Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0004543

Physical Location & Seq

Genomic Coordinates Forward (+)

47495257 .. 47496203

Gene Structure 947 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000025670

Sequence Viewer

CDS Protein Promoter (2k)

Length: 633 bp

ATGGCAGCACAGACCCCATTAGTTTTGAAGAAAATGGGCACAACCACTTTCAAATTTTCCAATGAAGTGATCAAGCAAAGCCTCTTAGAAATCCACCAAACGTGCCCTATTGCAACCCCGTTTGATTTGTTGGCCGCACTCTTTTGGGCACGCATTGCTTGCTTGAAGCACCCGAAAAGCGAAAGCAAGCACTCCTTCTCCATTTGTGTCGACCTTAGGAAGAAGCTTCCGCTTTCTCATAGGCACTTCATTTTTTGTTGCTTTTCATTACCTTATGTGAAAGAAAAGGATCGGAAAACTTGGGAGATGTGGTCAGAGCTGTGCACCGCCATGATGTACGGCCTTGAGTTGACATGTATGAGCATGGAGCAAATGGTTGACTTTCTTGGGATTACTGGGAATAAGCCGTTGATGTATACAGCTGTGTTTGATAAGGAGAACATGCCCGTACCCGTGTCATATCATGTTGGAAATGTGGAAGGGGAAGGTTTGATAGTGGTGATGCCATCTACGGAAGGAGGGCTGGCGAGGATGGTTATGGTGACATTGTCGGAGGAGGAACTAGAGCAGCTATGTCAGGATGAAGCTATTTCGAGCTTAAACCTAATAATGGTCATAAGTGGGATGAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Transferase

Protein Analysis

211

Amino Acids

23.75

Weight (kDa)

6.08

Isoelectric Point (pI)

