Rroxscaffold_1G00034900

Transferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0004543
Physical Location & Seq
Forward (+)
50653967 .. 50656449
2483 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00034900.1

Sequence Viewer

Length: 1056 bp
ATGATGAAGCAGGACAAGAGCAACCGGGTGGCTGTCCGTTCAAAGCTAACGGCAGTATCCAGCAGGCCGGTGAACCCGGGTACGATCCATTCTTTCACGGGTCTGGATCATGCAATGGCCCTGCACAGCGTTCACGTGATATTCTACTACAAGGAGAAGCTGTTTTCACATTTTGACTTGGACCCGTTTATGGTGTGTCTCTCGGAGACGCTATCGCTGTACCCGCCGGTGACGGGTCGGATAGTGCGGAGAGAGGTCGACGGTGAGTGGGAGGTCAAGTGTAACGATGCCGGCGTGAGGGTGGTGAAGGCCACGGTGGCGACAACACTTGATGAGTGGCTGGCAAGTGCTGATGGGGCGGAGGAGAGGTTGTTGACGGCGTGGGATGATATGCCTCATGGTGATTCTAGTTCATGGTCGCCGTATAGAATCCAGATAAATGAATTTGAAGGAGGAGGAGTAGCCATTGGACTAAGTTGCTCTCACATGCAAGCAGACCCAACTTGTGCGACCCTACTCATCAAGTCATGGGCCGAGATTCACCGCCGGGAAACCGTCGTATACCCGCCTTCCTTTGACGACTTATCGAACCCACCACTCACTCGCGGACTCAACATTCACAAGACAAACACAAAGTCATCATGCGCTTATTACGAAGCCAAGTCCATGGCAGCACAGACCCCATTAATACTAAAGAAAATGGGCACAGCCACTTTCAAATTTTCCAATGAAGTGATCAAGCAAAGCCTCTTAGAAATCTACCAAACATGCTCTGTTGCAACCCCGTTTGATTTGCTGACCGCACTCTTTTGGGTACGCATTGCTCGCATGAAGCACCCGAAAAGCAAAAGCAAGCACTCCCTCTCCATTTGTGTCGACTTCAGGAAGAAGCTCCCGCTCTCTTATGGACACTACGGCAATGCCTTGCATTTTTCGTTGCTTTCATTACCTGATGTGGAAGAAAAGGAAGACTTCGGAGATGTGGCCAAAGCCGTGCACCGCCATGTGTCGAGTCAGGGGGGAAGGGGAGTTTTGGTCTGCTTTAGACTGGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Transferase

Protein Analysis

351

Amino Acids

39.2

Weight (kDa)

8.52

Isoelectric Point (pI)

