Rroxscaffold_6G00428770

Transferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0004543
Physical Location & Seq
Reverse (-)
49140685 .. 49145222
4538 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00428770.1

Sequence Viewer

Length: 1404 bp
ATGATGAAGCAGAACCAGAGCAACCGGGTGGCTGTCCGGTCAAAGCTAACGGCAGTATCCAGCAGGCCGGTGAACCCGGGTACGATCCATTCTTTCACGGGTCTGGACCATGCAATGGCCTTGCACAGCGTTCACGTGATATTCTACTACAAGGAGAAGCTGTTTTCATATTTTGACTTGGATCCGTTTCGGGTGTGTCTCTCGGAGATCCTATCACTGTACCCGCCGGTGACGGGTAGGATAGTCCGGAGAGAGGTAGACGGTGAGTGGGAGGTCAAGTGTAACGATGCCGGTGTTAGGCTGGTGAAGGCCACGGTGGCGACAACACTTGATGAGTGGCTGGGATCTGCTGATGGGGCGGAGGAGAGGTTGTTGACGGCGTGGGATGATATGCCTCATGATGATCCTAGTTCATGGTCTCCGTATAAAATCCAGATAAATGAATTTGAAGGAGGAGGAGTAGCCATTGGACTAAGTTGCTCTCACATGCAAGCAGACCCAACTTGTGCGACTCTACTAATCAAGTCATGGGCCGAGACTCATCGCCGGGAACCCATCGTACACCCACCTTCCTTCAACGACTTATCAGACTCGCCACTCACTCGCGAACTCAACATTCACAATACAAACGCAAAGTCATCACGCGCTGATTACGAAGCCAAGTCCATGGCAGCAGAGACCCCATTAGTACAGAAGAAAATGGGCACAGCCACTTTCAAATTTTCCAATGAAGTGATCAAGCAAAGCCTCTTAGAAATCCACCAAACATGCCCTGCTGCAACCCCGTTTGATTTGCTGGCCGCACTCTTTTGGGCACGCATTGCTCGTTTGAAGCACCCGAAAAGTGGAAGCAAGCACTCCCTCTCCATTTGTGTCGACTTCAGGAAGAAGCTGCAGCTCTCTTATGGGCACTATGGCAATACCATGCATTTTTCATTGCTTTCATTACCTGATGTGGAAGAAAAGCAAGACTTGGGAGATGTGGCCGGAGCAGTGCACCGCCATGTGTCGAGTCAGGGGCAGGGGGAGTTTTGGTCTGCTTTAGATTGGTTTGAATCACAAAAGGAAGAGGGAGGTCAGTTTGGGGCACCTTTTAGGATGTACGGCCCCAAGTTGACATGTATGAGCATGGAGCATATGGTTGACTTTCCTGGGATGACTGAGAATAAGCCGTTAATGTATACAACTGTATTTGATAAGGAGAACATGCCCATACATGTGTCATATCATGTTGGAAATGTGGAAGGGGAAGGGTTGATAATGGTGATGCCATCTCCGAAAGGAGGGTTGGCGAGGATGGTTACGGTGACATTGCCGGATGAGGAACTAGAGCAGCTATGTCAGGATGAAGCTATTTCGAGCTTAAACCCAATAATGGTCATAAGTGGGACGAGACGGGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Transferase

Protein Analysis

467

Amino Acids

52.1

Weight (kDa)

5.95

Isoelectric Point (pI)

