Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002575.1

Orthogroup ID

OG0004543

Physical Location & Seq

Genomic Coordinates Forward (+)

44385 .. 45362

Gene Structure 978 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002575.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 978 bp

atggagcagataaacgaatttgaaggaggaggagtagccattggactaagttgctctcacatgcaagcagacccaacttgtgcgaccctactcatcaagtcatgggccgagactcaccgtcgggaacccatcgtacacccgccttcctttgatgacttattggactcgccactcactcgcggattcaacattcacaacacaaacacaaagtcatcatgctcttattacgaagccaagtccatggcagcacataccccattagtactgaagaaaatgggcacagccactttcaaattttccaatgaagtgatcaagcaaagcctcttagaaatccaccaaacatgccatgttgcaaccccgtttgatttgatggccgcactcttttgggcacgcattgctcgcttgaagcacccaaaaagtgaaagcaagcactccctctccatttgtgtcaacttcaggaagaagctgcagctctcttttgggcactatggcaatgccttgcatttttcgttgctttcattacctgatgtggaagaaaaggaagacttgggagatgtggtcggagccgtgcatcgccatgtgtcgagtcagggggagggagagttttggtctgctttagactggtttgaatcaagaaaggaagagggaggtcagtttggggcaccttttagaatgtatggccctgagttgacatgtatgagcatggagcatatggttgactttcctggaattactaggaataagccgttgatgtatacagctgtgtttgataaggagaacaggcccgtacacgtgtcctatcatgttggaaatgtggaaggggaaggtttgataatggtgatgccatctccggaaggaggcctggcgaggatggttacggtgacattgccggaggaggaactagagcagttatgtcaggatgaagctattttgagcttaaacccaataatggtcataagtgggacgagaaaagcataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Transferase

Protein Analysis

325

Amino Acids

36.26

Weight (kDa)

5.88

Isoelectric Point (pI)

