Rw3G002670

Transferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
OG0004543
Physical Location & Seq
Reverse (-)
2323098 .. 2329236
6139 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G002670.1

Sequence Viewer

Length: 1404 bp
ATGATGAAGCAGAACCAGAGCAACCGGGTGGCTGTCCGGTCAAAGCTAACGGCAGTATCCAGCAGGCCGGTGAACCCGGGTACGATCCATTCTTTCACGGGTCTGGACCATGCAATGGCCCTGCACAGCGTTCACGTGATATTCTACTACAAGGAGAAGCTGTTTTCATATTTTGACTTGGACCCGTTTCGGGTGTGTCTCTCGGAGATCCTATCACTGTACCCGCCGGTGACGGGTAGGATAGTCCGGAGAGAGGTCGACGGTGAGTGGGAGGTCAAGTGTAACGATGCCGGTGTTAGGGTGGTGAAGGCCACGGTGGCGACAACACTTGATGAGTGGCTGGGATCTGCTGATGGGGCGGAGGAGAGGTTGTTGACGGCGTGGGATGATATGCCTCATGATGATCCTAGTTCATGGTCGCCGTATAGAATCCAGATAAACGAATTTGAAGGAGGAGGAGTAGCCATTGGACTAAGTTGCTCTCACATGCAAGCAGACCCAACTTGTGCGACCCTACTCATCAAGTCATGGGCCGAGACTCACCGTCGGGAACCCGTCGTACACCCGCCTTCCTTTGATGACTTATTGGACTCGCCACTCACTCGCGGACTCAACATTCACAACACAAACACAAAGTCATCATGCTCTTATTACGAAGCCAAGTCCATGGCAGCACAGACCCCATTAGTACTGAAGAAAATGGGCACAGCCACTTTCAAATTTTCCAATGAAGTGATCAAGCAAAGCCTCTTAGAAATCCACCAAACATGCCATGTTGCAACCCCGTTTGATTTGATGGCCGCACTCTTTTGGGCAAGCATTGCTCGCTTGAAGCACCCAAAAAGTGAAAGCAAGCACTCCCTCTCCATTTGTGTTGACTTCAGGAAGAAGCTGCAGCTCTCTTTTGGGCACTATGGCAATGCCTTGCATTTTTCGTTGCTTTCATTACCTGATGTGGAAGAAAAGGAAGACTTGGGAGATGTGGTCGGAGCCGTGCATCGCCATGTGTCGAGTCAGGGGGAGGGAGAGTTTTGGTCTGCTTTAGACTGGTTTGAATCAAGAAAGGAAGAGGGAGGTCAGTTTGGGGCACCTTTTAGAATGTATGGCCCTGAGTTGACATGTATGAGCATGGAGCATATGGTTGACTTTCCTGGGATTACTAGGAATAAGCCGTTGATGTATACAGCTGTGTTTGATAAGGAGAACAGGCCCGTACACGTGTCATATCATGTTGGAAATGTGGAAGGGGAAGGTTTGATAATGGTGATGCCATCTCCGGAAGGAGGCCTGGCGAGGATGGTTACGGTGACATTGCCGGAGGAGGAACTAGAGCAGTTATGTCAGGATGAAGCTATTTTGAGCTTAAACCCAATAATGGTCATAAGTGGGACGAGAAAAGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Transferase

Protein Analysis

467

Amino Acids

52.17

Weight (kDa)

5.79

Isoelectric Point (pI)