44.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transferase PF02458 34 - 449 1.2e-37 Transferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1087
AccB7I CCANNNNNTGG 1 cut(s) 115
AccI GTMKAC 3 cut(s) 258, 876, 1181
AccII CGCG 2 cut(s) 606, 645
AccIII TCCGGA 1 cut(s) 246
AciI CCGC 4 cut(s) 224, 359, 801, 1000
AclWI GGATC 6 cut(s) 79, 176, 189, 202, 352, 398
AcoI YGGCCR 2 cut(s) 798, 984
AcsI RAATTY 2 cut(s) 443, 719
AcuI CTGAAG 1 cut(s) 865
AcvI CACGTG 1 cut(s) 136
AfaI GTAC 5 cut(s) 82, 221, 561, 690, 1103
AfiI CCNNNNNNNGG 7 cut(s) 115, 233, 253, 297, 845, 1283, 1375
AflIII ACRYGT 2 cut(s) 1118, 1216
AgsI TTSAA 5 cut(s) 449, 577, 718, 832, 1055
AjnI CCWGG 1 cut(s) 1150
AjuI GAANNNNNNNTTGG 2 cut(s) 1271, 1303
AluBI AGCT 7 cut(s) 46, 160, 892, 898, 1336, 1352, 1362
AluI AGCT 7 cut(s) 46, 160, 892, 898, 1336, 1352, 1362
Alw21I GWGCWC 1 cut(s) 999
Alw26I GTCTC 5 cut(s) 203, 423, 530, 671, 1387
Alw44I GTGCAC 1 cut(s) 995
AlwI GGATC 6 cut(s) 79, 176, 189, 202, 352, 398
Ama87I CYCGRG 1 cut(s) 76
Aor13HI TCCGGA 1 cut(s) 246
AoxI GGCC 7 cut(s) 65, 117, 309, 531, 798, 984, 1105
ApaLI GTGCAC 1 cut(s) 995
ApeKI GCWGC 5 cut(s) 671, 776, 892, 895, 1333
ApoI RAATTY 2 cut(s) 443, 719
ArsI GACNNNNNNTTYG 2 cut(s) 620, 652
AspLEI GCGC 1 cut(s) 647
AspS9I GGNCC 3 cut(s) 106, 531, 1106
AsuC2I CCSGG 4 cut(s) 26, 77, 78, 548
AsuHPI GGTGA 6 cut(s) 82, 241, 275, 316, 1276, 1318
AvaI CYCGRG 1 cut(s) 76
AvaII GGWCC 1 cut(s) 106
BaeGI GKGCMC 5 cut(s) 707, 817, 912, 999, 1090
BaeI ACNNNNGTAYC 2 cut(s) 39, 72
BamHI GGATCC 1 cut(s) 181
BanI GGYRCC 1 cut(s) 1087
BbrPI CACGTG 1 cut(s) 136
Bbv12I GWGCWC 1 cut(s) 999
BbvI GCAGC 5 cut(s) 683, 763, 879, 907, 1345
BccI CCATC 4 cut(s) 347, 563, 1279, 1291
BceAI ACGGC 4 cut(s) 66, 393, 1120, 1156
BciT130I CCWGG 1 cut(s) 1152
BciVI GTATCC 1 cut(s) 67
BclI TGATCA 1 cut(s) 735
BcnI CCSGG 4 cut(s) 26, 77, 78, 548
BcoDI GTCTC 5 cut(s) 203, 423, 530, 671, 1387
BfaI CTAG 2 cut(s) 408, 1328
BfmI CTRYAG 1 cut(s) 893
BfuI GTATCC 1 cut(s) 67
BglI GCCNNNNNGGC 1 cut(s) 317
BisI GCNGC 6 cut(s) 672, 777, 801, 893, 896, 1334
BlsI GCNGC 6 cut(s) 673, 778, 802, 894, 897, 1335
Bme1390I CCNGG 5 cut(s) 26, 77, 78, 548, 1152
Bme18I GGWCC 1 cut(s) 106
BmeT110I CYCGRG 1 cut(s) 76
