAAGCACCCGAAAAGCAAAAGCAAGCACTCCCTCTCCATTTGTGTCGACTTCAGGAAGAAGCTCCTGCTCTCTTATGGGTACTACGGTAATGCCTTACATTTTTCGTTGCTTTCATTACCTGATGTGGAAGAAAAGGAAGACTTCAGAGATGTGGCGGAAGCCGTGCACTACCATGTGTCGAGTCAGGGCGAAGGGGAGTTTTGGTCTGCTTTAGACTGGTTTGAATCACGAAAGGAAGAGGGAGGTCAGTTTGGGGCACCTTTTAGAATGTACGGCCCCGAATTGACATGTATGAGCATGGAGCACATGGTTGACTTTCCTGGGATTACTGGGAATAAACTGTTGATGAATACAGCTGTGTTTGATAAGGAGAATAGGCCCGTACACGTGTCATATCATGTTGGAAATGTGGAAGGGGAAGGGTTGATAATGGTGATGCCAGCTCTGGAAGGAGGGCTGGCAAGGATGGTTACGGTGACATTGCCGGAGGAGGAACTGGAGCAGTTATGTCAGGATGAAGCCATTTCGAGCTTTTCGAGCTTAAACCCAATAATGGTCCTAAGCGGGACGAGACGAGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Transferase

Protein Analysis

470

Amino Acids

52.64

Weight (kDa)

6.15

Isoelectric Point (pI)

40.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transferase PF02458 34 - 449 6.7e-40 Transferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1087
AccI GTMKAC 2 cut(s) 258, 876
AccII CGCG 3 cut(s) 606, 645, 647
AccIII TCCGGA 1 cut(s) 246
AciI CCGC 8 cut(s) 224, 359, 544, 566, 606, 801, 986, 1395
AclWI GGATC 2 cut(s) 79, 114
AcoI YGGCCR 2 cut(s) 65, 798
AcsI RAATTY 3 cut(s) 443, 589, 719
AcuI CTGAAG 2 cut(s) 865, 958
AcvI CACGTG 2 cut(s) 136, 1219
AfaI GTAC 6 cut(s) 82, 221, 561, 911, 1103, 1215
AfiI CCNNNNNNNGG 5 cut(s) 190, 233, 253, 297, 1384
AflIII ACRYGT 3 cut(s) 1118, 1216, 1218
AgsI TTSAA 5 cut(s) 42, 449, 718, 832, 1055
AjnI CCWGG 1 cut(s) 1150
AluBI AGCT 7 cut(s) 46, 160, 892, 1187, 1274, 1362, 1371
AluI AGCT 7 cut(s) 46, 160, 892, 1187, 1274, 1362, 1371
Alw21I GWGCWC 2 cut(s) 999, 1137
Alw26I GTCTC 4 cut(s) 200, 203, 530, 1396
Alw44I GTGCAC 1 cut(s) 995
AlwI GGATC 2 cut(s) 79, 114
Ama87I CYCGRG 1 cut(s) 76
Aor13HI TCCGGA 1 cut(s) 246
AoxI GGCC 7 cut(s) 65, 117, 309, 531, 798, 1105, 1208
ApaLI GTGCAC 1 cut(s) 995
ApeKI GCWGC 1 cut(s) 671
ApoI RAATTY 3 cut(s) 443, 589, 719
AseI ATTAAT 1 cut(s) 686
AspLEI GCGC 1 cut(s) 647
AspS9I GGNCC 6 cut(s) 118, 181, 531, 1106, 1209, 1387
AsuC2I CCSGG 4 cut(s) 26, 77, 78, 548
AsuHPI GGTGA 9 cut(s) 82, 241, 275, 316, 413, 533, 585, 1276, 1318
AvaI CYCGRG 1 cut(s) 76
AvaII GGWCC 2 cut(s) 181, 1387
BaeGI GKGCMC 3 cut(s) 707, 999, 1090
BaeI ACNNNNGTAYC 4 cut(s) 39, 72, 901, 934
BanI GGYRCC 1 cut(s) 1087
BbrPI CACGTG 2 cut(s) 136, 1219
BbsI GAAGAC 1 cut(s) 975
Bbv12I GWGCWC 2 cut(s) 999, 1137
BbvI GCAGC 1 cut(s) 683
BccI CCATC 2 cut(s) 347, 1291