45.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transferase PF02458 34 - 449 2.4e-39 Transferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1087
AccB7I CCANNNNNTGG 1 cut(s) 115
AccI GTMKAC 2 cut(s) 258, 1181
AccII CGCG 1 cut(s) 606
AccIII TCCGGA 2 cut(s) 246, 1276
AciI CCGC 5 cut(s) 224, 359, 566, 606, 801
AclWI GGATC 4 cut(s) 79, 202, 352, 398
AcoI YGGCCR 1 cut(s) 798
AcsI RAATTY 2 cut(s) 443, 719
AcuI CTGAAG 2 cut(s) 713, 865
AcvI CACGTG 2 cut(s) 136, 1219
AfaI GTAC 5 cut(s) 82, 221, 561, 690, 1215
AfiI CCNNNNNNNGG 7 cut(s) 115, 190, 233, 253, 297, 1283, 1375
AflIII ACRYGT 3 cut(s) 1118, 1216, 1218
AgsI TTSAA 4 cut(s) 449, 718, 832, 1055
AhdI GACNNNNNGTC 1 cut(s) 543
AjnI CCWGG 2 cut(s) 1150, 1287
AluBI AGCT 7 cut(s) 46, 160, 892, 898, 1187, 1352, 1362
AluI AGCT 7 cut(s) 46, 160, 892, 898, 1187, 1352, 1362
Alw26I GTCTC 2 cut(s) 203, 530
AlwI GGATC 4 cut(s) 79, 202, 352, 398
Ama87I CYCGRG 1 cut(s) 76
Aor13HI TCCGGA 2 cut(s) 246, 1276
AoxI GGCC 8 cut(s) 65, 117, 309, 531, 798, 1105, 1208, 1285
ApeKI GCWGC 3 cut(s) 671, 892, 895
ApoI RAATTY 2 cut(s) 443, 719
ArsI GACNNNNNNTTYG 2 cut(s) 620, 652
AspS9I GGNCC 6 cut(s) 106, 118, 181, 531, 1106, 1209
AsuC2I CCSGG 3 cut(s) 26, 77, 78
AsuHPI GGTGA 7 cut(s) 82, 241, 275, 316, 533, 1276, 1318
AvaI CYCGRG 1 cut(s) 76
AvaII GGWCC 2 cut(s) 106, 181
BaeGI GKGCMC 3 cut(s) 707, 912, 1090
BaeI ACNNNNGTAYC 2 cut(s) 39, 72
BanI GGYRCC 1 cut(s) 1087
BbrPI CACGTG 2 cut(s) 136, 1219
BbsI GAAGAC 1 cut(s) 975
BbvI GCAGC 3 cut(s) 683, 879, 907
BccI CCATC 4 cut(s) 347, 790, 1279, 1291
BceAI ACGGC 5 cut(s) 66, 393, 406, 977, 1156
BciT130I CCWGG 2 cut(s) 1152, 1289
BciVI GTATCC 1 cut(s) 67
BclI TGATCA 1 cut(s) 735
BcnI CCSGG 3 cut(s) 26, 77, 78
BcoDI GTCTC 2 cut(s) 203, 530
BfaI CTAG 3 cut(s) 408, 1161, 1328
BfmI CTRYAG 1 cut(s) 893
BfuI GTATCC 1 cut(s) 67
BglI GCCNNNNNGGC 1 cut(s) 317
BisI GCNGC 4 cut(s) 672, 801, 893, 896
BlsI GCNGC 4 cut(s) 673, 802, 894, 897
BmcAI AGTACT 1 cut(s) 690
Bme1390I CCNGG 5 cut(s) 26, 77, 78, 1152, 1289
Bme18I GGWCC 2 cut(s) 106, 181
BmeRI GACNNNNNGTC 1 cut(s) 543
BmeT110I CYCGRG 1 cut(s) 76
BmgT120I GGNCC 6 cut(s) 106, 118, 181, 531, 1106, 1209
BmiI GGNNCC 4 cut(s) 183, 552, 991, 1089
