Rh5BG318000

Transferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0004543
Physical Location & Seq
Reverse (-)
42405473 .. 42413761
8289 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG318000.1

Sequence Viewer

Length: 546 bp
ATGATGAAGCAGAACAAGAGCAACCGGGTGGCTGTCCGTTCAAAGCTAACGGCAGTATCCAGCCGGCCGGTGAACCCGGGTACGATCCATTCTTTCACGGGTCTGGATCATGCAATGGCCCTGCACAGCGTTCACGTGATATTCTACTACAAGGAGAAGCTGTTTTCATATTTTGACTTGGACCCGTTTAGGGTGTGTCTCTCGGAGACCCTATCGCTGTACCCGCCAGTGACGGGTAGGATAGTCCGGAGAGAGGTCGACGGTGAGTGGGAGGTCAAGTGTAACGATGCCGGCGTGAGGGTGGTGAAGGCCACGGTGGCGACAACACTTGATGAGTGGCTGGCAACTGCTGATGGGGCGGAGGAGAGGTTGTTGACGGCGTGGGATGATATGCCTCATGGTGATTCTAGTTCATGGTCGCCGTATAGAATCCAGTACACTTCGATTAAGCACAAAGTGCTTGTGAAGATCAACCACAGCCCAGAAAAAGCTATCTCTTCGAACCACAGGCTCCAGCTCGGACAAAGCCTGAAGGAGGAGAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Transferase

Protein Analysis

181

Amino Acids

20.51

Weight (kDa)

8.83

Isoelectric Point (pI)