BceAI ACGGC 5 cut(s) 66, 393, 406, 977, 1120
BciT130I CCWGG 1 cut(s) 1152
BciVI GTATCC 1 cut(s) 67
BclI TGATCA 1 cut(s) 735
BcnI CCSGG 4 cut(s) 26, 77, 78, 548
BcoDI GTCTC 4 cut(s) 200, 203, 530, 1396
BfaI CTAG 1 cut(s) 408
BfuI GTATCC 1 cut(s) 67
BglI GCCNNNNNGGC 1 cut(s) 317
BisI GCNGC 2 cut(s) 672, 801
BlsI GCNGC 2 cut(s) 673, 802
Bme1390I CCNGG 5 cut(s) 26, 77, 78, 548, 1152
Bme18I GGWCC 2 cut(s) 181, 1387
BmeT110I CYCGRG 1 cut(s) 76
BmgT120I GGNCC 6 cut(s) 118, 181, 531, 1106, 1209, 1387
BmiI GGNNCC 4 cut(s) 183, 552, 1089, 1108
BmrFI CCNGG 5 cut(s) 26, 77, 78, 548, 1152
BmrI ACTGGG 1 cut(s) 1170
BmsI GCATC 2 cut(s) 277, 1257
BmuI ACTGGG 1 cut(s) 1170
BpiI GAAGAC 1 cut(s) 975
BpmI CTGGAG 1 cut(s) 1349
Bpu10I CCTNAGC 1 cut(s) 1391
BpuMI CCSGG 4 cut(s) 26, 77, 78, 548
BsaAI YACGTR 2 cut(s) 136, 1219
BsaI GGTCTC 1 cut(s) 200
BsaJI CCNNGG 4 cut(s) 76, 312, 666, 1151
BsaWI WCCGGW 1 cut(s) 246
Bsc4I CCNNNNNNNGG 5 cut(s) 190, 233, 253, 297, 1384
Bse118I RCCGGY 4 cut(s) 63, 67, 226, 290
Bse1I ACTGG 3 cut(s) 1052, 1165, 1332
Bse3DI GCAATG 3 cut(s) 120, 819, 1310
BseAI TCCGGA 1 cut(s) 246
BseBI CCWGG 1 cut(s) 1152
BseDI CCNNGG 4 cut(s) 76, 312, 666, 1151
BseGI GGATG 2 cut(s) 1302, 1351
BseLI CCNNNNNNNGG 5 cut(s) 190, 233, 253, 297, 1384
BseMI GCAATG 3 cut(s) 120, 819, 1310
BseNI ACTGG 3 cut(s) 1052, 1165, 1332
BseRI GAGGAG 4 cut(s) 377, 468, 471, 1334
BseSI GKGCMC 3 cut(s) 707, 999, 1090
BseX3I CGGCCG 1 cut(s) 65
BseXI GCAGC 1 cut(s) 683
BsgI GTGCAG 1 cut(s) 107
Bsh1236I CGCG 3 cut(s) 606, 645, 647
Bsh1285I CGRYCG 1 cut(s) 68
BshFI GGCC 7 cut(s) 67, 119, 311, 533, 800, 1107, 1210
BshNI GGYRCC 1 cut(s) 1087
BsiEI CGRYCG 1 cut(s) 68
BsiHKAI GWGCWC 2 cut(s) 999, 1137
BsiHKCI CYCGRG 1 cut(s) 76
BsiSI CCGG 9 cut(s) 25, 64, 68, 77, 227, 247, 291, 547, 1316
BslI CCNNNNNNNGG 5 cut(s) 190, 233, 253, 297, 1384
BsmAI GTCTC 4 cut(s) 200, 203, 530, 1396
BsmBI CGTCTC 1 cut(s) 1396
BsnI GGCC 7 cut(s) 67, 119, 311, 533, 800, 1107, 1210
Bso31I GGTCTC 1 cut(s) 200
BsoBI CYCGRG 1 cut(s) 76
Bsp1286I GDGCHC 4 cut(s) 707, 999, 1090, 1137
Bsp13I TCCGGA 1 cut(s) 246
Bsp143I GATC 3 cut(s) 84, 106, 735
Bsp19I CCATGG 1 cut(s) 666
BspACI CCGC 8 cut(s) 224, 359, 544, 566, 606, 801, 986, 1395
BspANI GGCC 7 cut(s) 67, 119, 311, 533, 800, 1107, 1210
BspEI TCCGGA 1 cut(s) 246
BspFNI CGCG 3 cut(s) 606, 645, 647
BspLI GGNNCC 4 cut(s) 183, 552, 1089, 1108
