Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0004543

Physical Location & Seq

Genomic Coordinates Forward (+)

74754248 .. 74756798

Gene Structure 2551 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0633200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 822 bp

ATGGCGTCGTGGAATTCGATTCAGCTGGAGATCACATACAGAGTTCTGGGGTGGTTGACTTTCACGTTTTGGGCCGTCGGCTTCTACCCTCAAGTGTTCTTGAATTTCCGTCGAAAAAGTGTTGTGGGGCTGAGCATCGATTTTGTGGTGCTGAATTGGACGAAACACTCGTCATATCTCATTTACAACGCCTCTCTTTACTTCAGCTCCGCCGTTCAGAAGCAGTACTTTGAAAAGTACGGTTTCGGAGAGATGATACCTGTAGCTGCAAATGATGTTGCTTTCTCTGTTCATGCCGTTTTTGTAACATCAATTATCCTTTTCCAAATTGCAATCTATGAACGAGGAAGTCAGAGAGTATCCAAGATTGCCATTGGAATCGTCTTTGGTGTGTGGCTATTTGCTGCAGTTTGTTTCTTGGTGGCTCTGCCAACTCATTCTTGGCTTTGGCTCATCTCTATCTTCAACTCAATTCAAGTTTTTATGACAGTCATCAAATATACTCCCCAGGCATACATGAACTTCATAAGAAAGAGCACAGATGGATTAAGTATTTTCTTTATTCTACTTGATCTTTCGGGAGGAGTGGGAAGTTATGCACAAATGGCCGTGCAGTCTATTGATCAAGATTCTTGGGTGAACTTTTATGGAAACATAGGGAAGACACTGCTATCTTTGATATGTGTATCATTTGATCTTCTTTTCATTTGCCAACATTATGTTCTGTATCCTTCCAAGAAGGCATTGATATCTCCTAAAATGATTACCGCCAGCAAGGAGGACTTGGAGCCCCTTGTCAGTTCCGATAATCACCAAGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Transferase

Protein Analysis

273

Amino Acids

31.01

Weight (kDa)

8.65

Isoelectric Point (pI)

