Rh5DG328200

Transferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0004543
Physical Location & Seq
Reverse (-)
43167329 .. 43178713
11385 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG328200.1

Sequence Viewer

Length: 708 bp
ATGCAGCTCATTCTCCACATGCCCCATTCGGCCAGTTACATACCCAAGCTTACTATAAATGAGAGGACAAATTATAGTCCTTGTATACTCGATTTCTACGTGCTCCATATTTTCTACACAACTCTTCCTAATTTCCTTTTCTCTCTCAACATGATGAAGCAGAACAAGAGCAACCGGGTGGCTGTCCGTTCAAAGCTAACGGCAGTATCCAGCCGGCCGGTGAACCCGGGTACGATCCATTCTTTCACGGGTCTGGATCATGCAATGGCCCTGCACAGCGTTCACGTGATATTCTACTACAAGGAGAAGCTGTTTTCATATTTTGACTTGGACCCGTTTAGGGTGTGTCTCTCGGAGACCCTATCGCTGTACCCGCCAGTGACGGGTAGGATAGTCCGGAGAGAGGTCGACGGTGAGTGGGAGGTCAAGTGTAACGATGCCGGCGTGAGGGTGGTGAAGGCCACGGTGGCGACAACACTTGATGAGTGGCTGGCAACTGCTGATGGGGCGGAGGAGAGGTTGTTGACGGCGTGGGATGATATGCCTCATGGTGATTCTAGTTCATGGTCGCCGTATAGAATCCAGACTATGCGAAGGAGAAGGCTGCTGAACAATCAGCAAAAAAGGCTGCTTGTAGGGCCAAAAAATCAAAGATGGCTGCAGGGACAAGTGTGGAAGCCAATTAATGGATGGCTACATTGCTGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Transferase

Protein Analysis

235

Amino Acids

27.29

Weight (kDa)

9.41

Isoelectric Point (pI)