BspPI GGATC 2 cut(s) 79, 114
BspT107I GGYRCC 1 cut(s) 1087
BspTNI GGTCTC 1 cut(s) 200
BsrDI GCAATG 3 cut(s) 120, 819, 1310
BsrFI RCCGGY 4 cut(s) 63, 67, 226, 290
BsrI ACTGG 3 cut(s) 1052, 1165, 1332
BssAI RCCGGY 4 cut(s) 63, 67, 226, 290
BssECI CCNNGG 4 cut(s) 76, 312, 666, 1151
BssMI GATC 3 cut(s) 84, 106, 735
BssT1I CCWWGG 1 cut(s) 666
Bst2UI CCWGG 1 cut(s) 1152
Bst4CI ACNGT 5 cut(s) 263, 316, 917, 1173, 1306
Bst6I CTCTTC 1 cut(s) 1062
BstBAI YACGTR 2 cut(s) 136, 1219
BstC8I GCNNGC 9 cut(s) 65, 292, 342, 492, 798, 826, 854, 1272, 1290
BstDEI CTNAG 3 cut(s) 473, 751, 1391
BstDSI CCRYGG 2 cut(s) 312, 666
BstF5I GGATG 2 cut(s) 1302, 1351
BstFNI CGCG 3 cut(s) 606, 645, 647
BstHHI GCGC 1 cut(s) 647
BstKTI GATC 3 cut(s) 87, 109, 738
BstMAI GTCTC 4 cut(s) 200, 203, 530, 1396
BstMBI GATC 3 cut(s) 84, 106, 735
BstMCI CGRYCG 1 cut(s) 68
BstMWI GCNNNNNNNGC 5 cut(s) 223, 317, 356, 825, 1368
BstNI CCWGG 1 cut(s) 1152
BstNSI RCATGY 3 cut(s) 490, 771, 1122
BstSCI CCNGG 5 cut(s) 24, 75, 76, 546, 1150
BstSLI GKGCMC 3 cut(s) 707, 999, 1090
BstUI CGCG 3 cut(s) 606, 645, 647
BstV1I GCAGC 1 cut(s) 683
BstV2I GAAGAC 1 cut(s) 975
BstXI CCANNNNNNTGG 1 cut(s) 667
BstZI CGGCCG 1 cut(s) 65
BsuI GTATCC 1 cut(s) 67
BsuRI GGCC 7 cut(s) 67, 119, 311, 533, 800, 1107, 1210
BtgI CCRYGG 2 cut(s) 312, 666
BtsCI GGATG 2 cut(s) 1302, 1351
Cac8I GCNNGC 9 cut(s) 65, 292, 342, 492, 798, 826, 854, 1272, 1290
CfoI GCGC 1 cut(s) 647
Cfr10I RCCGGY 4 cut(s) 63, 67, 226, 290
Cfr13I GGNCC 6 cut(s) 118, 181, 531, 1106, 1209, 1387
Cfr9I CCCGGG 1 cut(s) 76
Csp6I GTAC 6 cut(s) 81, 220, 560, 910, 1102, 1214
CviQI GTAC 6 cut(s) 81, 220, 560, 910, 1102, 1214
DdeI CTNAG 3 cut(s) 473, 751, 1391
DpnI GATC 3 cut(s) 86, 108, 737
DpnII GATC 3 cut(s) 84, 106, 735
EaeI YGGCCR 2 cut(s) 65, 798
EagI CGGCCG 1 cut(s) 65
Eam1104I CTCTTC 1 cut(s) 1062
EarI CTCTTC 1 cut(s) 1062
EciI GGCGGA 2 cut(s) 374, 1001
EclXI CGGCCG 1 cut(s) 65
Eco130I CCWWGG 1 cut(s) 666
Eco31I GGTCTC 1 cut(s) 200
Eco47I GGWCC 2 cut(s) 181, 1387
Eco52I CGGCCG 1 cut(s) 65
Eco57I CTGAAG 2 cut(s) 865, 958
Eco72I CACGTG 2 cut(s) 136, 1219
Eco88I CYCGRG 1 cut(s) 76
EcoRI GAATTC 1 cut(s) 589
EcoRII CCWGG 1 cut(s) 1150
EcoT14I CCWWGG 1 cut(s) 666
ErhI CCWWGG 1 cut(s) 666
Esp3I CGTCTC 1 cut(s) 1396
FalI AAGNNNNNCTT 2 cut(s) 956, 988
FauI CCCGC 3 cut(s) 231, 573, 1388
FbaI TGATCA 1 cut(s) 735
