Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000163

Orthogroup ID

OG0004543

Physical Location & Seq

Genomic Coordinates Forward (+)

4493 .. 13556

Gene Structure 9064 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_163G00450830.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 687 bp

ATGCAGTGGGCATCACTTATGTTATCCATCTATGCTTACGTCTCCCTGGCGGCGCCAACCACTGGTGATCAGCAAGCTGGTCCTTCCACCGCGACCACTGGCCAGGCCACGAAGCAAAAAGTTGTGGTAGAGGAATCAGAAGTCGAGGACTCTTCCGACGACAAAGATCCTGCGGAGAAGGTTGGTTTAAGAACATGGTCCCACAAAAGTATAACCATTGCAACCCGGCTTGTTCGACCCTACTCATCAAGTCATGGGCCGAGACTCACCGGTACCCGTCGTACATCCACCTTCCTTCAACCGTTCAACGACTCATCGAACTCGCCACTCACTCGCGGACTCAACATTCACAACACAAACACAAAGTCATCACGCGCTTATTACAAAGCCAAGTCCATGGCGGTGCGGACCCCATTAGTCCCGAAGAAAATGGGCACAACCACTTTCAAATTTTCCAATGAAATGATCAAGCAAAGCCTCTTAGAAATCCACCAAACATGCCCTGTTACAACCCGGTTTGGTTTCCTGGCTGCACTCTTTTGGGCACACATTGCTTGCTTCAAGCACCCGAAAAGTGAAAGCAAGCACTCCCTCTCCATTAGTGTTGACCTTAGGAAGAAGCTCCCACTCTCTCATGGGCACTACGGCAATGCCTTGCATTTTTCGTTGCTTTCATTACCGATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Transferase

Protein Analysis

228

Amino Acids

25.24

Weight (kDa)

9.9

Isoelectric Point (pI)