49.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transferase PF02458 83 - 176 4.8e-13 Transferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 686
AccI GTMKAC 2 cut(s) 85, 408
AccIII TCCGGA 1 cut(s) 396
AciI CCGC 2 cut(s) 374, 509
AclWI GGATC 2 cut(s) 229, 264
AcoI YGGCCR 2 cut(s) 30, 215
AcvI CACGTG 1 cut(s) 286
AfaI GTAC 2 cut(s) 232, 371
AfiI CCNNNNNNNGG 5 cut(s) 340, 383, 403, 447, 686
AgsI TTSAA 1 cut(s) 192
AluBI AGCT 4 cut(s) 7, 49, 196, 310
AluI AGCT 4 cut(s) 7, 49, 196, 310
Alw21I GWGCWC 1 cut(s) 105
Alw26I GTCTC 2 cut(s) 350, 353
AlwI GGATC 2 cut(s) 229, 264
Ama87I CYCGRG 1 cut(s) 226
Aor13HI TCCGGA 1 cut(s) 396
AoxI GGCC 5 cut(s) 30, 215, 267, 459, 638
ApeKI GCWGC 4 cut(s) 4, 604, 628, 658
AseI ATTAAT 1 cut(s) 684
AspS9I GGNCC 3 cut(s) 268, 331, 638
AsuC2I CCSGG 3 cut(s) 176, 227, 228
AsuHPI GGTGA 4 cut(s) 232, 425, 466, 563
AvaI CYCGRG 1 cut(s) 226
AvaII GGWCC 1 cut(s) 331
BaeI ACNNNNGTAYC 2 cut(s) 189, 222
BbrPI CACGTG 1 cut(s) 286
Bbv12I GWGCWC 1 cut(s) 105
BbvI GCAGC 4 cut(s) 16, 591, 615, 645
BccI CCATC 3 cut(s) 497, 648, 684
BceAI ACGGC 3 cut(s) 216, 543, 556
BciVI GTATCC 1 cut(s) 217
BcnI CCSGG 3 cut(s) 176, 227, 228
BcoDI GTCTC 2 cut(s) 350, 353
BfaI CTAG 1 cut(s) 558
BfmI CTRYAG 1 cut(s) 659
BfuI GTATCC 1 cut(s) 217
BglI GCCNNNNNGGC 1 cut(s) 467
BisI GCNGC 4 cut(s) 5, 605, 629, 659
BlsI GCNGC 4 cut(s) 6, 606, 630, 660
Bme1390I CCNGG 3 cut(s) 176, 227, 228
Bme18I GGWCC 1 cut(s) 331
BmeT110I CYCGRG 1 cut(s) 226
BmgT120I GGNCC 3 cut(s) 268, 331, 638
BmiI GGNNCC 1 cut(s) 333
BmrFI CCNGG 3 cut(s) 176, 227, 228
BmsI GCATC 1 cut(s) 427
BpuMI CCSGG 3 cut(s) 176, 227, 228
BsaAI YACGTR 2 cut(s) 100, 286
BsaI GGTCTC 1 cut(s) 350
BsaJI CCNNGG 2 cut(s) 226, 462
BsaWI WCCGGW 1 cut(s) 396
BsaXI ACNNNNNCTCC 8 cut(s) 296, 326, 413, 443, 503, 506, 533, 536
Bsc4I CCNNNNNNNGG 5 cut(s) 340, 383, 403, 447, 686
Bse118I RCCGGY 3 cut(s) 213, 217, 440
Bse1I ACTGG 2 cut(s) 33, 377
Bse3DI GCAATG 2 cut(s) 270, 697
BseAI TCCGGA 1 cut(s) 396
BseDI CCNNGG 2 cut(s) 226, 462
BseGI GGATG 2 cut(s) 541, 695
BseLI CCNNNNNNNGG 5 cut(s) 340, 383, 403, 447, 686
BseMI GCAATG 2 cut(s) 270, 697
BseNI ACTGG 2 cut(s) 33, 377
BseRI GAGGAG 1 cut(s) 527
BseX3I CGGCCG 1 cut(s) 215
BseXI GCAGC 4 cut(s) 16, 591, 615, 645
BsgI GTGCAG 1 cut(s) 257
Bsh1285I CGRYCG 1 cut(s) 218
BshFI GGCC 5 cut(s) 32, 217, 269, 461, 640
BsiEI CGRYCG 1 cut(s) 218
BsiHKAI GWGCWC 1 cut(s) 105
BsiHKCI CYCGRG 1 cut(s) 226
BsiSI CCGG 6 cut(s) 175, 214, 218, 227, 397, 441
BslFI GGGAC 1 cut(s) 678
BslI CCNNNNNNNGG 5 cut(s) 340, 383, 403, 447, 686
BsmAI GTCTC 2 cut(s) 350, 353
BsmFI GGGAC 1 cut(s) 678
BsnI GGCC 5 cut(s) 32, 217, 269, 461, 640
Bso31I GGTCTC 1 cut(s) 350
BsoBI CYCGRG 1 cut(s) 226
Bsp1286I GDGCHC 1 cut(s) 105