BmgT120I GGNCC 3 cut(s) 106, 531, 1106
BmiI GGNNCC 4 cut(s) 183, 552, 1089, 1108
BmrFI CCNGG 5 cut(s) 26, 77, 78, 548, 1152
BmsI GCATC 2 cut(s) 277, 1257
BpuMI CCSGG 4 cut(s) 26, 77, 78, 548
BsaAI YACGTR 1 cut(s) 136
BsaI GGTCTC 2 cut(s) 423, 671
BsaJI CCNNGG 4 cut(s) 76, 312, 666, 1151
BsaWI WCCGGW 2 cut(s) 36, 246
Bsc4I CCNNNNNNNGG 7 cut(s) 115, 233, 253, 297, 845, 1283, 1375
Bse118I RCCGGY 3 cut(s) 67, 226, 290
Bse3DI GCAATG 4 cut(s) 120, 819, 935, 1310
BseAI TCCGGA 1 cut(s) 246
BseBI CCWGG 1 cut(s) 1152
BseDI CCNNGG 4 cut(s) 76, 312, 666, 1151
BseGI GGATG 6 cut(s) 391, 1104, 1161, 1302, 1324, 1351
BseLI CCNNNNNNNGG 7 cut(s) 115, 233, 253, 297, 845, 1283, 1375
BseMI GCAATG 4 cut(s) 120, 819, 935, 1310
BseMII CTCAG 1 cut(s) 1152
BseRI GAGGAG 3 cut(s) 377, 468, 471
BseSI GKGCMC 5 cut(s) 707, 817, 912, 999, 1090
BseXI GCAGC 5 cut(s) 683, 763, 879, 907, 1345
BseYI CCCAGC 1 cut(s) 340
Bsh1236I CGCG 2 cut(s) 606, 645
BshFI GGCC 7 cut(s) 67, 119, 311, 533, 800, 986, 1107
BshNI GGYRCC 1 cut(s) 1087
BsiHKAI GWGCWC 1 cut(s) 999
BsiHKCI CYCGRG 1 cut(s) 76
BslI CCNNNNNNNGG 7 cut(s) 115, 233, 253, 297, 845, 1283, 1375
BsmAI GTCTC 5 cut(s) 203, 423, 530, 671, 1387
BsmBI CGTCTC 1 cut(s) 1387
BsnI GGCC 7 cut(s) 67, 119, 311, 533, 800, 986, 1107
Bso31I GGTCTC 2 cut(s) 423, 671
BsoBI CYCGRG 1 cut(s) 76
Bsp1286I GDGCHC 5 cut(s) 707, 817, 912, 999, 1090
Bsp13I TCCGGA 1 cut(s) 246
Bsp143I GATC 6 cut(s) 84, 181, 207, 344, 403, 735
Bsp19I CCATGG 1 cut(s) 666
Bsp68I TCGCGA 1 cut(s) 606
BspACI CCGC 4 cut(s) 224, 359, 801, 1000
BspANI GGCC 7 cut(s) 67, 119, 311, 533, 800, 986, 1107
BspCNI CTCAG 1 cut(s) 1153
BspEI TCCGGA 1 cut(s) 246
BspFNI CGCG 2 cut(s) 606, 645
BspHI TCATGA 1 cut(s) 397
BspLI GGNNCC 4 cut(s) 183, 552, 1089, 1108
BspMAI CTGCAG 1 cut(s) 897
BspPI GGATC 6 cut(s) 79, 176, 189, 202, 352, 398
BspT107I GGYRCC 1 cut(s) 1087
BspTNI GGTCTC 2 cut(s) 423, 671
BsrDI GCAATG 4 cut(s) 120, 819, 935, 1310
BsrFI RCCGGY 3 cut(s) 67, 226, 290
BssAI RCCGGY 3 cut(s) 67, 226, 290
BssECI CCNNGG 4 cut(s) 76, 312, 666, 1151
BssMI GATC 6 cut(s) 84, 181, 207, 344, 403, 735
BssNAI GTATAC 1 cut(s) 1182
BssT1I CCWWGG 1 cut(s) 666
Bst1107I GTATAC 1 cut(s) 1182
Bst2UI CCWGG 1 cut(s) 1152
Bst4CI ACNGT 5 cut(s) 219, 263, 316, 1189, 1306
Bst6I CTCTTC 1 cut(s) 1062