46.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004543)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g03080 FvH4_6g03120
malus_domestica	MD12G1238900.v1.1
prunus_persica	Prupe.6G341800_v2.0.a1
pyrus_communis	pycom12g21960
rosa_chinensis	RchiOBHm_Chr3g0451351 RchiOBHm_Chr5g0046431 RchiOBHm_Chr5g0046531
rosa_laevigata	RLG00000025665 RLG00000025670
rosa_multiflora	Rmu_sc0002575.1_g000008 Rmu_sc0003878.1_g000045 Rmu_sc0003878.1_g000046 Rmu_sc0012229.1_g000007
rosa_roxburghii	Rroxscaffold_163G00450830 Rroxscaffold_164G00436560 Rroxscaffold_1G00034900 Rroxscaffold_3G00232570 Rroxscaffold_6G00428770
rosa_rugosa	Rorug02G0633200 Rorug05G0229400
rosa_samantha	Rh3AG036200 Rh3BG036700 Rh3CG035300 Rh3DG036200 Rh5AG309300 Rh5BG317500 Rh5BG318000 Rh5DG327800 Rh5DG328200
rosa_wichuraiana	Rw0G015940 Rw3G002670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	272
AccB1I	GGYRCC	2 cut(s)	52, 272
AccB7I	CCANNNNNTGG	1 cut(s)	62
AccII	CGCG	3 cut(s)	92, 336, 375
AciI	CCGC	6 cut(s)	50, 90, 173, 336, 401, 406
AclWI	GGATC	1 cut(s)	161
AcoI	YGGCCR	1 cut(s)	100
AcsI	RAATTY	1 cut(s)	449
AcyI	GRCGYC	1 cut(s)	53
AfaI	GTAC	2 cut(s)	274, 283
AfiI	CCNNNNNNNGG	1 cut(s)	62
AgeI	ACCGGT	1 cut(s)	269
AgsI	TTSAA	4 cut(s)	299, 307, 448, 562
AjnI	CCWGG	3 cut(s)	45, 102, 525
AluBI	AGCT	2 cut(s)	77, 622
AluI	AGCT	2 cut(s)	77, 622
Alw26I	GTCTC	2 cut(s)	46, 256
AlwI	GGATC	1 cut(s)	161
AoxI	GGCC	3 cut(s)	100, 105, 257
ApeKI	GCWGC	1 cut(s)	530
ApoI	RAATTY	1 cut(s)	449
ArsI	GACNNNNNNTTYG	2 cut(s)	350, 382
AsiGI	ACCGGT	1 cut(s)	269
Asp718I	GGTACC	1 cut(s)	272
AspLEI	GCGC	2 cut(s)	55, 377
AspS9I	GGNCC	4 cut(s)	80, 198, 257, 408
AsuC2I	CCSGG	2 cut(s)	226, 514
AsuHPI	GGTGA	2 cut(s)	77, 259
AvaII	GGWCC	3 cut(s)	80, 198, 408
AxyI	CCTNAGG	1 cut(s)	611
BaeGI	GKGCMC	3 cut(s)	437, 547, 642
BalI	TGGCCA	1 cut(s)	102
BanI	GGYRCC	2 cut(s)	52, 272
BbvI	GCAGC	1 cut(s)	517
BccI	CCATC	1 cut(s)	35
BceAI	ACGGC	1 cut(s)	661
BciT130I	CCWGG	3 cut(s)	47, 104, 527
BclI	TGATCA	2 cut(s)	67, 465
BcnI	CCSGG	2 cut(s)	226, 514
BcoDI	GTCTC	2 cut(s)	46, 256
BfoI	RGCGCY	1 cut(s)	56
BisI	GCNGC	2 cut(s)	51, 531
BlsI	GCNGC	2 cut(s)	52, 532
Bme1390I	CCNGG	5 cut(s)	47, 104, 226, 514, 527
Bme18I	GGWCC	3 cut(s)	80, 198, 408
BmgT120I	GGNCC	4 cut(s)	80, 198, 257, 408
BmiI	GGNNCC	4 cut(s)	54, 200, 274, 410
BmrFI	CCNGG	5 cut(s)	47, 104, 226, 514, 527
BmsI	GCATC	1 cut(s)	20
BpuMI	CCSGG	2 cut(s)	226, 514