Bsp13I TCCGGA 1 cut(s) 396
Bsp143I GATC 2 cut(s) 234, 256
BspACI CCGC 2 cut(s) 374, 509
BspANI GGCC 5 cut(s) 32, 217, 269, 461, 640
BspEI TCCGGA 1 cut(s) 396
BspLI GGNNCC 1 cut(s) 333
BspMAI CTGCAG 1 cut(s) 663
BspPI GGATC 2 cut(s) 229, 264
BspTNI GGTCTC 1 cut(s) 350
BsrDI GCAATG 2 cut(s) 270, 697
BsrFI RCCGGY 3 cut(s) 213, 217, 440
BsrI ACTGG 2 cut(s) 33, 377
BssAI RCCGGY 3 cut(s) 213, 217, 440
BssECI CCNNGG 2 cut(s) 226, 462
BssMI GATC 2 cut(s) 234, 256
BssNAI GTATAC 1 cut(s) 86
Bst1107I GTATAC 1 cut(s) 86
Bst4CI ACNGT 2 cut(s) 413, 466
Bst6I CTCTTC 1 cut(s) 129
BstBAI YACGTR 2 cut(s) 100, 286
BstC8I GCNNGC 3 cut(s) 215, 442, 492
BstDSI CCRYGG 1 cut(s) 462
BstF5I GGATG 2 cut(s) 541, 695
BstKTI GATC 2 cut(s) 237, 259
BstMAI GTCTC 2 cut(s) 350, 353
BstMBI GATC 2 cut(s) 234, 256
BstMCI CGRYCG 1 cut(s) 218
BstMWI GCNNNNNNNGC 5 cut(s) 373, 467, 506, 625, 637
BstNSI RCATGY 1 cut(s) 22
BstSCI CCNGG 3 cut(s) 174, 225, 226
BstSFI CTRYAG 1 cut(s) 659
BstV1I GCAGC 4 cut(s) 16, 591, 615, 645
BstZ17I GTATAC 1 cut(s) 86
BstZI CGGCCG 1 cut(s) 215
BsuI GTATCC 1 cut(s) 217
BsuRI GGCC 5 cut(s) 32, 217, 269, 461, 640
BtgI CCRYGG 1 cut(s) 462
BtsCI GGATG 2 cut(s) 541, 695
BtsIMutI CAGTG 1 cut(s) 384
Cac8I GCNNGC 3 cut(s) 215, 442, 492
Cfr10I RCCGGY 3 cut(s) 213, 217, 440
Cfr13I GGNCC 3 cut(s) 268, 331, 638
Cfr9I CCCGGG 1 cut(s) 226
Csp6I GTAC 2 cut(s) 231, 370
CviAII CATG 5 cut(s) 19, 151, 260, 548, 564
CviQI GTAC 2 cut(s) 231, 370
DpnI GATC 2 cut(s) 236, 258
DpnII GATC 2 cut(s) 234, 256
EaeI YGGCCR 2 cut(s) 30, 215
EagI CGGCCG 1 cut(s) 215
Eam1104I CTCTTC 1 cut(s) 129
EarI CTCTTC 1 cut(s) 129
EciI GGCGGA 1 cut(s) 524
EclXI CGGCCG 1 cut(s) 215
Eco31I GGTCTC 1 cut(s) 350
Eco47I GGWCC 1 cut(s) 331
Eco52I CGGCCG 1 cut(s) 215
Eco72I CACGTG 1 cut(s) 286
Eco88I CYCGRG 1 cut(s) 226
FaeI CATG 5 cut(s) 22, 154, 263, 551, 567
FaqI GGGAC 1 cut(s) 678
FatI CATG 5 cut(s) 18, 150, 259, 547, 563
FauI CCCGC 1 cut(s) 381
FblI GTMKAC 2 cut(s) 85, 408
Fnu4HI GCNGC 4 cut(s) 5, 605, 629, 659
FokI GGATG 2 cut(s) 548, 702
Fsp4HI GCNGC 4 cut(s) 5, 605, 629, 659
FspBI CTAG 1 cut(s) 558
GluI GCNGC 4 cut(s) 5, 605, 629, 659
HaeIII GGCC 5 cut(s) 32, 217, 269, 461, 640
HapII CCGG 6 cut(s) 175, 214, 218, 227, 397, 441
Hin1II CATG 5 cut(s) 22, 154, 263, 551, 567
HincII GTYRAC 2 cut(s) 409, 525
HindII GTYRAC 2 cut(s) 409, 525
HindIII AAGCTT 1 cut(s) 47
HinfI GANTC 2 cut(s) 554, 579
HpaII CCGG 6 cut(s) 175, 214, 218, 227, 397, 441
HphI GGTGA 4 cut(s) 232, 425, 466, 563
Hpy166II GTNNAC 5 cut(s) 86, 223, 283, 409, 525
Hpy188I TCNGA 1 cut(s) 355
Hpy188III TCNNGA 3 cut(s) 254, 397, 583
Hpy8I GTNNAC 5 cut(s) 86, 223, 283, 409, 525
Hpy99I CGWCG 1 cut(s) 413
HpyAV CCTTC 3 cut(s) 451, 588, 594
HpyCH4III ACNGT 2 cut(s) 413, 466
HpyCH4IV ACGT 2 cut(s) 99, 285