45.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004543)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g03080 FvH4_6g03120
malus_domestica	MD12G1238900.v1.1
prunus_persica	Prupe.6G341800_v2.0.a1
pyrus_communis	pycom12g21960
rosa_chinensis	RchiOBHm_Chr3g0451351 RchiOBHm_Chr5g0046431 RchiOBHm_Chr5g0046531
rosa_laevigata	RLG00000025665 RLG00000025670
rosa_multiflora	Rmu_sc0002575.1_g000008 Rmu_sc0003878.1_g000045 Rmu_sc0003878.1_g000046 Rmu_sc0012229.1_g000007
rosa_roxburghii	Rroxscaffold_163G00450830 Rroxscaffold_164G00436560 Rroxscaffold_1G00034900 Rroxscaffold_3G00232570 Rroxscaffold_6G00428770
rosa_rugosa	Rorug02G0633200 Rorug05G0229400
rosa_samantha	Rh3AG036200 Rh3BG036700 Rh3CG035300 Rh3DG036200 Rh5AG309300 Rh5BG317500 Rh5BG318000 Rh5DG327800 Rh5DG328200
rosa_wichuraiana	Rw0G015940 Rw3G002670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	661
AccI	GTMKAC	1 cut(s)	755
AccII	CGCG	1 cut(s)	180
AccIII	TCCGGA	1 cut(s)	850
AciI	CCGC	3 cut(s)	140, 180, 375
AcoI	YGGCCR	1 cut(s)	372
AcsI	RAATTY	2 cut(s)	17, 293
AcuI	CTGAAG	2 cut(s)	287, 439
AcvI	CACGTG	1 cut(s)	793
AfaI	GTAC	3 cut(s)	135, 264, 789
AfiI	CCNNNNNNNGG	2 cut(s)	857, 949
AflIII	ACRYGT	3 cut(s)	692, 790, 792
AgsI	TTSAA	5 cut(s)	23, 187, 292, 406, 629
AhdI	GACNNNNNGTC	1 cut(s)	117
AjnI	CCWGG	2 cut(s)	724, 861
AluBI	AGCT	5 cut(s)	466, 472, 761, 926, 936
AluI	AGCT	5 cut(s)	466, 472, 761, 926, 936
Alw26I	GTCTC	1 cut(s)	104
Aor13HI	TCCGGA	1 cut(s)	850
AoxI	GGCC	5 cut(s)	105, 372, 679, 782, 859
ApeKI	GCWGC	3 cut(s)	245, 466, 469
ApoI	RAATTY	2 cut(s)	17, 293
ArsI	GACNNNNNNTTYG	2 cut(s)	194, 226
AspS9I	GGNCC	3 cut(s)	105, 680, 783
AsuHPI	GGTGA	3 cut(s)	107, 850, 892
BaeGI	GKGCMC	4 cut(s)	281, 391, 486, 664
BanI	GGYRCC	1 cut(s)	661
BbrPI	CACGTG	1 cut(s)	793
BbsI	GAAGAC	1 cut(s)	549
BbvI	GCAGC	3 cut(s)	257, 453, 481
BccI	CCATC	4 cut(s)	137, 364, 853, 865
BceAI	ACGGC	2 cut(s)	551, 730
BciT130I	CCWGG	2 cut(s)	726, 863
BclI	TGATCA	1 cut(s)	309
BcoDI	GTCTC	1 cut(s)	104
BfaI	CTAG	2 cut(s)	735, 902
BfmI	CTRYAG	1 cut(s)	467
BisI	GCNGC	4 cut(s)	246, 375, 467, 470
BlsI	GCNGC	4 cut(s)	247, 376, 468, 471
BmcAI	AGTACT	1 cut(s)	264
Bme1390I	CCNGG	2 cut(s)	726, 863
BmeRI	GACNNNNNGTC	1 cut(s)	117
BmgT120I	GGNCC	3 cut(s)	105, 680, 783
BmiI	GGNNCC	3 cut(s)	126, 565, 663
BmrFI	CCNGG	2 cut(s)	726, 863
BmsI	GCATC	2 cut(s)	580, 831
BpiI	GAAGAC	1 cut(s)	549
BsaAI	YACGTR	1 cut(s)	793
BsaJI	CCNNGG	1 cut(s)	240
BsaWI	WCCGGW	1 cut(s)	850
BsaXI	ACNNNNNCTCC	8 cut(s)	18, 48, 422, 452, 543, 573, 587, 617
Bsc4I	CCNNNNNNNGG	2 cut(s)	857, 949
Bse1I	ACTGG	1 cut(s)	626
Bse3DI	GCAATG	3 cut(s)	393, 499, 884
BseAI	TCCGGA	1 cut(s)	850
BseBI	CCWGG	2 cut(s)	726, 863
BseDI	CCNNGG	1 cut(s)	240
BseGI	GGATG	2 cut(s)	876, 925
BseLI	CCNNNNNNNGG	2 cut(s)	857, 949
BseMI	GCAATG	3 cut(s)	393, 499, 884
BseMII	CTCAG	1 cut(s)	675
BseNI	ACTGG	1 cut(s)	626
BseRI	GAGGAG	3 cut(s)	42, 45, 908
BseSI	GKGCMC	4 cut(s)	281, 391, 486, 664
BseXI	GCAGC	3 cut(s)	257, 453, 481
Bsh1236I	CGCG	1 cut(s)	180