BsaHI	GRCGYC	1 cut(s)	53
BsaJI	CCNNGG	2 cut(s)	45, 396
BsaWI	WCCGGW	1 cut(s)	269
BsaXI	ACNNNNNCTCC	2 cut(s)	578, 608
Bsc4I	CCNNNNNNNGG	1 cut(s)	62
Bse118I	RCCGGY	1 cut(s)	269
Bse1I	ACTGG	2 cut(s)	67, 103
Bse21I	CCTNAGG	1 cut(s)	611
Bse3DI	GCAATG	3 cut(s)	216, 549, 655
BseBI	CCWGG	3 cut(s)	47, 104, 527
BseDI	CCNNGG	2 cut(s)	45, 396
BseGI	GGATG	1 cut(s)	284
BseLI	CCNNNNNNNGG	1 cut(s)	62
BseMI	GCAATG	3 cut(s)	216, 549, 655
BseNI	ACTGG	2 cut(s)	67, 103
BseSI	GKGCMC	3 cut(s)	437, 547, 642
BseXI	GCAGC	1 cut(s)	517
BsgI	GTGCAG	1 cut(s)	516
Bsh1236I	CGCG	3 cut(s)	92, 336, 375
BshFI	GGCC	3 cut(s)	102, 107, 259
BshNI	GGYRCC	2 cut(s)	52, 272
BshTI	ACCGGT	1 cut(s)	269
BsiSI	CCGG	3 cut(s)	226, 270, 514
BslFI	GGGAC	2 cut(s)	184, 404
BslI	CCNNNNNNNGG	1 cut(s)	62
BsmAI	GTCTC	2 cut(s)	46, 256
BsmBI	CGTCTC	1 cut(s)	46
BsmFI	GGGAC	2 cut(s)	184, 404
BsnI	GGCC	3 cut(s)	102, 107, 259
Bsp1286I	GDGCHC	3 cut(s)	437, 547, 642
Bsp143I	GATC	3 cut(s)	67, 166, 465
Bsp19I	CCATGG	1 cut(s)	396
BspACI	CCGC	6 cut(s)	50, 90, 173, 336, 401, 406
BspANI	GGCC	3 cut(s)	102, 107, 259
BspFNI	CGCG	3 cut(s)	92, 336, 375
BspLI	GGNNCC	4 cut(s)	54, 200, 274, 410
BspPI	GGATC	1 cut(s)	161
BspT107I	GGYRCC	2 cut(s)	52, 272
BsrDI	GCAATG	3 cut(s)	216, 549, 655
BsrFI	RCCGGY	1 cut(s)	269
BsrI	ACTGG	2 cut(s)	67, 103
BssAI	RCCGGY	1 cut(s)	269
BssECI	CCNNGG	2 cut(s)	45, 396
BssMI	GATC	3 cut(s)	67, 166, 465
BssNI	GRCGYC	1 cut(s)	53
BssT1I	CCWWGG	1 cut(s)	396
Bst2UI	CCWGG	3 cut(s)	47, 104, 527
Bst4CI	ACNGT	1 cut(s)	303
Bst6I	CTCTTC	1 cut(s)	157
BstACI	GRCGYC	1 cut(s)	53
BstAPI	GCANNNNNTGC	1 cut(s)	551
BstC8I	GCNNGC	3 cut(s)	75, 556, 584
BstDEI	CTNAG	2 cut(s)	481, 611
BstDSI	CCRYGG	1 cut(s)	396
BstF5I	GGATG	1 cut(s)	284
BstFNI	CGCG	3 cut(s)	92, 336, 375
BstH2I	RGCGCY	1 cut(s)	56
BstHHI	GCGC	2 cut(s)	55, 377
BstKTI	GATC	3 cut(s)	70, 169, 468
BstMAI	GTCTC	2 cut(s)	46, 256
BstMBI	GATC	3 cut(s)	67, 166, 465
BstMWI	GCNNNNNNNGC	1 cut(s)	551
BstNI	CCWGG	3 cut(s)	47, 104, 527
BstNSI	RCATGY	1 cut(s)	501
BstSCI	CCNGG	5 cut(s)	45, 102, 224, 512, 525
BstSLI	GKGCMC	3 cut(s)	437, 547, 642
BstUI	CGCG	3 cut(s)	92, 336, 375
BstV1I	GCAGC	1 cut(s)	517
BstX2I	RGATCY	1 cut(s)	166
BstXI	CCANNNNNNTGG	1 cut(s)	397
BstYI	RGATCY	1 cut(s)	166
Bsu36I	CCTNAGG	1 cut(s)	611
BsuRI	GGCC	3 cut(s)	102, 107, 259
BtgI	CCRYGG	1 cut(s)	396
BtsCI	GGATG	1 cut(s)	284
BtsI	GCAGTG	1 cut(s)	11
BtsIMutI	CAGTG	3 cut(s)	11, 60, 96