BstAPI GCANNNNNTGC 1 cut(s) 821
BstBAI YACGTR 1 cut(s) 136
BstC8I GCNNGC 5 cut(s) 65, 492, 798, 817, 854
BstDEI CTNAG 3 cut(s) 473, 751, 1161
BstDSI CCRYGG 2 cut(s) 312, 666
BstF5I GGATG 6 cut(s) 391, 1104, 1161, 1302, 1324, 1351
BstFNI CGCG 2 cut(s) 606, 645
BstHHI GCGC 1 cut(s) 647
BstKTI GATC 6 cut(s) 87, 184, 210, 347, 406, 738
BstMAI GTCTC 5 cut(s) 203, 423, 530, 671, 1387
BstMBI GATC 6 cut(s) 84, 181, 207, 344, 403, 735
BstMWI GCNNNNNNNGC 3 cut(s) 317, 356, 821
BstNI CCWGG 1 cut(s) 1152
BstNSI RCATGY 5 cut(s) 490, 771, 1122, 1210, 1220
BstSCI CCNGG 5 cut(s) 24, 75, 76, 546, 1150
BstSFI CTRYAG 1 cut(s) 893
BstSLI GKGCMC 5 cut(s) 707, 817, 912, 999, 1090
BstUI CGCG 2 cut(s) 606, 645
BstV1I GCAGC 5 cut(s) 683, 763, 879, 907, 1345
BstX2I RGATCY 3 cut(s) 181, 207, 344
BstXI CCANNNNNNTGG 1 cut(s) 667
BstYI RGATCY 3 cut(s) 181, 207, 344
BstZ17I GTATAC 1 cut(s) 1182
BsuI GTATCC 1 cut(s) 67
BsuRI GGCC 7 cut(s) 67, 119, 311, 533, 800, 986, 1107
BtgI CCRYGG 2 cut(s) 312, 666
BtgZI GCGATG 1 cut(s) 527
BtsCI GGATG 6 cut(s) 391, 1104, 1161, 1302, 1324, 1351
BtsI GCAGTG 1 cut(s) 999
BtsIMutI CAGTG 2 cut(s) 215, 999
BtuMI TCGCGA 1 cut(s) 606
Cac8I GCNNGC 5 cut(s) 65, 492, 798, 817, 854
CciI TCATGA 1 cut(s) 397
CfoI GCGC 1 cut(s) 647
Cfr10I RCCGGY 3 cut(s) 67, 226, 290
Cfr13I GGNCC 3 cut(s) 106, 531, 1106
Cfr9I CCCGGG 1 cut(s) 76
Csp6I GTAC 5 cut(s) 81, 220, 560, 689, 1102
CviQI GTAC 5 cut(s) 81, 220, 560, 689, 1102
DdeI CTNAG 3 cut(s) 473, 751, 1161
DpnI GATC 6 cut(s) 86, 183, 209, 346, 405, 737
DpnII GATC 6 cut(s) 84, 181, 207, 344, 403, 735
EaeI YGGCCR 2 cut(s) 798, 984
Eam1104I CTCTTC 1 cut(s) 1062
EarI CTCTTC 1 cut(s) 1062
EciI GGCGGA 1 cut(s) 374
Eco130I CCWWGG 1 cut(s) 666
Eco31I GGTCTC 2 cut(s) 423, 671
Eco47I GGWCC 1 cut(s) 106
Eco57I CTGAAG 1 cut(s) 865
Eco72I CACGTG 1 cut(s) 136
Eco88I CYCGRG 1 cut(s) 76
EcoRII CCWGG 1 cut(s) 1150
EcoT14I CCWWGG 1 cut(s) 666
EcoT22I ATGCAT 1 cut(s) 930
ErhI CCWWGG 1 cut(s) 666
Esp3I CGTCTC 1 cut(s) 1387
FalI AAGNNNNNCTT 2 cut(s) 956, 988
FauI CCCGC 1 cut(s) 231
FauNDI CATATG 1 cut(s) 1137
FbaI TGATCA 1 cut(s) 735
FblI GTMKAC 3 cut(s) 258, 876, 1181
Fnu4HI GCNGC 6 cut(s) 672, 777, 801, 893, 896, 1334
FokI GGATG 6 cut(s) 398, 1111, 1168, 1309, 1331, 1358