FblI GTMKAC 2 cut(s) 258, 876
Fnu4HI GCNGC 2 cut(s) 672, 801
FokI GGATG 2 cut(s) 1309, 1358
Fsp4HI GCNGC 2 cut(s) 672, 801
FspBI CTAG 1 cut(s) 408
GlaI GCGC 1 cut(s) 646
GluI GCNGC 2 cut(s) 672, 801
GsuI CTGGAG 1 cut(s) 1349
HaeIII GGCC 7 cut(s) 67, 119, 311, 533, 800, 1107, 1210
HapII CCGG 9 cut(s) 25, 64, 68, 77, 227, 247, 291, 547, 1316
HhaI GCGC 1 cut(s) 647
Hin6I GCGC 1 cut(s) 645
HinP1I GCGC 1 cut(s) 645
HincII GTYRAC 4 cut(s) 259, 375, 877, 1144
HindII GTYRAC 4 cut(s) 259, 375, 877, 1144
HinfI GANTC 6 cut(s) 404, 429, 538, 609, 1012, 1055
HpaII CCGG 9 cut(s) 25, 64, 68, 77, 227, 247, 291, 547, 1316
HphI GGTGA 9 cut(s) 82, 241, 275, 316, 413, 533, 585, 1276, 1318
Hpy166II GTNNAC 9 cut(s) 73, 133, 259, 375, 562, 877, 997, 1144, 1216
Hpy188I TCNGA 2 cut(s) 205, 977
Hpy188III TCNNGA 7 cut(s) 104, 247, 433, 883, 1059, 1277, 1343
Hpy8I GTNNAC 9 cut(s) 73, 133, 259, 375, 562, 877, 997, 1144, 1216
Hpy99I CGWCG 2 cut(s) 263, 560
HpyAV CCTTC 7 cut(s) 301, 443, 579, 1016, 1238, 1244, 1274
HpyCH4III ACNGT 5 cut(s) 263, 316, 917, 1173, 1306
HpyCH4IV ACGT 2 cut(s) 135, 1218
HpyCH4V TGCA 5 cut(s) 113, 124, 490, 779, 997
HpyF10VI GCNNNNNNNGC 5 cut(s) 223, 317, 356, 825, 1368
HpyF3I CTNAG 3 cut(s) 473, 751, 1391
HpySE526I ACGT 2 cut(s) 135, 1218
HspAI GCGC 1 cut(s) 645
Kpn2I TCCGGA 1 cut(s) 246
KroI GCCGGC 2 cut(s) 63, 290
KroNI GCCGGC 2 cut(s) 65, 292
Ksp22I TGATCA 1 cut(s) 735
Kzo9I GATC 3 cut(s) 84, 106, 735
LmnI GCTCC 3 cut(s) 897, 1132, 1330
Lsp1109I GCAGC 1 cut(s) 683
LweI GCATC 2 cut(s) 277, 1257
MaeI CTAG 1 cut(s) 408
MaeII ACGT 2 cut(s) 135, 1218
MaeIII GTNAC 5 cut(s) 229, 281, 508, 1300, 1306
MalI GATC 3 cut(s) 86, 108, 737
MboI GATC 3 cut(s) 84, 106, 735
MboII GAAGA 4 cut(s) 898, 971, 980, 1079
MhlI GDGCHC 4 cut(s) 707, 999, 1090, 1137
MluCI AATT 4 cut(s) 443, 589, 719, 1112
MlyI GAGTC 3 cut(s) 532, 603, 1021
MmeI TCCRAC 1 cut(s) 1213
MroI TCCGGA 1 cut(s) 246
MroNI GCCGGC 2 cut(s) 63, 290
MseI TTAA 2 cut(s) 686, 1373
MslI CAYNNNNRTG 1 cut(s) 1002
MspA1I CMGCKG 1 cut(s) 1187
MspI CCGG 9 cut(s) 25, 64, 68, 77, 227, 247, 291, 547, 1316
MspR9I CCNGG 5 cut(s) 26, 77, 78, 548, 1152
MvaI CCWGG 1 cut(s) 1152
MvnI CGCG 3 cut(s) 606, 645, 647
MwoI GCNNNNNNNGC 5 cut(s) 223, 317, 356, 825, 1368
NaeI GCCGGC 2 cut(s) 65, 292
NciI CCSGG 4 cut(s) 26, 77, 78, 548
NcoI CCATGG 1 cut(s) 666
NdeII GATC 3 cut(s) 84, 106, 735