Cac8I	GCNNGC	3 cut(s)	75, 556, 584
CfoI	GCGC	2 cut(s)	55, 377
Cfr10I	RCCGGY	1 cut(s)	269
Cfr13I	GGNCC	4 cut(s)	80, 198, 257, 408
Csp6I	GTAC	2 cut(s)	273, 282
CspAI	ACCGGT	1 cut(s)	269
CviAII	CATG	5 cut(s)	195, 254, 397, 498, 635
CviJI	RGCY	9 cut(s)	77, 102, 107, 229, 259, 389, 477, 530, 622
CviKI_1	RGCY	9 cut(s)	77, 102, 107, 229, 259, 389, 477, 530, 622
CviQI	GTAC	2 cut(s)	273, 282
DdeI	CTNAG	2 cut(s)	481, 611
DinI	GGCGCC	1 cut(s)	54
DpnI	GATC	3 cut(s)	69, 168, 467
DpnII	GATC	3 cut(s)	67, 166, 465
EaeI	YGGCCR	1 cut(s)	100
Eam1104I	CTCTTC	1 cut(s)	157
EarI	CTCTTC	1 cut(s)	157
Eco130I	CCWWGG	1 cut(s)	396
Eco47I	GGWCC	3 cut(s)	80, 198, 408
Eco81I	CCTNAGG	1 cut(s)	611
EcoRII	CCWGG	3 cut(s)	45, 102, 525
EcoT14I	CCWWGG	1 cut(s)	396
EgeI	GGCGCC	1 cut(s)	54
EheI	GGCGCC	1 cut(s)	54
ErhI	CCWWGG	1 cut(s)	396
Esp3I	CGTCTC	1 cut(s)	46
FaeI	CATG	5 cut(s)	198, 257, 400, 501, 638
FaiI	YATR	8 cut(s)	20, 33, 196, 212, 255, 398, 499, 636
FaqI	GGGAC	2 cut(s)	184, 404
FatI	CATG	5 cut(s)	194, 253, 396, 497, 634
FbaI	TGATCA	2 cut(s)	67, 465
Fnu4HI	GCNGC	2 cut(s)	51, 531
FokI	GGATG	1 cut(s)	271
Fsp4HI	GCNGC	2 cut(s)	51, 531
GlaI	GCGC	2 cut(s)	54, 376
GluI	GCNGC	2 cut(s)	51, 531
HaeII	RGCGCY	1 cut(s)	56
HaeIII	GGCC	3 cut(s)	102, 107, 259
HapII	CCGG	3 cut(s)	226, 270, 514
HhaI	GCGC	2 cut(s)	55, 377
Hin1I	GRCGYC	1 cut(s)	53
Hin1II	CATG	5 cut(s)	198, 257, 400, 501, 638
Hin6I	GCGC	2 cut(s)	53, 375
HinP1I	GCGC	2 cut(s)	53, 375
HincII	GTYRAC	1 cut(s)	607
HindII	GTYRAC	1 cut(s)	607
HinfI	GANTC	5 cut(s)	134, 149, 264, 311, 339
HpaII	CCGG	3 cut(s)	226, 270, 514
HphI	GGTGA	2 cut(s)	77, 259
Hpy166II	GTNNAC	1 cut(s)	607
Hpy188I	TCNGA	2 cut(s)	139, 157
Hpy188III	TCNNGA	1 cut(s)	421
Hpy8I	GTNNAC	1 cut(s)	607
Hpy99I	CGWCG	2 cut(s)	161, 282
HpyAV	CCTTC	4 cut(s)	93, 172, 301, 305
HpyCH4III	ACNGT	1 cut(s)	303
HpyCH4IV	ACGT	1 cut(s)	39
HpyCH4V	TGCA	4 cut(s)	4, 221, 533, 658
HpyF10VI	GCNNNNNNNGC	1 cut(s)	551
HpyF3I	CTNAG	2 cut(s)	481, 611
HpySE526I	ACGT	1 cut(s)	39
Hsp92I	GRCGYC	1 cut(s)	53
Hsp92II	CATG	5 cut(s)	198, 257, 400, 501, 638
HspAI	GCGC	2 cut(s)	53, 375
KasI	GGCGCC	1 cut(s)	52
KpnI	GGTACC	1 cut(s)	276
Ksp22I	TGATCA	2 cut(s)	67, 465
Kzo9I	GATC	3 cut(s)	67, 166, 465
LmnI	GCTCC	1 cut(s)	627
Lsp1109I	GCAGC	1 cut(s)	517
LweI	GCATC	1 cut(s)	20
MaeII	ACGT	1 cut(s)	39
MaeIII	GTNAC	1 cut(s)	505
MalI	GATC	3 cut(s)	69, 168, 467
MboI	GATC	3 cut(s)	67, 166, 465