Fsp4HI GCNGC 6 cut(s) 672, 777, 801, 893, 896, 1334
FspBI CTAG 2 cut(s) 408, 1328
GlaI GCGC 1 cut(s) 646
GluI GCNGC 6 cut(s) 672, 777, 801, 893, 896, 1334
GsaI CCCAGC 1 cut(s) 344
HaeIII GGCC 7 cut(s) 67, 119, 311, 533, 800, 986, 1107
HhaI GCGC 1 cut(s) 647
Hin6I GCGC 1 cut(s) 645
HinP1I GCGC 1 cut(s) 645
HincII GTYRAC 4 cut(s) 375, 877, 1116, 1144
HindII GTYRAC 4 cut(s) 375, 877, 1116, 1144
HinfI GANTC 5 cut(s) 511, 538, 590, 1012, 1055
HphI GGTGA 6 cut(s) 82, 241, 275, 316, 1276, 1318
Hpy188I TCNGA 3 cut(s) 205, 589, 1278
Hpy188III TCNNGA 7 cut(s) 104, 247, 398, 433, 605, 883, 1343
HpyAV CCTTC 6 cut(s) 301, 443, 579, 583, 1238, 1244
HpyCH4III ACNGT 5 cut(s) 219, 263, 316, 1189, 1306
HpyCH4IV ACGT 1 cut(s) 135
HpyCH4V TGCA 7 cut(s) 113, 124, 490, 779, 895, 928, 997
HpyF10VI GCNNNNNNNGC 3 cut(s) 317, 356, 821
HpyF3I CTNAG 3 cut(s) 473, 751, 1161
HpySE526I ACGT 1 cut(s) 135
HspAI GCGC 1 cut(s) 645
Kpn2I TCCGGA 1 cut(s) 246
Ksp22I TGATCA 1 cut(s) 735
Kzo9I GATC 6 cut(s) 84, 181, 207, 344, 403, 735
LmnI GCTCC 2 cut(s) 989, 1132
Lsp1109I GCAGC 5 cut(s) 683, 763, 879, 907, 1345
LweI GCATC 2 cut(s) 277, 1257
MaeI CTAG 2 cut(s) 408, 1328
MaeII ACGT 1 cut(s) 135
MaeIII GTNAC 4 cut(s) 229, 281, 1300, 1306
MalI GATC 6 cut(s) 86, 183, 209, 346, 405, 737
MboI GATC 6 cut(s) 84, 181, 207, 344, 403, 735
MboII GAAGA 4 cut(s) 706, 898, 971, 1079
MflI RGATCY 3 cut(s) 181, 207, 344
MhlI GDGCHC 5 cut(s) 707, 817, 912, 999, 1090
MluCI AATT 2 cut(s) 443, 719
MlyI GAGTC 4 cut(s) 505, 532, 584, 1021
MmeI TCCRAC 1 cut(s) 1213
Mph1103I ATGCAT 1 cut(s) 930
MroI TCCGGA 1 cut(s) 246
MseI TTAA 2 cut(s) 1175, 1364
MslI CAYNNNNRTG 2 cut(s) 1002, 1217
MspR9I CCNGG 5 cut(s) 26, 77, 78, 548, 1152
MvaI CCWGG 1 cut(s) 1152
MvnI CGCG 2 cut(s) 606, 645
MwoI GCNNNNNNNGC 3 cut(s) 317, 356, 821
NciI CCSGG 4 cut(s) 26, 77, 78, 548
NcoI CCATGG 1 cut(s) 666
NdeI CATATG 1 cut(s) 1137
NdeII GATC 6 cut(s) 84, 181, 207, 344, 403, 735
NlaIV GGNNCC 4 cut(s) 183, 552, 1089, 1108
NmeAIII GCCGAG 1 cut(s) 559
NmuCI GTSAC 2 cut(s) 229, 1306
NruI TCGCGA 1 cut(s) 606
NsiI ATGCAT 1 cut(s) 930
NspI RCATGY 5 cut(s) 490, 771, 1122, 1210, 1220
PagI TCATGA 1 cut(s) 397
PciI ACATGT 2 cut(s) 1118, 1216
PcsI WCGNNNNNNNCGW 1 cut(s) 823
PfeI GAWTC 1 cut(s) 1055