NgoMIV GCCGGC 2 cut(s) 63, 290
NlaIV GGNNCC 4 cut(s) 183, 552, 1089, 1108
NmeAIII GCCGAG 1 cut(s) 559
NmuCI GTSAC 3 cut(s) 229, 508, 1306
NspI RCATGY 3 cut(s) 490, 771, 1122
PciI ACATGT 1 cut(s) 1118
PcsI WCGNNNNNNNCGW 2 cut(s) 291, 1364
PdiI GCCGGC 2 cut(s) 65, 292
PfeI GAWTC 3 cut(s) 404, 429, 1055
PkrI GCNGC 2 cut(s) 673, 802
PleI GAGTC 3 cut(s) 532, 603, 1020
PmaCI CACGTG 2 cut(s) 136, 1219
PmlI CACGTG 2 cut(s) 136, 1219
PpsI GAGTC 3 cut(s) 532, 603, 1020
Ppu21I YACGTR 2 cut(s) 136, 1219
PscI ACATGT 1 cut(s) 1118
PshBI ATTAAT 1 cut(s) 686
Psp6I CCWGG 1 cut(s) 1150
PspCI CACGTG 2 cut(s) 136, 1219
PspGI CCWGG 1 cut(s) 1150
PspN4I GGNNCC 4 cut(s) 183, 552, 1089, 1108
PspPI GGNCC 6 cut(s) 118, 181, 531, 1106, 1209, 1387
PsrI GAACNNNNNNTAC 2 cut(s) 543, 575
PvuII CAGCTG 1 cut(s) 1187
RsaI GTAC 6 cut(s) 82, 221, 561, 911, 1103, 1215
RsaNI GTAC 6 cut(s) 81, 220, 560, 910, 1102, 1214
RseI CAYNNNNRTG 1 cut(s) 1002
SalI GTCGAC 2 cut(s) 257, 875
SaqAI TTAA 2 cut(s) 686, 1373
SatI GCNGC 2 cut(s) 672, 801
Sau3AI GATC 3 cut(s) 84, 106, 735
Sau96I GGNCC 6 cut(s) 118, 181, 531, 1106, 1209, 1387
SchI GAGTC 3 cut(s) 532, 603, 1021
ScrFI CCNGG 5 cut(s) 26, 77, 78, 548, 1152
SduI GDGCHC 4 cut(s) 707, 999, 1090, 1137
SfaNI GCATC 2 cut(s) 277, 1257
SgrAI CRCCGGYG 1 cut(s) 226
SinI GGWCC 2 cut(s) 181, 1387
SmaI CCCGGG 1 cut(s) 78
SmiMI CAYNNNNRTG 1 cut(s) 1002
Sse9I AATT 4 cut(s) 443, 589, 719, 1112
SsiI CCGC 8 cut(s) 224, 359, 544, 566, 606, 801, 986, 1395
SspMI CTAG 1 cut(s) 408
StyD4I CCNGG 5 cut(s) 24, 75, 76, 546, 1150
StyI CCWWGG 1 cut(s) 666
TaaI ACNGT 5 cut(s) 263, 316, 917, 1173, 1306
TaiI ACGT 2 cut(s) 138, 1221
TaqI TCGA 6 cut(s) 258, 587, 876, 1010, 1358, 1367
TasI AATT 4 cut(s) 443, 589, 719, 1112
TauI GCSGC 1 cut(s) 803
TfiI GAWTC 3 cut(s) 404, 429, 1055
Tru1I TTAA 2 cut(s) 686, 1373
Tru9I TTAA 2 cut(s) 686, 1373
TseFI GTSAC 3 cut(s) 229, 508, 1306
TseI GCWGC 1 cut(s) 671
Tsp45I GTSAC 3 cut(s) 229, 508, 1306
TspDTI ATGAA 8 cut(s) 20, 156, 402, 456, 744, 933, 1193, 1362
TspGWI ACGGA 1 cut(s) 26
TspMI CCCGGG 1 cut(s) 76
VneI GTGCAC 1 cut(s) 995
VpaK11BI GGWCC 2 cut(s) 181, 1387
VspI ATTAAT 1 cut(s) 686
XapI RAATTY 3 cut(s) 443, 589, 719
XceI RCATGY 3 cut(s) 490, 771, 1122
XmaI CCCGGG 1 cut(s) 76
XmiI GTMKAC 2 cut(s) 258, 876
XspI CTAG 1 cut(s) 408
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.