MboII	GAAGA	3 cut(s)	144, 436, 628
MflI	RGATCY	1 cut(s)	166
MhlI	GDGCHC	3 cut(s)	437, 547, 642
MlsI	TGGCCA	1 cut(s)	102
MluCI	AATT	1 cut(s)	449
MluNI	TGGCCA	1 cut(s)	102
Mly113I	GGCGCC	1 cut(s)	53
MlyI	GAGTC	4 cut(s)	143, 258, 305, 333
MmeI	TCCRAC	1 cut(s)	180
MnlI	CCTC	4 cut(s)	124, 139, 488, 602
Mox20I	TGGCCA	1 cut(s)	102
MscI	TGGCCA	1 cut(s)	102
MseI	TTAA	1 cut(s)	188
MslI	CAYNNNNRTG	1 cut(s)	401
Msp20I	TGGCCA	1 cut(s)	102
MspI	CCGG	3 cut(s)	226, 270, 514
MspR9I	CCNGG	5 cut(s)	47, 104, 226, 514, 527
MvaI	CCWGG	3 cut(s)	47, 104, 527
MvnI	CGCG	3 cut(s)	92, 336, 375
MwoI	GCNNNNNNNGC	1 cut(s)	551
NarI	GGCGCC	1 cut(s)	53
NciI	CCSGG	2 cut(s)	226, 514
NcoI	CCATGG	1 cut(s)	396
NdeII	GATC	3 cut(s)	67, 166, 465
NlaIII	CATG	5 cut(s)	198, 257, 400, 501, 638
NlaIV	GGNNCC	4 cut(s)	54, 200, 274, 410
NmeAIII	GCCGAG	1 cut(s)	285
NspI	RCATGY	1 cut(s)	501
PfeI	GAWTC	1 cut(s)	134
PflMI	CCANNNNNTGG	1 cut(s)	62
PinAI	ACCGGT	1 cut(s)	269
PkrI	GCNGC	2 cut(s)	52, 532
PleI	GAGTC	4 cut(s)	143, 258, 305, 333
PluTI	GGCGCC	1 cut(s)	56
PpsI	GAGTC	4 cut(s)	143, 258, 305, 333
Psp6I	CCWGG	3 cut(s)	45, 102, 525
PspGI	CCWGG	3 cut(s)	45, 102, 525
PspN4I	GGNNCC	4 cut(s)	54, 200, 274, 410
PspPI	GGNCC	4 cut(s)	80, 198, 257, 408
PsuI	RGATCY	1 cut(s)	166
RsaI	GTAC	2 cut(s)	274, 283
RsaNI	GTAC	2 cut(s)	273, 282
RseI	CAYNNNNRTG	1 cut(s)	401
SaqAI	TTAA	1 cut(s)	188
SatI	GCNGC	2 cut(s)	51, 531
Sau3AI	GATC	3 cut(s)	67, 166, 465
Sau96I	GGNCC	4 cut(s)	80, 198, 257, 408
SchI	GAGTC	4 cut(s)	143, 258, 305, 333
ScrFI	CCNGG	5 cut(s)	47, 104, 226, 514, 527
SduI	GDGCHC	3 cut(s)	437, 547, 642
SetI	ASST	6 cut(s)	42, 79, 183, 293, 612, 624
SfaNI	GCATC	1 cut(s)	20
SfoI	GGCGCC	1 cut(s)	54
SinI	GGWCC	3 cut(s)	80, 198, 408
SmiMI	CAYNNNNRTG	1 cut(s)	401
Sse9I	AATT	1 cut(s)	449
SsiI	CCGC	6 cut(s)	50, 90, 173, 336, 401, 406
SspDI	GGCGCC	1 cut(s)	52
StyD4I	CCNGG	5 cut(s)	45, 102, 224, 512, 525
StyI	CCWWGG	1 cut(s)	396
TaaI	ACNGT	1 cut(s)	303
TaiI	ACGT	1 cut(s)	42
TaqI	TCGA	3 cut(s)	144, 235, 317
TasI	AATT	1 cut(s)	449
TauI	GCSGC	1 cut(s)	53
TfiI	GAWTC	1 cut(s)	134
Tru1I	TTAA	1 cut(s)	188
Tru9I	TTAA	1 cut(s)	188
TscAI	CASTG	2 cut(s)	67, 103
TseI	GCWGC	1 cut(s)	530
TspDTI	ATGAA	2 cut(s)	474, 663
TspRI	CASTG	2 cut(s)	67, 103
Van91I	CCANNNNNTGG	1 cut(s)	62
VpaK11BI	GGWCC	3 cut(s)	80, 198, 408
XapI	RAATTY	1 cut(s)	449
XceI	RCATGY	1 cut(s)	501

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.