PflMI CCANNNNNTGG 1 cut(s) 115
PkrI GCNGC 6 cut(s) 673, 778, 802, 894, 897, 1335
PleI GAGTC 4 cut(s) 505, 532, 584, 1020
PmaCI CACGTG 1 cut(s) 136
PmlI CACGTG 1 cut(s) 136
PpsI GAGTC 4 cut(s) 505, 532, 584, 1020
Ppu21I YACGTR 1 cut(s) 136
PscI ACATGT 2 cut(s) 1118, 1216
Psp6I CCWGG 1 cut(s) 1150
PspCI CACGTG 1 cut(s) 136
PspFI CCCAGC 1 cut(s) 340
PspGI CCWGG 1 cut(s) 1150
PspN4I GGNNCC 4 cut(s) 183, 552, 1089, 1108
PspPI GGNCC 3 cut(s) 106, 531, 1106
PsrI GAACNNNNNNTAC 2 cut(s) 543, 575
PstI CTGCAG 1 cut(s) 897
PsuI RGATCY 3 cut(s) 181, 207, 344
RruI TCGCGA 1 cut(s) 606
RsaI GTAC 5 cut(s) 82, 221, 561, 690, 1103
RsaNI GTAC 5 cut(s) 81, 220, 560, 689, 1102
RseI CAYNNNNRTG 2 cut(s) 1002, 1217
SalI GTCGAC 1 cut(s) 875
SaqAI TTAA 2 cut(s) 1175, 1364
SatI GCNGC 6 cut(s) 672, 777, 801, 893, 896, 1334
Sau3AI GATC 6 cut(s) 84, 181, 207, 344, 403, 735
Sau96I GGNCC 3 cut(s) 106, 531, 1106
SchI GAGTC 4 cut(s) 505, 532, 584, 1021
ScrFI CCNGG 5 cut(s) 26, 77, 78, 548, 1152
SduI GDGCHC 5 cut(s) 707, 817, 912, 999, 1090
SfaNI GCATC 2 cut(s) 277, 1257
SfcI CTRYAG 1 cut(s) 893
SgrAI CRCCGGYG 1 cut(s) 226
SinI GGWCC 1 cut(s) 106
SmaI CCCGGG 1 cut(s) 78
SmiMI CAYNNNNRTG 2 cut(s) 1002, 1217
Sse9I AATT 2 cut(s) 443, 719
SsiI CCGC 4 cut(s) 224, 359, 801, 1000
SspMI CTAG 2 cut(s) 408, 1328
StyD4I CCNGG 5 cut(s) 24, 75, 76, 546, 1150
StyI CCWWGG 1 cut(s) 666
TaaI ACNGT 5 cut(s) 219, 263, 316, 1189, 1306
TaiI ACGT 1 cut(s) 138
TaqI TCGA 3 cut(s) 876, 1010, 1358
TasI AATT 2 cut(s) 443, 719
TatI WGTACW 1 cut(s) 688
TauI GCSGC 1 cut(s) 803
TfiI GAWTC 1 cut(s) 1055
Tru1I TTAA 2 cut(s) 1175, 1364
Tru9I TTAA 2 cut(s) 1175, 1364
TscAI CASTG 2 cut(s) 222, 999
TseFI GTSAC 2 cut(s) 229, 1306
TseI GCWGC 5 cut(s) 671, 776, 892, 895, 1333
Tsp45I GTSAC 2 cut(s) 229, 1306
TspDTI ATGAA 8 cut(s) 20, 156, 402, 456, 744, 924, 933, 1362
TspGWI ACGGA 2 cut(s) 174, 411
TspMI CCCGGG 1 cut(s) 76
TspRI CASTG 2 cut(s) 222, 999
Van91I CCANNNNNTGG 1 cut(s) 115
VneI GTGCAC 1 cut(s) 995
VpaK11BI GGWCC 1 cut(s) 106
XapI RAATTY 2 cut(s) 443, 719
XceI RCATGY 5 cut(s) 490, 771, 1122, 1210, 1220
XmaI CCCGGG 1 cut(s) 76
XmiI GTMKAC 3 cut(s) 258, 876, 1181
XspI CTAG 2 cut(s) 408, 1328
Zsp2I ATGCAT 1 cut(s) 930
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.