43.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transferase PF02458 33 - 151 3.1e-14 Transferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 258
AccIII TCCGGA 1 cut(s) 246
AciI CCGC 2 cut(s) 224, 359
AclWI GGATC 2 cut(s) 79, 114
AcoI YGGCCR 1 cut(s) 65
AcvI CACGTG 1 cut(s) 136
AdeI CACNNNGTG 1 cut(s) 457
AfaI GTAC 3 cut(s) 82, 221, 437
AfiI CCNNNNNNNGG 5 cut(s) 190, 233, 253, 297, 535
AgsI TTSAA 1 cut(s) 42
AluBI AGCT 4 cut(s) 46, 160, 491, 517
AluI AGCT 4 cut(s) 46, 160, 491, 517
Alw26I GTCTC 2 cut(s) 200, 203
AlwI GGATC 2 cut(s) 79, 114
Ama87I CYCGRG 1 cut(s) 76
Aor13HI TCCGGA 1 cut(s) 246
AoxI GGCC 3 cut(s) 65, 117, 309
AspS9I GGNCC 2 cut(s) 118, 181
AsuC2I CCSGG 3 cut(s) 26, 77, 78
AsuHPI GGTGA 4 cut(s) 82, 275, 316, 413
AsuII TTCGAA 1 cut(s) 500
AvaI CYCGRG 1 cut(s) 76
AvaII GGWCC 1 cut(s) 181
BaeI ACNNNNGTAYC 2 cut(s) 39, 72
BbrPI CACGTG 1 cut(s) 136
BccI CCATC 1 cut(s) 347
BceAI ACGGC 3 cut(s) 66, 393, 406
BciVI GTATCC 1 cut(s) 67
BcnI CCSGG 3 cut(s) 26, 77, 78
BcoDI GTCTC 2 cut(s) 200, 203
BfaI CTAG 1 cut(s) 408
BfuI GTATCC 1 cut(s) 67
BglI GCCNNNNNGGC 1 cut(s) 317
Bme1390I CCNGG 3 cut(s) 26, 77, 78
Bme18I GGWCC 1 cut(s) 181
BmeT110I CYCGRG 1 cut(s) 76
BmgT120I GGNCC 2 cut(s) 118, 181
BmiI GGNNCC 2 cut(s) 183, 512
BmrFI CCNGG 3 cut(s) 26, 77, 78
BmsI GCATC 1 cut(s) 277
BpmI CTGGAG 1 cut(s) 497
Bpu14I TTCGAA 1 cut(s) 500
BpuMI CCSGG 3 cut(s) 26, 77, 78
BsaAI YACGTR 1 cut(s) 136
BsaI GGTCTC 1 cut(s) 200
BsaJI CCNNGG 2 cut(s) 76, 312
BsaWI WCCGGW 1 cut(s) 246
BsaXI ACNNNNNCTCC 9 cut(s) 146, 176, 263, 293, 353, 356, 383, 386, 527
Bsc4I CCNNNNNNNGG 5 cut(s) 190, 233, 253, 297, 535
Bse118I RCCGGY 3 cut(s) 63, 67, 290
Bse1I ACTGG 2 cut(s) 227, 433
Bse3DI GCAATG 1 cut(s) 120
BseAI TCCGGA 1 cut(s) 246
BseDI CCNNGG 2 cut(s) 76, 312
BseGI GGATG 1 cut(s) 391
BseLI CCNNNNNNNGG 5 cut(s) 190, 233, 253, 297, 535
BseMI GCAATG 1 cut(s) 120
BseNI ACTGG 2 cut(s) 227, 433
BseRI GAGGAG 1 cut(s) 377
BseX3I CGGCCG 1 cut(s) 65
BsgI GTGCAG 1 cut(s) 107
Bsh1285I CGRYCG 1 cut(s) 68
BshFI GGCC 3 cut(s) 67, 119, 311
BsiEI CGRYCG 1 cut(s) 68
BsiHKCI CYCGRG 1 cut(s) 76
BsiSI CCGG 6 cut(s) 25, 64, 68, 77, 247, 291
BslI CCNNNNNNNGG 5 cut(s) 190, 233, 253, 297, 535
BsmAI GTCTC 2 cut(s) 200, 203
BsnI GGCC 3 cut(s) 67, 119, 311
Bso31I GGTCTC 1 cut(s) 200
BsoBI CYCGRG 1 cut(s) 76
Bsp119I TTCGAA 1 cut(s) 500
Bsp13I TCCGGA 1 cut(s) 246
Bsp143I GATC 3 cut(s) 84, 106, 468
BspACI CCGC 2 cut(s) 224, 359
BspANI GGCC 3 cut(s) 67, 119, 311
BspEI TCCGGA 1 cut(s) 246
BspLI GGNNCC 2 cut(s) 183, 512
BspPI GGATC 2 cut(s) 79, 114
BspT104I TTCGAA 1 cut(s) 500
BspTNI GGTCTC 1 cut(s) 200
BsrDI GCAATG 1 cut(s) 120
BsrFI RCCGGY 3 cut(s) 63, 67, 290
BsrI ACTGG 2 cut(s) 227, 433
BssAI RCCGGY 3 cut(s) 63, 67, 290
BssECI CCNNGG 2 cut(s) 76, 312
BssMI GATC 3 cut(s) 84, 106, 468
Bst4CI ACNGT 2 cut(s) 263, 316
Bst6I CTCTTC 1 cut(s) 502
BstAPI GCANNNNNTGC 1 cut(s) 457
BstBAI YACGTR 1 cut(s) 136
BstBI TTCGAA 1 cut(s) 500
BstC8I GCNNGC 3 cut(s) 65, 292, 342
BstDSI CCRYGG 1 cut(s) 312
BstENI CCTNNNNNAGG 1 cut(s) 533
BstF5I GGATG 1 cut(s) 391
BstKTI GATC 3 cut(s) 87, 109, 471
BstMAI GTCTC 2 cut(s) 200, 203
BstMBI GATC 3 cut(s) 84, 106, 468
BstMCI CGRYCG 1 cut(s) 68
BstMWI GCNNNNNNNGC 4 cut(s) 223, 317, 356, 457
BstSCI CCNGG 3 cut(s) 24, 75, 76
BstZI CGGCCG 1 cut(s) 65
BsuI GTATCC 1 cut(s) 67
BsuRI GGCC 3 cut(s) 67, 119, 311
BtgI CCRYGG 1 cut(s) 312
BtsCI GGATG 1 cut(s) 391
BtsIMutI CAGTG 1 cut(s) 234
Cac8I GCNNGC 3 cut(s) 65, 292, 342
Cfr10I RCCGGY 3 cut(s) 63, 67, 290
Cfr13I GGNCC 2 cut(s) 118, 181
Cfr9I CCCGGG 1 cut(s) 76