36.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transferase PF02458 34 - 337 1.6e-33 Transferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 898
AccI GTMKAC 3 cut(s) 258, 561, 876
AccII CGCG 1 cut(s) 606
AciI CCGC 9 cut(s) 224, 247, 359, 544, 566, 606, 801, 896, 1000
AclWI GGATC 2 cut(s) 79, 114
AcoI YGGCCR 1 cut(s) 984
AcsI RAATTY 2 cut(s) 443, 719
AcuI CTGAAG 1 cut(s) 865
AcvI CACGTG 1 cut(s) 136
AfaI GTAC 3 cut(s) 82, 221, 816
AfiI CCNNNNNNNGG 3 cut(s) 190, 233, 297
AgsI TTSAA 3 cut(s) 42, 449, 718
AluBI AGCT 3 cut(s) 46, 160, 892
AluI AGCT 3 cut(s) 46, 160, 892
Alw21I GWGCWC 1 cut(s) 999
Alw26I GTCTC 2 cut(s) 200, 203
Alw44I GTGCAC 1 cut(s) 995
AlwI GGATC 2 cut(s) 79, 114
Ama87I CYCGRG 1 cut(s) 76
AoxI GGCC 5 cut(s) 65, 117, 309, 531, 984
ApaLI GTGCAC 1 cut(s) 995
ApeKI GCWGC 1 cut(s) 671
ApoI RAATTY 2 cut(s) 443, 719
ArsI GACNNNNNNTTYG 2 cut(s) 620, 652
AseI ATTAAT 1 cut(s) 686
AspLEI GCGC 1 cut(s) 647
AspS9I GGNCC 3 cut(s) 118, 181, 531
AsuC2I CCSGG 4 cut(s) 26, 77, 78, 548
AsuHPI GGTGA 6 cut(s) 82, 241, 275, 316, 413, 533
AvaI CYCGRG 1 cut(s) 76
AvaII GGWCC 1 cut(s) 181
BaeGI GKGCMC 2 cut(s) 707, 999
BaeI ACNNNNGTAYC 2 cut(s) 39, 72
BalI TGGCCA 1 cut(s) 986
BbrPI CACGTG 1 cut(s) 136
BbsI GAAGAC 1 cut(s) 975
Bbv12I GWGCWC 1 cut(s) 999
BbvI GCAGC 1 cut(s) 683
BccI CCATC 1 cut(s) 347
BceAI ACGGC 5 cut(s) 66, 393, 406, 931, 977
BciVI GTATCC 1 cut(s) 67
BclI TGATCA 1 cut(s) 735
BcnI CCSGG 4 cut(s) 26, 77, 78, 548
BcoDI GTCTC 2 cut(s) 200, 203
BfaI CTAG 1 cut(s) 408
BfuI GTATCC 1 cut(s) 67
BglI GCCNNNNNGGC 1 cut(s) 317
BisI GCNGC 1 cut(s) 672
BlsI GCNGC 1 cut(s) 673
Bme1390I CCNGG 4 cut(s) 26, 77, 78, 548
Bme18I GGWCC 1 cut(s) 181
BmeT110I CYCGRG 1 cut(s) 76
BmgT120I GGNCC 3 cut(s) 118, 181, 531
BmiI GGNNCC 1 cut(s) 183
BmrFI CCNGG 4 cut(s) 26, 77, 78, 548
BmsI GCATC 1 cut(s) 277
BpiI GAAGAC 1 cut(s) 975
BpuMI CCSGG 4 cut(s) 26, 77, 78, 548
BsaAI YACGTR 1 cut(s) 136
BsaJI CCNNGG 3 cut(s) 76, 312, 666
Bsc4I CCNNNNNNNGG 3 cut(s) 190, 233, 297
Bse118I RCCGGY 3 cut(s) 67, 226, 290
Bse1I ACTGG 1 cut(s) 1053
Bse3DI GCAATG 3 cut(s) 120, 819, 925
BseDI CCNNGG 3 cut(s) 76, 312, 666
BseGI GGATG 1 cut(s) 391
BseLI CCNNNNNNNGG 3 cut(s) 190, 233, 297