BshFI	GGCC	5 cut(s)	107, 374, 681, 784, 861
BshNI	GGYRCC	1 cut(s)	661
BsiSI	CCGG	2 cut(s)	851, 890
BslI	CCNNNNNNNGG	2 cut(s)	857, 949
BsmAI	GTCTC	1 cut(s)	104
BsnI	GGCC	5 cut(s)	107, 374, 681, 784, 861
Bsp1286I	GDGCHC	4 cut(s)	281, 391, 486, 664
Bsp13I	TCCGGA	1 cut(s)	850
Bsp143I	GATC	1 cut(s)	309
Bsp19I	CCATGG	1 cut(s)	240
BspACI	CCGC	3 cut(s)	140, 180, 375
BspANI	GGCC	5 cut(s)	107, 374, 681, 784, 861
BspCNI	CTCAG	1 cut(s)	676
BspEI	TCCGGA	1 cut(s)	850
BspFNI	CGCG	1 cut(s)	180
BspLI	GGNNCC	3 cut(s)	126, 565, 663
BspMAI	CTGCAG	1 cut(s)	471
BspT107I	GGYRCC	1 cut(s)	661
BsrDI	GCAATG	3 cut(s)	393, 499, 884
BsrI	ACTGG	1 cut(s)	626
BssECI	CCNNGG	1 cut(s)	240
BssMI	GATC	1 cut(s)	309
BssNAI	GTATAC	1 cut(s)	756
BssT1I	CCWWGG	1 cut(s)	240
Bst1107I	GTATAC	1 cut(s)	756
Bst2UI	CCWGG	2 cut(s)	726, 863
Bst4CI	ACNGT	2 cut(s)	119, 880
Bst6I	CTCTTC	1 cut(s)	636
BstAPI	GCANNNNNTGC	1 cut(s)	395
BstBAI	YACGTR	1 cut(s)	793
BstC8I	GCNNGC	4 cut(s)	66, 391, 400, 428
BstDEI	CTNAG	3 cut(s)	47, 325, 684
BstDSI	CCRYGG	1 cut(s)	240
BstF5I	GGATG	2 cut(s)	876, 925
BstFNI	CGCG	1 cut(s)	180
BstKTI	GATC	1 cut(s)	312
BstMAI	GTCTC	1 cut(s)	104
BstMBI	GATC	1 cut(s)	309
BstMWI	GCNNNNNNNGC	2 cut(s)	395, 399
BstNI	CCWGG	2 cut(s)	726, 863
BstNSI	RCATGY	3 cut(s)	64, 345, 696
BstSCI	CCNGG	2 cut(s)	724, 861
BstSFI	CTRYAG	1 cut(s)	467
BstSLI	GKGCMC	4 cut(s)	281, 391, 486, 664
BstUI	CGCG	1 cut(s)	180
BstV1I	GCAGC	3 cut(s)	257, 453, 481
BstV2I	GAAGAC	1 cut(s)	549
BstXI	CCANNNNNNTGG	1 cut(s)	241
BstZ17I	GTATAC	1 cut(s)	756
BsuRI	GGCC	5 cut(s)	107, 374, 681, 784, 861
BtgI	CCRYGG	1 cut(s)	240
BtgZI	GCGATG	1 cut(s)	557
BtsCI	GGATG	2 cut(s)	876, 925
Cac8I	GCNNGC	4 cut(s)	66, 391, 400, 428
Cfr13I	GGNCC	3 cut(s)	105, 680, 783
Csp6I	GTAC	3 cut(s)	134, 263, 788
CviQI	GTAC	3 cut(s)	134, 263, 788
DdeI	CTNAG	3 cut(s)	47, 325, 684
DpnI	GATC	1 cut(s)	311
DpnII	GATC	1 cut(s)	309
DriI	GACNNNNNGTC	1 cut(s)	117
EaeI	YGGCCR	1 cut(s)	372
Eam1104I	CTCTTC	1 cut(s)	636
Eam1105I	GACNNNNNGTC	1 cut(s)	117
EarI	CTCTTC	1 cut(s)	636
Eco130I	CCWWGG	1 cut(s)	240
Eco147I	AGGCCT	1 cut(s)	861
Eco57I	CTGAAG	2 cut(s)	287, 439
Eco72I	CACGTG	1 cut(s)	793
EcoRII	CCWGG	2 cut(s)	724, 861
EcoT14I	CCWWGG	1 cut(s)	240
ErhI	CCWWGG	1 cut(s)	240
FalI	AAGNNNNNCTT	2 cut(s)	530, 562
FauI	CCCGC	1 cut(s)	147
FauNDI	CATATG	1 cut(s)	711
FbaI	TGATCA	1 cut(s)	309
FblI	GTMKAC	1 cut(s)	755
Fnu4HI	GCNGC	4 cut(s)	246, 375, 467, 470
FokI	GGATG	2 cut(s)	883, 932
Fsp4HI	GCNGC	4 cut(s)	246, 375, 467, 470
FspBI	CTAG	2 cut(s)	735, 902
GluI	GCNGC	4 cut(s)	246, 375, 467, 470
HaeIII	GGCC	5 cut(s)	107, 374, 681, 784, 861
HapII	CCGG	2 cut(s)	851, 890
HincII	GTYRAC	3 cut(s)	451, 690, 718
HindII	GTYRAC	3 cut(s)	451, 690, 718
HinfI	GANTC	5 cut(s)	112, 164, 183, 586, 629
HpaII	CCGG	2 cut(s)	851, 890
HphI	GGTGA	3 cut(s)	107, 850, 892
Hpy166II	GTNNAC	6 cut(s)	136, 451, 690, 718, 756, 790
Hpy188I	TCNGA	1 cut(s)	563
Hpy188III	TCNNGA	5 cut(s)	122, 457, 633, 851, 917
Hpy8I	GTNNAC	6 cut(s)	136, 451, 690, 718, 756, 790