BmrFI CCNGG 5 cut(s) 26, 77, 78, 1152, 1289
BmsI GCATC 3 cut(s) 277, 1006, 1257
BpiI GAAGAC 1 cut(s) 975
BpuMI CCSGG 3 cut(s) 26, 77, 78
BsaAI YACGTR 2 cut(s) 136, 1219
BsaJI CCNNGG 4 cut(s) 76, 312, 666, 1151
BsaWI WCCGGW 3 cut(s) 36, 246, 1276
Bsc4I CCNNNNNNNGG 7 cut(s) 115, 190, 233, 253, 297, 1283, 1375
Bse118I RCCGGY 3 cut(s) 67, 226, 290
Bse1I ACTGG 1 cut(s) 1052
Bse3DI GCAATG 4 cut(s) 120, 819, 925, 1310
BseAI TCCGGA 2 cut(s) 246, 1276
BseBI CCWGG 2 cut(s) 1152, 1289
BseDI CCNNGG 4 cut(s) 76, 312, 666, 1151
BseGI GGATG 3 cut(s) 391, 1302, 1351
BseLI CCNNNNNNNGG 7 cut(s) 115, 190, 233, 253, 297, 1283, 1375
BseMI GCAATG 4 cut(s) 120, 819, 925, 1310
BseMII CTCAG 1 cut(s) 1101
BseNI ACTGG 1 cut(s) 1052
BseRI GAGGAG 4 cut(s) 377, 468, 471, 1334
BseSI GKGCMC 3 cut(s) 707, 912, 1090
BseXI GCAGC 3 cut(s) 683, 879, 907
BseYI CCCAGC 1 cut(s) 340
BsgI GTGCAG 1 cut(s) 107
Bsh1236I CGCG 1 cut(s) 606
BshFI GGCC 8 cut(s) 67, 119, 311, 533, 800, 1107, 1210, 1287
BshNI GGYRCC 1 cut(s) 1087
BsiHKCI CYCGRG 1 cut(s) 76
BsiSI CCGG 9 cut(s) 25, 37, 68, 77, 227, 247, 291, 1277, 1316
BslI CCNNNNNNNGG 7 cut(s) 115, 190, 233, 253, 297, 1283, 1375
BsmAI GTCTC 2 cut(s) 203, 530
BsnI GGCC 8 cut(s) 67, 119, 311, 533, 800, 1107, 1210, 1287
BsoBI CYCGRG 1 cut(s) 76
Bsp1286I GDGCHC 3 cut(s) 707, 912, 1090
Bsp13I TCCGGA 2 cut(s) 246, 1276
Bsp143I GATC 5 cut(s) 84, 207, 344, 403, 735
Bsp19I CCATGG 1 cut(s) 666
BspACI CCGC 5 cut(s) 224, 359, 566, 606, 801
BspANI GGCC 8 cut(s) 67, 119, 311, 533, 800, 1107, 1210, 1287
BspCNI CTCAG 1 cut(s) 1102
BspEI TCCGGA 2 cut(s) 246, 1276
BspFNI CGCG 1 cut(s) 606
BspHI TCATGA 1 cut(s) 397
BspLI GGNNCC 4 cut(s) 183, 552, 991, 1089
BspMAI CTGCAG 1 cut(s) 897
BspPI GGATC 4 cut(s) 79, 202, 352, 398
BspT107I GGYRCC 1 cut(s) 1087
BsrDI GCAATG 4 cut(s) 120, 819, 925, 1310
BsrFI RCCGGY 3 cut(s) 67, 226, 290
BsrI ACTGG 1 cut(s) 1052
BssAI RCCGGY 3 cut(s) 67, 226, 290
BssECI CCNNGG 4 cut(s) 76, 312, 666, 1151
BssMI GATC 5 cut(s) 84, 207, 344, 403, 735
BssNAI GTATAC 1 cut(s) 1182
BssT1I CCWWGG 1 cut(s) 666
Bst1107I GTATAC 1 cut(s) 1182
Bst2UI CCWGG 2 cut(s) 1152, 1289
Bst4CI ACNGT 5 cut(s) 219, 263, 316, 545, 1306
Bst6I CTCTTC 1 cut(s) 1062