BseMI GCAATG 3 cut(s) 120, 819, 925
BseNI ACTGG 1 cut(s) 1053
BseRI GAGGAG 3 cut(s) 377, 468, 471
BseSI GKGCMC 2 cut(s) 707, 999
BseXI GCAGC 1 cut(s) 683
BsgI GTGCAG 1 cut(s) 107
Bsh1236I CGCG 1 cut(s) 606
BshFI GGCC 5 cut(s) 67, 119, 311, 533, 986
BsiHKAI GWGCWC 1 cut(s) 999
BsiHKCI CYCGRG 1 cut(s) 76
BsiSI CCGG 6 cut(s) 25, 68, 77, 227, 291, 547
BslI CCNNNNNNNGG 3 cut(s) 190, 233, 297
BsmAI GTCTC 2 cut(s) 200, 203
BsmBI CGTCTC 1 cut(s) 200
BsnI GGCC 5 cut(s) 67, 119, 311, 533, 986
BsoBI CYCGRG 1 cut(s) 76
Bsp1286I GDGCHC 2 cut(s) 707, 999
Bsp143I GATC 3 cut(s) 84, 106, 735
Bsp19I CCATGG 1 cut(s) 666
BspACI CCGC 9 cut(s) 224, 247, 359, 544, 566, 606, 801, 896, 1000
BspANI GGCC 5 cut(s) 67, 119, 311, 533, 986
BspFNI CGCG 1 cut(s) 606
BspLI GGNNCC 1 cut(s) 183
BspPI GGATC 2 cut(s) 79, 114
BsrBI CCGCTC 1 cut(s) 898
BsrDI GCAATG 3 cut(s) 120, 819, 925
BsrFI RCCGGY 3 cut(s) 67, 226, 290
BsrI ACTGG 1 cut(s) 1053
BssAI RCCGGY 3 cut(s) 67, 226, 290
BssECI CCNNGG 3 cut(s) 76, 312, 666
BssMI GATC 3 cut(s) 84, 106, 735
BssNAI GTATAC 1 cut(s) 562
BssT1I CCWWGG 1 cut(s) 666
Bst1107I GTATAC 1 cut(s) 562
Bst4CI ACNGT 3 cut(s) 263, 316, 556
BstBAI YACGTR 1 cut(s) 136
BstC8I GCNNGC 6 cut(s) 65, 292, 342, 492, 826, 854
BstDEI CTNAG 2 cut(s) 473, 751
BstDSI CCRYGG 2 cut(s) 312, 666
BstF5I GGATG 1 cut(s) 391
BstFNI CGCG 1 cut(s) 606
BstHHI GCGC 1 cut(s) 647
BstKTI GATC 3 cut(s) 87, 109, 738
BstMAI GTCTC 2 cut(s) 200, 203
BstMBI GATC 3 cut(s) 84, 106, 735
BstMWI GCNNNNNNNGC 4 cut(s) 223, 317, 356, 825
BstNSI RCATGY 2 cut(s) 490, 771
BstSCI CCNGG 4 cut(s) 24, 75, 76, 546
BstSLI GKGCMC 2 cut(s) 707, 999
BstUI CGCG 1 cut(s) 606
BstV1I GCAGC 1 cut(s) 683
BstV2I GAAGAC 1 cut(s) 975
BstXI CCANNNNNNTGG 1 cut(s) 667
BstZ17I GTATAC 1 cut(s) 562
BsuI GTATCC 1 cut(s) 67
BsuRI GGCC 5 cut(s) 67, 119, 311, 533, 986
BtgI CCRYGG 2 cut(s) 312, 666
BtsCI GGATG 1 cut(s) 391
Cac8I GCNNGC 6 cut(s) 65, 292, 342, 492, 826, 854
CfoI GCGC 1 cut(s) 647
Cfr10I RCCGGY 3 cut(s) 67, 226, 290
Cfr13I GGNCC 3 cut(s) 118, 181, 531
Cfr9I CCCGGG 1 cut(s) 76
CseI GACGC 1 cut(s) 217
Csp6I GTAC 3 cut(s) 81, 220, 815
CviQI GTAC 3 cut(s) 81, 220, 815
DdeI CTNAG 2 cut(s) 473, 751