32.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PQ-loop	PF04193	14 - 69	8.2e-16	PQ loop repeat
PQ-loop	PF04193	152 - 208	7.4e-15	PQ loop repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004543)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g03080 FvH4_6g03120
malus_domestica	MD12G1238900.v1.1
prunus_persica	Prupe.6G341800_v2.0.a1
pyrus_communis	pycom12g21960
rosa_chinensis	RchiOBHm_Chr3g0451351 RchiOBHm_Chr5g0046431 RchiOBHm_Chr5g0046531
rosa_laevigata	RLG00000025665 RLG00000025670
rosa_multiflora	Rmu_sc0002575.1_g000008 Rmu_sc0003878.1_g000045 Rmu_sc0003878.1_g000046 Rmu_sc0012229.1_g000007
rosa_roxburghii	Rroxscaffold_163G00450830 Rroxscaffold_164G00436560 Rroxscaffold_1G00034900 Rroxscaffold_3G00232570 Rroxscaffold_6G00428770
rosa_rugosa	Rorug02G0633200 Rorug05G0229400
rosa_samantha	Rh3AG036200 Rh3BG036700 Rh3CG035300 Rh3DG036200 Rh5AG309300 Rh5BG317500 Rh5BG318000 Rh5DG327800 Rh5DG328200
rosa_wichuraiana	Rw0G015940 Rw3G002670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	210, 768
AcoI	YGGCCR	1 cut(s)	606
AcsI	RAATTY	2 cut(s)	13, 103
AcuI	CTGAAG	1 cut(s)	187
AcyI	GRCGYC	1 cut(s)	5
AdeI	CACNNNGTG	1 cut(s)	817
AfaI	GTAC	2 cut(s)	227, 239
AgsI	TTSAA	4 cut(s)	103, 233, 466, 476
AjnI	CCWGG	1 cut(s)	507
AjuI	GAANNNNNNNTTGG	2 cut(s)	705, 737
AluBI	AGCT	3 cut(s)	25, 207, 266
AluI	AGCT	3 cut(s)	25, 207, 266
Alw21I	GWGCWC	1 cut(s)	539
AoxI	GGCC	2 cut(s)	72, 606
ApeKI	GCWGC	2 cut(s)	266, 404
ApoI	RAATTY	2 cut(s)	13, 103
ArsI	GACNNNNNNTTYG	2 cut(s)	155, 187
AspS9I	GGNCC	1 cut(s)	72
AsuHPI	GGTGA	2 cut(s)	649, 803
BanII	GRGCYC	1 cut(s)	792
BbsI	GAAGAC	1 cut(s)	668
Bbv12I	GWGCWC	1 cut(s)	539
BbvI	GCAGC	2 cut(s)	253, 391
BccI	CCATC	1 cut(s)	536
BceAI	ACGGC	4 cut(s)	59, 197, 281, 593
BciT130I	CCWGG	1 cut(s)	509
BciVI	GTATCC	2 cut(s)	370, 738
BclI	TGATCA	1 cut(s)	622
BfmI	CTRYAG	2 cut(s)	261, 405
BfuI	GTATCC	2 cut(s)	370, 738
BisI	GCNGC	2 cut(s)	267, 405
BlpI	GCTNAGC	1 cut(s)	131
BlsI	GCNGC	2 cut(s)	268, 406
BmcAI	AGTACT	1 cut(s)	227
Bme1390I	CCNGG	1 cut(s)	509
BmgT120I	GGNCC	1 cut(s)	72
BmiI	GGNNCC	1 cut(s)	789
BmrFI	CCNGG	1 cut(s)	509
BmsI	GCATC	1 cut(s)	144
BpiI	GAAGAC	1 cut(s)	668
BpmI	CTGGAG	1 cut(s)	47
Bpu1102I	GCTNAGC	1 cut(s)	131
BpuEI	CTTGAG	1 cut(s)	75
Bsa29I	ATCGAT	1 cut(s)	138
BsaHI	GRCGYC	1 cut(s)	5
BsaJI	CCNNGG	1 cut(s)	507
BsaXI	ACNNNNNCTCC	2 cut(s)	191, 221