BstAPI GCANNNNNTGC 1 cut(s) 821
BstBAI YACGTR 2 cut(s) 136, 1219
BstC8I GCNNGC 5 cut(s) 65, 492, 817, 826, 854
BstDEI CTNAG 3 cut(s) 473, 751, 1110
BstDSI CCRYGG 2 cut(s) 312, 666
BstF5I GGATG 3 cut(s) 391, 1302, 1351
BstFNI CGCG 1 cut(s) 606
BstKTI GATC 5 cut(s) 87, 210, 347, 406, 738
BstMAI GTCTC 2 cut(s) 203, 530
BstMBI GATC 5 cut(s) 84, 207, 344, 403, 735
BstMWI GCNNNNNNNGC 4 cut(s) 317, 356, 821, 825
BstNI CCWGG 2 cut(s) 1152, 1289
BstNSI RCATGY 3 cut(s) 490, 771, 1122
BstSCI CCNGG 5 cut(s) 24, 75, 76, 1150, 1287
BstSFI CTRYAG 1 cut(s) 893
BstSLI GKGCMC 3 cut(s) 707, 912, 1090
BstUI CGCG 1 cut(s) 606
BstV1I GCAGC 3 cut(s) 683, 879, 907
BstV2I GAAGAC 1 cut(s) 975
BstX2I RGATCY 2 cut(s) 207, 344
BstXI CCANNNNNNTGG 1 cut(s) 667
BstYI RGATCY 2 cut(s) 207, 344
BstZ17I GTATAC 1 cut(s) 1182
BsuI GTATCC 1 cut(s) 67
BsuRI GGCC 8 cut(s) 67, 119, 311, 533, 800, 1107, 1210, 1287
BtgI CCRYGG 2 cut(s) 312, 666
BtgZI GCGATG 1 cut(s) 983
BtsCI GGATG 3 cut(s) 391, 1302, 1351
BtsIMutI CAGTG 1 cut(s) 215
Cac8I GCNNGC 5 cut(s) 65, 492, 817, 826, 854
CciI TCATGA 1 cut(s) 397
Cfr10I RCCGGY 3 cut(s) 67, 226, 290
Cfr13I GGNCC 6 cut(s) 106, 118, 181, 531, 1106, 1209
Cfr9I CCCGGG 1 cut(s) 76
Csp6I GTAC 5 cut(s) 81, 220, 560, 689, 1214
CviQI GTAC 5 cut(s) 81, 220, 560, 689, 1214
DdeI CTNAG 3 cut(s) 473, 751, 1110
DpnI GATC 5 cut(s) 86, 209, 346, 405, 737
DpnII GATC 5 cut(s) 84, 207, 344, 403, 735
DriI GACNNNNNGTC 1 cut(s) 543
EaeI YGGCCR 1 cut(s) 798
Eam1104I CTCTTC 1 cut(s) 1062
Eam1105I GACNNNNNGTC 1 cut(s) 543
EarI CTCTTC 1 cut(s) 1062
EciI GGCGGA 1 cut(s) 374
Eco130I CCWWGG 1 cut(s) 666
Eco147I AGGCCT 1 cut(s) 1287
Eco47I GGWCC 2 cut(s) 106, 181
Eco57I CTGAAG 2 cut(s) 713, 865
Eco72I CACGTG 2 cut(s) 136, 1219
Eco88I CYCGRG 1 cut(s) 76
EcoRII CCWGG 2 cut(s) 1150, 1287
EcoT14I CCWWGG 1 cut(s) 666
ErhI CCWWGG 1 cut(s) 666
FalI AAGNNNNNCTT 2 cut(s) 956, 988
FauI CCCGC 2 cut(s) 231, 573
FauNDI CATATG 1 cut(s) 1137
FbaI TGATCA 1 cut(s) 735
FblI GTMKAC 2 cut(s) 258, 1181
Fnu4HI GCNGC 4 cut(s) 672, 801, 893, 896
FokI GGATG 3 cut(s) 398, 1309, 1358
Fsp4HI GCNGC 4 cut(s) 672, 801, 893, 896
FspBI CTAG 3 cut(s) 408, 1161, 1328
GluI GCNGC 4 cut(s) 672, 801, 893, 896
GsaI CCCAGC 1 cut(s) 344