Hpy99I	CGWCG	1 cut(s)	123
HpyAV	CCTTC	5 cut(s)	17, 153, 812, 818, 848
HpyCH4III	ACNGT	2 cut(s)	119, 880
HpyCH4IV	ACGT	1 cut(s)	792
HpyCH4V	TGCA	5 cut(s)	64, 353, 469, 502, 571
HpyF10VI	GCNNNNNNNGC	2 cut(s)	395, 399
HpyF3I	CTNAG	3 cut(s)	47, 325, 684
HpySE526I	ACGT	1 cut(s)	792
Kpn2I	TCCGGA	1 cut(s)	850
Ksp22I	TGATCA	1 cut(s)	309
Kzo9I	GATC	1 cut(s)	309
LmnI	GCTCC	3 cut(s)	4, 563, 706
Lsp1109I	GCAGC	3 cut(s)	257, 453, 481
LweI	GCATC	2 cut(s)	580, 831
MaeI	CTAG	2 cut(s)	735, 902
MaeII	ACGT	1 cut(s)	792
MaeIII	GTNAC	2 cut(s)	874, 880
MalI	GATC	1 cut(s)	311
MboI	GATC	1 cut(s)	309
MboII	GAAGA	5 cut(s)	280, 472, 545, 554, 653
MhlI	GDGCHC	4 cut(s)	281, 391, 486, 664
MluCI	AATT	3 cut(s)	17, 293, 729
MlyI	GAGTC	3 cut(s)	106, 158, 595
MmeI	TCCRAC	2 cut(s)	541, 787
MroI	TCCGGA	1 cut(s)	850
MseI	TTAA	1 cut(s)	938
MslI	CAYNNNNRTG	1 cut(s)	576
MspA1I	CMGCKG	1 cut(s)	761
MspI	CCGG	2 cut(s)	851, 890
MspR9I	CCNGG	2 cut(s)	726, 863
MvaI	CCWGG	2 cut(s)	726, 863
MvnI	CGCG	1 cut(s)	180
MwoI	GCNNNNNNNGC	2 cut(s)	395, 399
NcoI	CCATGG	1 cut(s)	240
NdeI	CATATG	1 cut(s)	711
NdeII	GATC	1 cut(s)	309
NlaIV	GGNNCC	3 cut(s)	126, 565, 663
NmeAIII	GCCGAG	1 cut(s)	133
NmuCI	GTSAC	1 cut(s)	880
NspI	RCATGY	3 cut(s)	64, 345, 696
PceI	AGGCCT	1 cut(s)	861
PciI	ACATGT	1 cut(s)	692
PfeI	GAWTC	2 cut(s)	183, 629
PfoI	TCCNGGA	1 cut(s)	724
PkrI	GCNGC	4 cut(s)	247, 376, 468, 471
PleI	GAGTC	3 cut(s)	106, 158, 594
PmaCI	CACGTG	1 cut(s)	793
PmlI	CACGTG	1 cut(s)	793
PpsI	GAGTC	3 cut(s)	106, 158, 594
Ppu21I	YACGTR	1 cut(s)	793
PscI	ACATGT	1 cut(s)	692
Psp6I	CCWGG	2 cut(s)	724, 861
PspCI	CACGTG	1 cut(s)	793
PspGI	CCWGG	2 cut(s)	724, 861
PspN4I	GGNNCC	3 cut(s)	126, 565, 663
PspPI	GGNCC	3 cut(s)	105, 680, 783
PsrI	GAACNNNNNNTAC	2 cut(s)	117, 149
PstI	CTGCAG	1 cut(s)	471
PvuII	CAGCTG	1 cut(s)	761
RsaI	GTAC	3 cut(s)	135, 264, 789
RsaNI	GTAC	3 cut(s)	134, 263, 788
RseI	CAYNNNNRTG	1 cut(s)	576
SaqAI	TTAA	1 cut(s)	938
SatI	GCNGC	4 cut(s)	246, 375, 467, 470
Sau3AI	GATC	1 cut(s)	309
Sau96I	GGNCC	3 cut(s)	105, 680, 783
ScaI	AGTACT	1 cut(s)	264
SchI	GAGTC	3 cut(s)	106, 158, 595
ScrFI	CCNGG	2 cut(s)	726, 863
SduI	GDGCHC	4 cut(s)	281, 391, 486, 664
SfaNI	GCATC	2 cut(s)	580, 831
SfcI	CTRYAG	1 cut(s)	467
SmiMI	CAYNNNNRTG	1 cut(s)	576
Sse9I	AATT	3 cut(s)	17, 293, 729
SseBI	AGGCCT	1 cut(s)	861
SsiI	CCGC	3 cut(s)	140, 180, 375
SspMI	CTAG	2 cut(s)	735, 902
StuI	AGGCCT	1 cut(s)	861
StyD4I	CCNGG	2 cut(s)	724, 861
StyI	CCWWGG	1 cut(s)	240
TaaI	ACNGT	2 cut(s)	119, 880
TaiI	ACGT	1 cut(s)	795
TaqI	TCGA	1 cut(s)	584
TasI	AATT	3 cut(s)	17, 293, 729
TatI	WGTACW	1 cut(s)	262
TauI	GCSGC	1 cut(s)	377
TfiI	GAWTC	2 cut(s)	183, 629
Tru1I	TTAA	1 cut(s)	938
Tru9I	TTAA	1 cut(s)	938
TseFI	GTSAC	1 cut(s)	880
TseI	GCWGC	3 cut(s)	245, 466, 469
Tsp45I	GTSAC	1 cut(s)	880
TspDTI	ATGAA	3 cut(s)	318, 507, 936
XapI	RAATTY	2 cut(s)	17, 293
XceI	RCATGY	3 cut(s)	64, 345, 696
XmiI	GTMKAC	1 cut(s)	755
XspI	CTAG	2 cut(s)	735, 902
ZrmI	AGTACT	1 cut(s)	264

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.