DpnI GATC 3 cut(s) 86, 108, 737
DpnII GATC 3 cut(s) 84, 106, 735
EaeI YGGCCR 1 cut(s) 984
EciI GGCGGA 1 cut(s) 374
Eco130I CCWWGG 1 cut(s) 666
Eco47I GGWCC 1 cut(s) 181
Eco57I CTGAAG 1 cut(s) 865
Eco72I CACGTG 1 cut(s) 136
Eco88I CYCGRG 1 cut(s) 76
EcoT14I CCWWGG 1 cut(s) 666
ErhI CCWWGG 1 cut(s) 666
Esp3I CGTCTC 1 cut(s) 200
FalI AAGNNNNNCTT 2 cut(s) 956, 988
FauI CCCGC 3 cut(s) 231, 573, 903
FbaI TGATCA 1 cut(s) 735
FblI GTMKAC 3 cut(s) 258, 561, 876
Fnu4HI GCNGC 1 cut(s) 672
FokI GGATG 1 cut(s) 398
Fsp4HI GCNGC 1 cut(s) 672
FspBI CTAG 1 cut(s) 408
GlaI GCGC 1 cut(s) 646
GluI GCNGC 1 cut(s) 672
HaeIII GGCC 5 cut(s) 67, 119, 311, 533, 986
HapII CCGG 6 cut(s) 25, 68, 77, 227, 291, 547
HgaI GACGC 1 cut(s) 217
HhaI GCGC 1 cut(s) 647
Hin6I GCGC 1 cut(s) 645
HinP1I GCGC 1 cut(s) 645
HincII GTYRAC 3 cut(s) 259, 375, 877
HindII GTYRAC 3 cut(s) 259, 375, 877
HinfI GANTC 5 cut(s) 404, 429, 538, 609, 1012
HpaII CCGG 6 cut(s) 25, 68, 77, 227, 291, 547
HphI GGTGA 6 cut(s) 82, 241, 275, 316, 413, 533
Hpy166II GTNNAC 7 cut(s) 73, 133, 259, 375, 562, 877, 997
Hpy188I TCNGA 3 cut(s) 205, 240, 977
Hpy188III TCNNGA 3 cut(s) 104, 433, 883
Hpy8I GTNNAC 7 cut(s) 73, 133, 259, 375, 562, 877, 997
Hpy99I CGWCG 2 cut(s) 263, 560
HpyAV CCTTC 4 cut(s) 301, 443, 579, 1017
HpyCH4III ACNGT 3 cut(s) 263, 316, 556
HpyCH4IV ACGT 1 cut(s) 135
HpyCH4V TGCA 6 cut(s) 113, 124, 490, 779, 928, 997
HpyF10VI GCNNNNNNNGC 4 cut(s) 223, 317, 356, 825
HpyF3I CTNAG 2 cut(s) 473, 751
HpySE526I ACGT 1 cut(s) 135
HspAI GCGC 1 cut(s) 645
KroI GCCGGC 1 cut(s) 290
KroNI GCCGGC 1 cut(s) 292
Ksp22I TGATCA 1 cut(s) 735
Kzo9I GATC 3 cut(s) 84, 106, 735
LmnI GCTCC 1 cut(s) 897
Lsp1109I GCAGC 1 cut(s) 683
LweI GCATC 1 cut(s) 277
MaeI CTAG 1 cut(s) 408
MaeII ACGT 1 cut(s) 135
MaeIII GTNAC 2 cut(s) 229, 281
MalI GATC 3 cut(s) 86, 108, 737
MbiI CCGCTC 1 cut(s) 898
MboI GATC 3 cut(s) 84, 106, 735
MboII GAAGA 3 cut(s) 898, 971, 980
MhlI GDGCHC 2 cut(s) 707, 999
MlsI TGGCCA 1 cut(s) 986
MluCI AATT 2 cut(s) 443, 719
MluNI TGGCCA 1 cut(s) 986
MlyI GAGTC 2 cut(s) 603, 1021
MmeI TCCRAC 1 cut(s) 218
Mox20I TGGCCA 1 cut(s) 986
MroNI GCCGGC 1 cut(s) 290
MscI TGGCCA 1 cut(s) 986
MseI TTAA 1 cut(s) 686
MslI CAYNNNNRTG 1 cut(s) 1002