HaeIII GGCC 8 cut(s) 67, 119, 311, 533, 800, 1107, 1210, 1287
HapII CCGG 9 cut(s) 25, 37, 68, 77, 227, 247, 291, 1277, 1316
HincII GTYRAC 5 cut(s) 259, 375, 877, 1116, 1144
HindII GTYRAC 5 cut(s) 259, 375, 877, 1116, 1144
HinfI GANTC 6 cut(s) 429, 538, 590, 609, 1012, 1055
HpaII CCGG 9 cut(s) 25, 37, 68, 77, 227, 247, 291, 1277, 1316
HphI GGTGA 7 cut(s) 82, 241, 275, 316, 533, 1276, 1318
Hpy188I TCNGA 2 cut(s) 205, 989
Hpy188III TCNNGA 9 cut(s) 104, 247, 398, 433, 548, 883, 1059, 1277, 1343
Hpy99I CGWCG 3 cut(s) 263, 549, 560
HpyAV CCTTC 6 cut(s) 301, 443, 579, 1238, 1244, 1274
HpyCH4III ACNGT 5 cut(s) 219, 263, 316, 545, 1306
HpyCH4IV ACGT 2 cut(s) 135, 1218
HpyCH4V TGCA 7 cut(s) 113, 124, 490, 779, 895, 928, 997
HpyF10VI GCNNNNNNNGC 4 cut(s) 317, 356, 821, 825
HpyF3I CTNAG 3 cut(s) 473, 751, 1110
HpySE526I ACGT 2 cut(s) 135, 1218
Kpn2I TCCGGA 2 cut(s) 246, 1276
Ksp22I TGATCA 1 cut(s) 735
Kzo9I GATC 5 cut(s) 84, 207, 344, 403, 735
LmnI GCTCC 2 cut(s) 989, 1132
Lsp1109I GCAGC 3 cut(s) 683, 879, 907
LweI GCATC 3 cut(s) 277, 1006, 1257
MaeI CTAG 3 cut(s) 408, 1161, 1328
MaeII ACGT 2 cut(s) 135, 1218
MaeIII GTNAC 4 cut(s) 229, 281, 1300, 1306
MalI GATC 5 cut(s) 86, 209, 346, 405, 737
MboI GATC 5 cut(s) 84, 207, 344, 403, 735
MboII GAAGA 5 cut(s) 706, 898, 971, 980, 1079
MflI RGATCY 2 cut(s) 207, 344
MhlI GDGCHC 3 cut(s) 707, 912, 1090
MluCI AATT 2 cut(s) 443, 719
MlyI GAGTC 4 cut(s) 532, 584, 603, 1021
MmeI TCCRAC 2 cut(s) 967, 1213
MroI TCCGGA 2 cut(s) 246, 1276
MseI TTAA 1 cut(s) 1364
MslI CAYNNNNRTG 1 cut(s) 1002
MspA1I CMGCKG 1 cut(s) 1187
MspI CCGG 9 cut(s) 25, 37, 68, 77, 227, 247, 291, 1277, 1316
MspR9I CCNGG 5 cut(s) 26, 77, 78, 1152, 1289
MvaI CCWGG 2 cut(s) 1152, 1289
MvnI CGCG 1 cut(s) 606
MwoI GCNNNNNNNGC 4 cut(s) 317, 356, 821, 825
NciI CCSGG 3 cut(s) 26, 77, 78
NcoI CCATGG 1 cut(s) 666
NdeI CATATG 1 cut(s) 1137
NdeII GATC 5 cut(s) 84, 207, 344, 403, 735
NlaIV GGNNCC 4 cut(s) 183, 552, 991, 1089
NmeAIII GCCGAG 1 cut(s) 559
NmuCI GTSAC 2 cut(s) 229, 1306
NspI RCATGY 3 cut(s) 490, 771, 1122
PagI TCATGA 1 cut(s) 397
PceI AGGCCT 1 cut(s) 1287
PciI ACATGT 1 cut(s) 1118
PfeI GAWTC 2 cut(s) 429, 1055
PflMI CCANNNNNTGG 1 cut(s) 115
PkrI GCNGC 4 cut(s) 673, 802, 894, 897