43.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004543)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g03080 FvH4_6g03120
malus_domestica	MD12G1238900.v1.1
prunus_persica	Prupe.6G341800_v2.0.a1
pyrus_communis	pycom12g21960
rosa_chinensis	RchiOBHm_Chr3g0451351 RchiOBHm_Chr5g0046431 RchiOBHm_Chr5g0046531
rosa_laevigata	RLG00000025665 RLG00000025670
rosa_multiflora	Rmu_sc0002575.1_g000008 Rmu_sc0003878.1_g000045 Rmu_sc0003878.1_g000046 Rmu_sc0012229.1_g000007
rosa_roxburghii	Rroxscaffold_163G00450830 Rroxscaffold_164G00436560 Rroxscaffold_1G00034900 Rroxscaffold_3G00232570 Rroxscaffold_6G00428770
rosa_rugosa	Rorug02G0633200 Rorug05G0229400
rosa_samantha	Rh3AG036200 Rh3BG036700 Rh3CG035300 Rh3DG036200 Rh5AG309300 Rh5BG317500 Rh5BG318000 Rh5DG327800 Rh5DG328200
rosa_wichuraiana	Rw0G015940 Rw3G002670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	210, 416
AciI	CCGC	3 cut(s)	135, 230, 327
AclWI	GGATC	1 cut(s)	297
AcoI	YGGCCR	1 cut(s)	132
AcsI	RAATTY	1 cut(s)	53
AfaI	GTAC	2 cut(s)	338, 450
AfiI	CCNNNNNNNGG	1 cut(s)	610
AflIII	ACRYGT	1 cut(s)	353
AgsI	TTSAA	3 cut(s)	28, 52, 166
AluBI	AGCT	6 cut(s)	226, 319, 422, 571, 587, 597
AluI	AGCT	6 cut(s)	226, 319, 422, 571, 587, 597
Alw21I	GWGCWC	1 cut(s)	326
Alw44I	GTGCAC	1 cut(s)	322
AlwI	GGATC	1 cut(s)	297
AoxI	GGCC	2 cut(s)	132, 340
ApaLI	GTGCAC	1 cut(s)	322
ApeKI	GCWGC	2 cut(s)	5, 568
ApoI	RAATTY	1 cut(s)	53
AsuHPI	GGTGA	2 cut(s)	511, 553
AxyI	CCTNAGG	1 cut(s)	215
BaeGI	GKGCMC	4 cut(s)	41, 107, 151, 326
Bbv12I	GWGCWC	1 cut(s)	326
BbvI	GCAGC	2 cut(s)	17, 580
BccI	CCATC	2 cut(s)	514, 526
BceAI	ACGGC	2 cut(s)	355, 391
BclI	TGATCA	1 cut(s)	69
BfaI	CTAG	1 cut(s)	563
BisI	GCNGC	3 cut(s)	6, 135, 569
BlsI	GCNGC	3 cut(s)	7, 136, 570
BmrI	ACTGGG	1 cut(s)	405
BmsI	GCATC	1 cut(s)	492
BmuI	ACTGGG	1 cut(s)	405
BpuEI	CTTGAG	1 cut(s)	365
BsaXI	ACNNNNNCTCC	4 cut(s)	182, 212, 296, 326
Bsc4I	CCNNNNNNNGG	1 cut(s)	610
Bse1I	ACTGG	1 cut(s)	400
Bse21I	CCTNAGG	1 cut(s)	215
Bse3DI	GCAATG	1 cut(s)	153
BseGI	GGATG	3 cut(s)	537, 586, 630
BseLI	CCNNNNNNNGG	1 cut(s)	610
BseMI	GCAATG	1 cut(s)	153
BseNI	ACTGG	1 cut(s)	400
BseRI	GAGGAG	1 cut(s)	569
BseSI	GKGCMC	4 cut(s)	41, 107, 151, 326
BseXI	GCAGC	2 cut(s)	17, 580
BshFI	GGCC	2 cut(s)	134, 342
BsiHKAI	GWGCWC	1 cut(s)	326
BslI	CCNNNNNNNGG	1 cut(s)	610
BsnI	GGCC	2 cut(s)	134, 342
Bsp1286I	GDGCHC	4 cut(s)	41, 107, 151, 326
Bsp143I	GATC	2 cut(s)	69, 289
BspACI	CCGC	3 cut(s)	135, 230, 327
BspANI	GGCC	2 cut(s)	134, 342
BspPI	GGATC	1 cut(s)	297
BsrDI	GCAATG	1 cut(s)	153
BsrI	ACTGG	1 cut(s)	400
BssMI	GATC	2 cut(s)	69, 289
BssNAI	GTATAC	1 cut(s)	417
Bst1107I	GTATAC	1 cut(s)	417
BstAPI	GCANNNNNTGC	2 cut(s)	155, 159
BstC8I	GCNNGC	4 cut(s)	151, 160, 188, 525
BstDEI	CTNAG	2 cut(s)	85, 215
BstF5I	GGATG	3 cut(s)	537, 586, 630
BstKTI	GATC	2 cut(s)	72, 292
BstMBI	GATC	2 cut(s)	69, 289
BstMWI	GCNNNNNNNGC	2 cut(s)	155, 159
BstNSI	RCATGY	2 cut(s)	357, 445
BstSLI	GKGCMC	4 cut(s)	41, 107, 151, 326
BstV1I	GCAGC	2 cut(s)	17, 580
BstZ17I	GTATAC	1 cut(s)	417
Bsu36I	CCTNAGG	1 cut(s)	215
BsuRI	GGCC	2 cut(s)	134, 342