Msp20I TGGCCA 1 cut(s) 986
MspI CCGG 6 cut(s) 25, 68, 77, 227, 291, 547
MspR9I CCNGG 4 cut(s) 26, 77, 78, 548
MvnI CGCG 1 cut(s) 606
MwoI GCNNNNNNNGC 4 cut(s) 223, 317, 356, 825
NaeI GCCGGC 1 cut(s) 292
NciI CCSGG 4 cut(s) 26, 77, 78, 548
NcoI CCATGG 1 cut(s) 666
NdeII GATC 3 cut(s) 84, 106, 735
NgoMIV GCCGGC 1 cut(s) 290
NlaIV GGNNCC 1 cut(s) 183
NmeAIII GCCGAG 1 cut(s) 559
NmuCI GTSAC 1 cut(s) 229
NspI RCATGY 2 cut(s) 490, 771
PcsI WCGNNNNNNNCGW 1 cut(s) 291
PdiI GCCGGC 1 cut(s) 292
PfeI GAWTC 3 cut(s) 404, 429, 538
PkrI GCNGC 1 cut(s) 673
PleI GAGTC 2 cut(s) 603, 1020
PmaCI CACGTG 1 cut(s) 136
PmlI CACGTG 1 cut(s) 136
PpsI GAGTC 2 cut(s) 603, 1020
Ppu21I YACGTR 1 cut(s) 136
PshBI ATTAAT 1 cut(s) 686
PspCI CACGTG 1 cut(s) 136
PspN4I GGNNCC 1 cut(s) 183
PspPI GGNCC 3 cut(s) 118, 181, 531
RsaI GTAC 3 cut(s) 82, 221, 816
RsaNI GTAC 3 cut(s) 81, 220, 815
RseI CAYNNNNRTG 1 cut(s) 1002
SalI GTCGAC 2 cut(s) 257, 875
SaqAI TTAA 1 cut(s) 686
SatI GCNGC 1 cut(s) 672
Sau3AI GATC 3 cut(s) 84, 106, 735
Sau96I GGNCC 3 cut(s) 118, 181, 531
SchI GAGTC 2 cut(s) 603, 1021
ScrFI CCNGG 4 cut(s) 26, 77, 78, 548
SduI GDGCHC 2 cut(s) 707, 999
SetI ASST 8 cut(s) 48, 138, 162, 258, 276, 371, 894, 952
SfaNI GCATC 1 cut(s) 277
SgrAI CRCCGGYG 1 cut(s) 226
SinI GGWCC 1 cut(s) 181
SmaI CCCGGG 1 cut(s) 78
SmiMI CAYNNNNRTG 1 cut(s) 1002
Sse9I AATT 2 cut(s) 443, 719
SsiI CCGC 9 cut(s) 224, 247, 359, 544, 566, 606, 801, 896, 1000
SspMI CTAG 1 cut(s) 408
StyD4I CCNGG 4 cut(s) 24, 75, 76, 546
StyI CCWWGG 1 cut(s) 666
TaaI ACNGT 3 cut(s) 263, 316, 556
TaiI ACGT 1 cut(s) 138
TaqI TCGA 4 cut(s) 258, 587, 876, 1010
TasI AATT 2 cut(s) 443, 719
TfiI GAWTC 3 cut(s) 404, 429, 538
Tru1I TTAA 1 cut(s) 686
Tru9I TTAA 1 cut(s) 686
TseFI GTSAC 1 cut(s) 229
TseI GCWGC 1 cut(s) 671
Tsp45I GTSAC 1 cut(s) 229
TspDTI ATGAA 6 cut(s) 20, 402, 456, 744, 845, 933
TspGWI ACGGA 1 cut(s) 26
TspMI CCCGGG 1 cut(s) 76
VneI GTGCAC 1 cut(s) 995
VpaK11BI GGWCC 1 cut(s) 181
VspI ATTAAT 1 cut(s) 686
XapI RAATTY 2 cut(s) 443, 719
XceI RCATGY 2 cut(s) 490, 771
XmaI CCCGGG 1 cut(s) 76
XmiI GTMKAC 3 cut(s) 258, 561, 876
XspI CTAG 1 cut(s) 408
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.