PleI GAGTC 4 cut(s) 532, 584, 603, 1020
PmaCI CACGTG 2 cut(s) 136, 1219
PmlI CACGTG 2 cut(s) 136, 1219
PpsI GAGTC 4 cut(s) 532, 584, 603, 1020
Ppu21I YACGTR 2 cut(s) 136, 1219
PscI ACATGT 1 cut(s) 1118
Psp6I CCWGG 2 cut(s) 1150, 1287
PspCI CACGTG 2 cut(s) 136, 1219
PspFI CCCAGC 1 cut(s) 340
PspGI CCWGG 2 cut(s) 1150, 1287
PspN4I GGNNCC 4 cut(s) 183, 552, 991, 1089
PspPI GGNCC 6 cut(s) 106, 118, 181, 531, 1106, 1209
PsrI GAACNNNNNNTAC 2 cut(s) 543, 575
PstI CTGCAG 1 cut(s) 897
PsuI RGATCY 2 cut(s) 207, 344
PvuII CAGCTG 1 cut(s) 1187
RsaI GTAC 5 cut(s) 82, 221, 561, 690, 1215
RsaNI GTAC 5 cut(s) 81, 220, 560, 689, 1214
RseI CAYNNNNRTG 1 cut(s) 1002
SalI GTCGAC 1 cut(s) 257
SaqAI TTAA 1 cut(s) 1364
SatI GCNGC 4 cut(s) 672, 801, 893, 896
Sau3AI GATC 5 cut(s) 84, 207, 344, 403, 735
Sau96I GGNCC 6 cut(s) 106, 118, 181, 531, 1106, 1209
ScaI AGTACT 1 cut(s) 690
SchI GAGTC 4 cut(s) 532, 584, 603, 1021
ScrFI CCNGG 5 cut(s) 26, 77, 78, 1152, 1289
SduI GDGCHC 3 cut(s) 707, 912, 1090
SfaNI GCATC 3 cut(s) 277, 1006, 1257
SfcI CTRYAG 1 cut(s) 893
SgrAI CRCCGGYG 1 cut(s) 226
SinI GGWCC 2 cut(s) 106, 181
SmaI CCCGGG 1 cut(s) 78
SmiMI CAYNNNNRTG 1 cut(s) 1002
Sse9I AATT 2 cut(s) 443, 719
SseBI AGGCCT 1 cut(s) 1287
SsiI CCGC 5 cut(s) 224, 359, 566, 606, 801
SspMI CTAG 3 cut(s) 408, 1161, 1328
StuI AGGCCT 1 cut(s) 1287
StyD4I CCNGG 5 cut(s) 24, 75, 76, 1150, 1287
StyI CCWWGG 1 cut(s) 666
TaaI ACNGT 5 cut(s) 219, 263, 316, 545, 1306
TaiI ACGT 2 cut(s) 138, 1221
TaqI TCGA 2 cut(s) 258, 1010
TasI AATT 2 cut(s) 443, 719
TatI WGTACW 1 cut(s) 688
TauI GCSGC 1 cut(s) 803
TfiI GAWTC 2 cut(s) 429, 1055
Tru1I TTAA 1 cut(s) 1364
Tru9I TTAA 1 cut(s) 1364
TscAI CASTG 1 cut(s) 222
TseFI GTSAC 2 cut(s) 229, 1306
TseI GCWGC 3 cut(s) 671, 892, 895
Tsp45I GTSAC 2 cut(s) 229, 1306
TspDTI ATGAA 6 cut(s) 20, 156, 402, 744, 933, 1362
TspMI CCCGGG 1 cut(s) 76
TspRI CASTG 1 cut(s) 222
Van91I CCANNNNNTGG 1 cut(s) 115
VpaK11BI GGWCC 2 cut(s) 106, 181
XapI RAATTY 2 cut(s) 443, 719
XceI RCATGY 3 cut(s) 490, 771, 1122
XmaI CCCGGG 1 cut(s) 76
XmiI GTMKAC 2 cut(s) 258, 1181
XspI CTAG 3 cut(s) 408, 1161, 1328
ZrmI AGTACT 1 cut(s) 690
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.