BtsCI	GGATG	3 cut(s)	537, 586, 630
Cac8I	GCNNGC	4 cut(s)	151, 160, 188, 525
Csp6I	GTAC	2 cut(s)	337, 449
CviAII	CATG	5 cut(s)	331, 354, 364, 442, 464
CviQI	GTAC	2 cut(s)	337, 449
DdeI	CTNAG	2 cut(s)	85, 215
DpnI	GATC	2 cut(s)	71, 291
DpnII	GATC	2 cut(s)	69, 289
EaeI	YGGCCR	1 cut(s)	132
Eco81I	CCTNAGG	1 cut(s)	215
FaeI	CATG	5 cut(s)	334, 357, 367, 445, 467
FalI	AAGNNNNNCTT	2 cut(s)	179, 211
FatI	CATG	5 cut(s)	330, 353, 363, 441, 463
FbaI	TGATCA	1 cut(s)	69
FblI	GTMKAC	2 cut(s)	210, 416
Fnu4HI	GCNGC	3 cut(s)	6, 135, 569
FokI	GGATG	2 cut(s)	544, 593
Fsp4HI	GCNGC	3 cut(s)	6, 135, 569
FspBI	CTAG	1 cut(s)	563
GluI	GCNGC	3 cut(s)	6, 135, 569
HaeIII	GGCC	2 cut(s)	134, 342
Hin1II	CATG	5 cut(s)	334, 357, 367, 445, 467
HincII	GTYRAC	3 cut(s)	211, 351, 379
HindII	GTYRAC	3 cut(s)	211, 351, 379
HindIII	AAGCTT	1 cut(s)	224
HphI	GGTGA	2 cut(s)	511, 553
Hpy166II	GTNNAC	5 cut(s)	211, 324, 351, 379, 417
Hpy188I	TCNGA	3 cut(s)	294, 316, 553
Hpy188III	TCNNGA	1 cut(s)	578
Hpy8I	GTNNAC	5 cut(s)	211, 324, 351, 379, 417
HpyAV	CCTTC	4 cut(s)	205, 473, 479, 509
HpyCH4IV	ACGT	1 cut(s)	101
HpyCH4V	TGCA	2 cut(s)	113, 324
HpyF10VI	GCNNNNNNNGC	2 cut(s)	155, 159
HpyF3I	CTNAG	2 cut(s)	85, 215
HpySE526I	ACGT	1 cut(s)	101
Hsp92II	CATG	5 cut(s)	334, 357, 367, 445, 467
Ksp22I	TGATCA	1 cut(s)	69
Kzo9I	GATC	2 cut(s)	69, 289
LmnI	GCTCC	1 cut(s)	367
LpnPI	CCDG	3 cut(s)	381, 509, 563
Lsp1109I	GCAGC	2 cut(s)	17, 580
LweI	GCATC	1 cut(s)	492
MaeI	CTAG	1 cut(s)	563
MaeII	ACGT	1 cut(s)	101
MaeIII	GTNAC	1 cut(s)	541
MalI	GATC	2 cut(s)	71, 291
MboI	GATC	2 cut(s)	69, 289
MboII	GAAGA	2 cut(s)	40, 232
MhlI	GDGCHC	4 cut(s)	41, 107, 151, 326
MluCI	AATT	1 cut(s)	53
MmeI	TCCRAC	2 cut(s)	448, 531
MnlI	CCTC	5 cut(s)	92, 512, 522, 547, 550
MseI	TTAA	1 cut(s)	599
MslI	CAYNNNNRTG	1 cut(s)	329
MspA1I	CMGCKG	1 cut(s)	422
MwoI	GCNNNNNNNGC	2 cut(s)	155, 159
NdeII	GATC	2 cut(s)	69, 289
NlaIII	CATG	5 cut(s)	334, 357, 367, 445, 467
NmuCI	GTSAC	1 cut(s)	541
NspI	RCATGY	2 cut(s)	357, 445
PciI	ACATGT	1 cut(s)	353
PflFI	GACNNNGTC	1 cut(s)	547
PkrI	GCNGC	3 cut(s)	7, 136, 570
PscI	ACATGT	1 cut(s)	353
PsyI	GACNNNGTC	1 cut(s)	547
PvuII	CAGCTG	1 cut(s)	422
RsaI	GTAC	2 cut(s)	338, 450
RsaNI	GTAC	2 cut(s)	337, 449
RseI	CAYNNNNRTG	1 cut(s)	329
SalI	GTCGAC	1 cut(s)	209
SaqAI	TTAA	1 cut(s)	599
SatI	GCNGC	3 cut(s)	6, 135, 569
Sau3AI	GATC	2 cut(s)	69, 289
SduI	GDGCHC	4 cut(s)	41, 107, 151, 326
SfaNI	GCATC	1 cut(s)	492
SmiMI	CAYNNNNRTG	1 cut(s)	329
SmlI	CTYRAG	1 cut(s)	344
SmoI	CTYRAG	1 cut(s)	344
Sse9I	AATT	1 cut(s)	53
SsiI	CCGC	3 cut(s)	135, 230, 327
SspMI	CTAG	1 cut(s)	563
TaiI	ACGT	1 cut(s)	104
TaqI	TCGA	2 cut(s)	210, 593
TasI	AATT	1 cut(s)	53
TauI	GCSGC	1 cut(s)	137
Tru1I	TTAA	1 cut(s)	599
Tru9I	TTAA	1 cut(s)	599
TseFI	GTSAC	1 cut(s)	541
TseI	GCWGC	2 cut(s)	5, 568
Tsp45I	GTSAC	1 cut(s)	541
TspDTI	ATGAA	4 cut(s)	78, 238, 255, 597
TspGWI	ACGGA	1 cut(s)	527
Tth111I	GACNNNGTC	1 cut(s)	547
VneI	GTGCAC	1 cut(s)	322
XapI	RAATTY	1 cut(s)	53
XceI	RCATGY	2 cut(s)	357, 445
XmiI	GTMKAC	2 cut(s)	210, 416
XspI	CTAG	1 cut(s)	563

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.