HpyCH4V TGCA 4 cut(s) 4, 263, 274, 661
HpyF10VI GCNNNNNNNGC 5 cut(s) 373, 467, 506, 625, 637
HpySE526I ACGT 2 cut(s) 99, 285
Hsp92II CATG 5 cut(s) 22, 154, 263, 551, 567
Kpn2I TCCGGA 1 cut(s) 396
KroI GCCGGC 2 cut(s) 213, 440
KroNI GCCGGC 2 cut(s) 215, 442
Kzo9I GATC 2 cut(s) 234, 256
LmnI GCTCC 1 cut(s) 108
Lsp1109I GCAGC 4 cut(s) 16, 591, 615, 645
LweI GCATC 1 cut(s) 427
MaeI CTAG 1 cut(s) 558
MaeII ACGT 2 cut(s) 99, 285
MaeIII GTNAC 3 cut(s) 35, 379, 431
MalI GATC 2 cut(s) 236, 258
MboI GATC 2 cut(s) 234, 256
MboII GAAGA 1 cut(s) 116
MhlI GDGCHC 1 cut(s) 105
MluCI AATT 3 cut(s) 70, 130, 681
MnlI CCTC 7 cut(s) 57, 397, 415, 441, 505, 510, 555
MroI TCCGGA 1 cut(s) 396
MroNI GCCGGC 2 cut(s) 213, 440
MseI TTAA 1 cut(s) 684
MspI CCGG 6 cut(s) 175, 214, 218, 227, 397, 441
MspR9I CCNGG 3 cut(s) 176, 227, 228
MwoI GCNNNNNNNGC 5 cut(s) 373, 467, 506, 625, 637
NaeI GCCGGC 2 cut(s) 215, 442
NciI CCSGG 3 cut(s) 176, 227, 228
NdeII GATC 2 cut(s) 234, 256
NgoMIV GCCGGC 2 cut(s) 213, 440
NlaIII CATG 5 cut(s) 22, 154, 263, 551, 567
NlaIV GGNNCC 1 cut(s) 333
NmuCI GTSAC 1 cut(s) 379
NspI RCATGY 1 cut(s) 22
PcsI WCGNNNNNNNCGW 2 cut(s) 96, 441
PdiI GCCGGC 2 cut(s) 215, 442
PfeI GAWTC 2 cut(s) 554, 579
PflMI CCANNNNNTGG 1 cut(s) 686
PkrI GCNGC 4 cut(s) 6, 606, 630, 660
PmaCI CACGTG 1 cut(s) 286
PmlI CACGTG 1 cut(s) 286
Ppu21I YACGTR 2 cut(s) 100, 286
PshBI ATTAAT 1 cut(s) 684
PspCI CACGTG 1 cut(s) 286
PspN4I GGNNCC 1 cut(s) 333
PspPI GGNCC 3 cut(s) 268, 331, 638
PstI CTGCAG 1 cut(s) 663
RsaI GTAC 2 cut(s) 232, 371
RsaNI GTAC 2 cut(s) 231, 370
SalI GTCGAC 1 cut(s) 407
SaqAI TTAA 1 cut(s) 684
SatI GCNGC 4 cut(s) 5, 605, 629, 659
Sau3AI GATC 2 cut(s) 234, 256
Sau96I GGNCC 3 cut(s) 268, 331, 638
ScrFI CCNGG 3 cut(s) 176, 227, 228
SduI GDGCHC 1 cut(s) 105
SetI ASST 9 cut(s) 9, 51, 102, 198, 288, 312, 408, 426, 521
SfaNI GCATC 1 cut(s) 427
SfcI CTRYAG 1 cut(s) 659
SinI GGWCC 1 cut(s) 331
SmaI CCCGGG 1 cut(s) 228
Sse9I AATT 3 cut(s) 70, 130, 681
SsiI CCGC 2 cut(s) 374, 509
SspMI CTAG 1 cut(s) 558
StyD4I CCNGG 3 cut(s) 174, 225, 226
TaaI ACNGT 2 cut(s) 413, 466
TaiI ACGT 2 cut(s) 102, 288
TaqI TCGA 2 cut(s) 90, 408
TasI AATT 3 cut(s) 70, 130, 681
TfiI GAWTC 2 cut(s) 554, 579
Tru1I TTAA 1 cut(s) 684
Tru9I TTAA 1 cut(s) 684
TscAI CASTG 1 cut(s) 384
TseFI GTSAC 1 cut(s) 379
TseI GCWGC 4 cut(s) 4, 604, 628, 658
Tsp45I GTSAC 1 cut(s) 379
TspDTI ATGAA 3 cut(s) 170, 306, 552
TspGWI ACGGA 1 cut(s) 176
TspMI CCCGGG 1 cut(s) 226
TspRI CASTG 1 cut(s) 384
Van91I CCANNNNNTGG 1 cut(s) 686
VpaK11BI GGWCC 1 cut(s) 331
VspI ATTAAT 1 cut(s) 684
XceI RCATGY 1 cut(s) 22
XcmI CCANNNNNNNNNTGG 1 cut(s) 687
XmaI CCCGGG 1 cut(s) 226
XmiI GTMKAC 2 cut(s) 85, 408
XspI CTAG 1 cut(s) 558
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.