Csp6I GTAC 3 cut(s) 81, 220, 436
CviAII CATG 3 cut(s) 110, 398, 414
CviQI GTAC 3 cut(s) 81, 220, 436
DpnI GATC 3 cut(s) 86, 108, 470
DpnII GATC 3 cut(s) 84, 106, 468
DraIII CACNNNGTG 1 cut(s) 457
EaeI YGGCCR 1 cut(s) 65
EagI CGGCCG 1 cut(s) 65
Eam1104I CTCTTC 1 cut(s) 502
EarI CTCTTC 1 cut(s) 502
EciI GGCGGA 1 cut(s) 374
EclXI CGGCCG 1 cut(s) 65
Eco31I GGTCTC 1 cut(s) 200
Eco47I GGWCC 1 cut(s) 181
Eco52I CGGCCG 1 cut(s) 65
Eco72I CACGTG 1 cut(s) 136
Eco88I CYCGRG 1 cut(s) 76
EcoNI CCTNNNNNAGG 1 cut(s) 533
FaeI CATG 3 cut(s) 113, 401, 417
FaiI YATR 6 cut(s) 111, 169, 392, 399, 415, 426
FatI CATG 3 cut(s) 109, 397, 413
FauI CCCGC 1 cut(s) 231
FblI GTMKAC 1 cut(s) 258
FokI GGATG 1 cut(s) 398
FspBI CTAG 1 cut(s) 408
GsuI CTGGAG 1 cut(s) 497
HaeIII GGCC 3 cut(s) 67, 119, 311
HapII CCGG 6 cut(s) 25, 64, 68, 77, 247, 291
Hin1II CATG 3 cut(s) 113, 401, 417
HincII GTYRAC 2 cut(s) 259, 375
HindII GTYRAC 2 cut(s) 259, 375
HinfI GANTC 2 cut(s) 404, 429
HpaII CCGG 6 cut(s) 25, 64, 68, 77, 247, 291
HphI GGTGA 4 cut(s) 82, 275, 316, 413
Hpy166II GTNNAC 5 cut(s) 73, 133, 259, 375, 438
Hpy188I TCNGA 2 cut(s) 205, 521
Hpy188III TCNNGA 2 cut(s) 104, 247
Hpy8I GTNNAC 5 cut(s) 73, 133, 259, 375, 438
Hpy99I CGWCG 1 cut(s) 263
HpyAV CCTTC 2 cut(s) 301, 526
HpyCH4III ACNGT 2 cut(s) 263, 316
HpyCH4IV ACGT 1 cut(s) 135
HpyCH4V TGCA 2 cut(s) 113, 124
HpyF10VI GCNNNNNNNGC 4 cut(s) 223, 317, 356, 457
HpySE526I ACGT 1 cut(s) 135
Hsp92II CATG 3 cut(s) 113, 401, 417
Kpn2I TCCGGA 1 cut(s) 246
KroI GCCGGC 2 cut(s) 63, 290
KroNI GCCGGC 2 cut(s) 65, 292
Kzo9I GATC 3 cut(s) 84, 106, 468
LmnI GCTCC 1 cut(s) 516
LweI GCATC 1 cut(s) 277
MaeI CTAG 1 cut(s) 408
MaeII ACGT 1 cut(s) 135
MaeIII GTNAC 2 cut(s) 229, 281
MalI GATC 3 cut(s) 86, 108, 470
MboI GATC 3 cut(s) 84, 106, 468
MboII GAAGA 2 cut(s) 478, 489
MnlI CCTC 7 cut(s) 247, 265, 291, 355, 360, 405, 529
MroI TCCGGA 1 cut(s) 246
MroNI GCCGGC 2 cut(s) 63, 290
MseI TTAA 1 cut(s) 447
MspI CCGG 6 cut(s) 25, 64, 68, 77, 247, 291
MspR9I CCNGG 3 cut(s) 26, 77, 78
MwoI GCNNNNNNNGC 4 cut(s) 223, 317, 356, 457
NaeI GCCGGC 2 cut(s) 65, 292
NciI CCSGG 3 cut(s) 26, 77, 78
NdeII GATC 3 cut(s) 84, 106, 468
NgoMIV GCCGGC 2 cut(s) 63, 290
NlaIII CATG 3 cut(s) 113, 401, 417
NlaIV GGNNCC 2 cut(s) 183, 512
NmuCI GTSAC 1 cut(s) 229
NspV TTCGAA 1 cut(s) 500
PcsI WCGNNNNNNNCGW 1 cut(s) 291
PdiI GCCGGC 2 cut(s) 65, 292
PfeI GAWTC 2 cut(s) 404, 429
PmaCI CACGTG 1 cut(s) 136
PmlI CACGTG 1 cut(s) 136
Ppu21I YACGTR 1 cut(s) 136
PspCI CACGTG 1 cut(s) 136
PspN4I GGNNCC 2 cut(s) 183, 512
PspPI GGNCC 2 cut(s) 118, 181
RsaI GTAC 3 cut(s) 82, 221, 437
RsaNI GTAC 3 cut(s) 81, 220, 436
SalI GTCGAC 1 cut(s) 257
SaqAI TTAA 1 cut(s) 447
Sau3AI GATC 3 cut(s) 84, 106, 468
Sau96I GGNCC 2 cut(s) 118, 181
ScrFI CCNGG 3 cut(s) 26, 77, 78
SetI ASST 8 cut(s) 48, 138, 162, 258, 276, 371, 493, 519
SfaNI GCATC 1 cut(s) 277
SfuI TTCGAA 1 cut(s) 500
SinI GGWCC 1 cut(s) 181
SmaI CCCGGG 1 cut(s) 78
SsiI CCGC 2 cut(s) 224, 359
SspMI CTAG 1 cut(s) 408
StyD4I CCNGG 3 cut(s) 24, 75, 76
TaaI ACNGT 2 cut(s) 263, 316
TaiI ACGT 1 cut(s) 138
TaqI TCGA 3 cut(s) 258, 443, 500
TatI WGTACW 1 cut(s) 435
TfiI GAWTC 2 cut(s) 404, 429
Tru1I TTAA 1 cut(s) 447
Tru9I TTAA 1 cut(s) 447
TscAI CASTG 1 cut(s) 234
TseFI GTSAC 1 cut(s) 229
Tsp45I GTSAC 1 cut(s) 229
TspDTI ATGAA 3 cut(s) 20, 156, 402
TspGWI ACGGA 1 cut(s) 26
TspMI CCCGGG 1 cut(s) 76
TspRI CASTG 1 cut(s) 234
VpaK11BI GGWCC 1 cut(s) 181
XagI CCTNNNNNAGG 1 cut(s) 533
XmaI CCCGGG 1 cut(s) 76
XmiI GTMKAC 1 cut(s) 258
XspI CTAG 1 cut(s) 408
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.