BseBI	CCWGG	1 cut(s)	509
BseCI	ATCGAT	1 cut(s)	138
BseDI	CCNNGG	1 cut(s)	507
BseMII	CTCAG	1 cut(s)	122
BseRI	GAGGAG	1 cut(s)	597
BseXI	GCAGC	2 cut(s)	253, 391
BsgI	GTGCAG	1 cut(s)	632
BshFI	GGCC	2 cut(s)	74, 608
BshVI	ATCGAT	1 cut(s)	138
BsiHKAI	GWGCWC	1 cut(s)	539
BsnI	GGCC	2 cut(s)	74, 608
Bsp1286I	GDGCHC	2 cut(s)	539, 792
Bsp143I	GATC	4 cut(s)	30, 571, 622, 694
Bsp1720I	GCTNAGC	1 cut(s)	131
BspACI	CCGC	2 cut(s)	210, 768
BspANI	GGCC	2 cut(s)	74, 608
BspCNI	CTCAG	1 cut(s)	123
BspDI	ATCGAT	1 cut(s)	138
BspLI	GGNNCC	1 cut(s)	789
BspMAI	CTGCAG	1 cut(s)	409
BssECI	CCNNGG	1 cut(s)	507
BssMI	GATC	4 cut(s)	30, 571, 622, 694
BssNI	GRCGYC	1 cut(s)	5
Bst2UI	CCWGG	1 cut(s)	509
Bst4CI	ACNGT	2 cut(s)	242, 490
BstACI	GRCGYC	1 cut(s)	5
BstC8I	GCNNGC	1 cut(s)	772
BstDEI	CTNAG	1 cut(s)	131
BstKTI	GATC	4 cut(s)	33, 574, 625, 697
BstMBI	GATC	4 cut(s)	30, 571, 622, 694
BstMWI	GCNNNNNNNGC	1 cut(s)	605
BstNI	CCWGG	1 cut(s)	509
BstSCI	CCNGG	1 cut(s)	507
BstSFI	CTRYAG	2 cut(s)	261, 405
BstV1I	GCAGC	2 cut(s)	253, 391
BstV2I	GAAGAC	1 cut(s)	668
Bsu15I	ATCGAT	1 cut(s)	138
BsuI	GTATCC	2 cut(s)	370, 738
BsuRI	GGCC	2 cut(s)	74, 608
BsuTUI	ATCGAT	1 cut(s)	138
BtsI	GCAGTG	1 cut(s)	665
BtsIMutI	CAGTG	1 cut(s)	665
Cac8I	GCNNGC	1 cut(s)	772
Cfr13I	GGNCC	1 cut(s)	72
ClaI	ATCGAT	1 cut(s)	138
Csp6I	GTAC	2 cut(s)	226, 238
CviAII	CATG	2 cut(s)	293, 517
CviQI	GTAC	2 cut(s)	226, 238
DdeI	CTNAG	1 cut(s)	131
DpnI	GATC	4 cut(s)	32, 573, 624, 696
DpnII	GATC	4 cut(s)	30, 571, 622, 694
DraIII	CACNNNGTG	1 cut(s)	817
EaeI	YGGCCR	1 cut(s)	606
EciI	GGCGGA	1 cut(s)	199
Eco24I	GRGCYC	1 cut(s)	792
Eco32I	GATATC	1 cut(s)	750
Eco57I	CTGAAG	1 cut(s)	187
EcoRI	GAATTC	1 cut(s)	13
EcoRII	CCWGG	1 cut(s)	507
EcoRV	GATATC	1 cut(s)	750
EcoT38I	GRGCYC	1 cut(s)	792
FaeI	CATG	2 cut(s)	296, 520
FalI	AAGNNNNNCTT	4 cut(s)	212, 244, 767, 799
FatI	CATG	2 cut(s)	292, 516
FbaI	TGATCA	1 cut(s)	622
Fnu4HI	GCNGC	2 cut(s)	267, 405
FriOI	GRGCYC	1 cut(s)	792
Fsp4HI	GCNGC	2 cut(s)	267, 405
GluI	GCNGC	2 cut(s)	267, 405
GsuI	CTGGAG	1 cut(s)	47
HaeIII	GGCC	2 cut(s)	74, 608
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	2 cut(s)	296, 520
HincII	GTYRAC	1 cut(s)	57
HindII	GTYRAC	1 cut(s)	57
HinfI	GANTC	3 cut(s)	19, 378, 629
HphI	GGTGA	2 cut(s)	649, 803
Hpy166II	GTNNAC	2 cut(s)	57, 640
Hpy188I	TCNGA	4 cut(s)	219, 248, 354, 805
Hpy188III	TCNNGA	3 cut(s)	100, 579, 626
Hpy8I	GTNNAC	2 cut(s)	57, 640
Hpy99I	CGWCG	3 cut(s)	10, 80, 114
HpyAV	CCTTC	2 cut(s)	733, 741
HpyCH4III	ACNGT	2 cut(s)	242, 490
HpyCH4IV	ACGT	1 cut(s)	65
HpyCH4V	TGCA	5 cut(s)	269, 332, 407, 599, 613
HpyF10VI	GCNNNNNNNGC	1 cut(s)	605
HpyF3I	CTNAG	1 cut(s)	131
HpySE526I	ACGT	1 cut(s)	65
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	2 cut(s)	296, 520
Ksp22I	TGATCA	1 cut(s)	622
Kzo9I	GATC	4 cut(s)	30, 571, 622, 694
LmnI	GCTCC	2 cut(s)	212, 787
LpnPI	CCDG	6 cut(s)	11, 32, 273, 494, 521, 784
Lsp1109I	GCAGC	2 cut(s)	253, 391
LweI	GCATC	1 cut(s)	144
MaeII	ACGT	1 cut(s)	65
MaeIII	GTNAC	1 cut(s)	304
MalI	GATC	4 cut(s)	32, 573, 624, 696
MboI	GATC	4 cut(s)	30, 571, 622, 694
MboII	GAAGA	3 cut(s)	454, 673, 689
MhlI	GDGCHC	2 cut(s)	539, 792
MluCI	AATT	6 cut(s)	13, 103, 154, 312, 327, 471
MnlI	CCTC	5 cut(s)	99, 202, 338, 575, 772
MseI	TTAA	1 cut(s)	548
MspA1I	CMGCKG	1 cut(s)	25
MspR9I	CCNGG	1 cut(s)	509
MvaI	CCWGG	1 cut(s)	509
MwoI	GCNNNNNNNGC	1 cut(s)	605
NdeII	GATC	4 cut(s)	30, 571, 622, 694
NlaIII	CATG	2 cut(s)	296, 520
NlaIV	GGNNCC	1 cut(s)	789
PcsI	WCGNNNNNNNCGW	2 cut(s)	14, 167
PfeI	GAWTC	3 cut(s)	19, 378, 629
PkrI	GCNGC	2 cut(s)	268, 406
Psp6I	CCWGG	1 cut(s)	507
PspGI	CCWGG	1 cut(s)	507
PspN4I	GGNNCC	1 cut(s)	789
PspPI	GGNCC	1 cut(s)	72
PstI	CTGCAG	1 cut(s)	409
PvuII	CAGCTG	1 cut(s)	25
RsaI	GTAC	2 cut(s)	227, 239
RsaNI	GTAC	2 cut(s)	226, 238
SaqAI	TTAA	1 cut(s)	548
SatI	GCNGC	2 cut(s)	267, 405
Sau3AI	GATC	4 cut(s)	30, 571, 622, 694
Sau96I	GGNCC	1 cut(s)	72
ScaI	AGTACT	1 cut(s)	227
ScrFI	CCNGG	1 cut(s)	509
SduI	GDGCHC	2 cut(s)	539, 792
SetI	ASST	5 cut(s)	27, 68, 209, 262, 268
SfaNI	GCATC	1 cut(s)	144
SfcI	CTRYAG	2 cut(s)	261, 405
SmlI	CTYRAG	1 cut(s)	90
SmoI	CTYRAG	1 cut(s)	90
Sse9I	AATT	6 cut(s)	13, 103, 154, 312, 327, 471
SsiI	CCGC	2 cut(s)	210, 768
StyD4I	CCNGG	1 cut(s)	507
TaaI	ACNGT	2 cut(s)	242, 490
TaiI	ACGT	1 cut(s)	68
TaqI	TCGA	3 cut(s)	17, 112, 138
TasI	AATT	6 cut(s)	13, 103, 154, 312, 327, 471
TatI	WGTACW	1 cut(s)	225
TfiI	GAWTC	3 cut(s)	19, 378, 629
Tru1I	TTAA	1 cut(s)	548
Tru9I	TTAA	1 cut(s)	548
TscAI	CASTG	1 cut(s)	672
TseI	GCWGC	2 cut(s)	266, 404
TspDTI	ATGAA	5 cut(s)	281, 354, 514, 533, 694
TspGWI	ACGGA	1 cut(s)	98
TspRI	CASTG	1 cut(s)	672
XapI	RAATTY	2 cut(s)	13, 103
XcmI	CCANNNNNNNNNTGG	1 cut(s)	438
ZrmI	AGTACT	1 cut(s)	227

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.