Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003878.1

Orthogroup ID

OG0004543

Physical Location & Seq

Genomic Coordinates Reverse (-)

207320 .. 208297

Gene Structure 978 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003878.1_g000045.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 978 bp

atggagcagataaatgaatttgaaggaggaggagtggctattggactaagttgctctcacatgcaagcagacccaacttgtgtgaccctactcatcaagtcatgggctgagactcaccgccgggaacccgtcgtacacccgccttcctttgacgacttatcgaattcaccactcactcgcggactgaacattcacaacacaaacacaaaatcatcacgcggttattacgaagccaagtccatggcagcacagaccccattaatactaaagaaaatgggcacagccactttcaaattttccaatgaagtgatcaagcaaagcctcttagaaatccaccaaacatgctctgttgcaaccccgtttgatttgctggccgcactcttttggacacgcattgctcgcttaaagcacccgaaaagcaaaagcaagcactccctctccatttgtgtagatttcaggaagaagcttccgctctcttatgggtactacggtaatgccttacatttttcgttgctttcattacctgatgtggaagaaaaggaagacttcagagatgtggcagaagctgtgcagtaccatgtgtcgagtcagggcgaaggggagttttggtctgctttagactggtttgaatcacgaaaggaagagggaggtcagtttggggcaccttttagaatgtacggccccgagttgacatgtatgagcatggagcacatggttgactttcctgggattactgggaataagctgttgataaatacagctgtgtttgataaggagaacaggcccgtacacgtgtcatatcatgttggaaatgtggaaggggaagggttgataatggtgatgccatctctggaaggagggctggcaaggatggttacagtgacattgccggaggaggaactggagcaattatgtcaggatgaagctatttcgagcttaaacccaataatggtcataagtgggatgagacgagcataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Transferase

Protein Analysis

325

Amino Acids

36.29

Weight (kDa)

5.76

Isoelectric Point (pI)

38.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004543)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g03080 FvH4_6g03120
malus_domestica	MD12G1238900.v1.1
prunus_persica	Prupe.6G341800_v2.0.a1
pyrus_communis	pycom12g21960
rosa_chinensis	RchiOBHm_Chr3g0451351 RchiOBHm_Chr5g0046431 RchiOBHm_Chr5g0046531
rosa_laevigata	RLG00000025665 RLG00000025670
rosa_multiflora	Rmu_sc0002575.1_g000008 Rmu_sc0003878.1_g000045 Rmu_sc0003878.1_g000046 Rmu_sc0012229.1_g000007
rosa_roxburghii	Rroxscaffold_163G00450830 Rroxscaffold_164G00436560 Rroxscaffold_1G00034900 Rroxscaffold_3G00232570 Rroxscaffold_6G00428770
rosa_rugosa	Rorug02G0633200 Rorug05G0229400
rosa_samantha	Rh3AG036200 Rh3BG036700 Rh3CG035300 Rh3DG036200 Rh5AG309300 Rh5BG317500 Rh5BG318000 Rh5DG327800 Rh5DG328200
rosa_wichuraiana	Rw0G015940 Rw3G002670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	661
AccBSI	CCGCTC	1 cut(s)	472
AccII	CGCG	2 cut(s)	180, 219
AciI	CCGC	6 cut(s)	118, 140, 180, 219, 375, 470
AcoI	YGGCCR	1 cut(s)	372
AcsI	RAATTY	3 cut(s)	17, 163, 293
AcuI	CTGAAG	1 cut(s)	532
AcvI	CACGTG	1 cut(s)	793
AfaI	GTAC	5 cut(s)	135, 485, 575, 677, 789
AfiI	CCNNNNNNNGG	1 cut(s)	949
AflIII	ACRYGT	3 cut(s)	692, 790, 792
AgsI	TTSAA	3 cut(s)	23, 292, 629
AjnI	CCWGG	1 cut(s)	724
AluBI	AGCT	6 cut(s)	466, 566, 745, 761, 926, 936
AluI	AGCT	6 cut(s)	466, 566, 745, 761, 926, 936
Alw21I	GWGCWC	1 cut(s)	711
Alw26I	GTCTC	2 cut(s)	104, 961
AlwNI	CAGNNNCTG	1 cut(s)	566
Ama87I	CYCGRG	1 cut(s)	683
AoxI	GGCC	3 cut(s)	372, 679, 782
ApeKI	GCWGC	1 cut(s)	245
ApoI	RAATTY	3 cut(s)	17, 163, 293
AseI	ATTAAT	1 cut(s)	260
AspS9I	GGNCC	2 cut(s)	680, 783
AsuC2I	CCSGG	1 cut(s)	122
AsuHPI	GGTGA	3 cut(s)	107, 159, 850
AvaI	CYCGRG	1 cut(s)	683
BaeGI	GKGCMC	2 cut(s)	281, 664
BaeI	ACNNNNGTAYC	2 cut(s)	475, 508
BanI	GGYRCC	1 cut(s)	661
BbrPI	CACGTG	1 cut(s)	793
BbsI	GAAGAC	1 cut(s)	549
Bbv12I	GWGCWC	1 cut(s)	711
BbvI	GCAGC	1 cut(s)	257
BccI	CCATC	2 cut(s)	853, 865
BceAI	ACGGC	1 cut(s)	694
BciT130I	CCWGG	1 cut(s)	726
BclI	TGATCA	1 cut(s)	309
BcnI	CCSGG	1 cut(s)	122
BcoDI	GTCTC	2 cut(s)	104, 961
BisI	GCNGC	2 cut(s)	246, 375
BlsI	GCNGC	2 cut(s)	247, 376
Bme1390I	CCNGG	2 cut(s)	122, 726
BmeT110I	CYCGRG	1 cut(s)	683
BmgT120I	GGNCC	2 cut(s)	680, 783
BmiI	GGNNCC	3 cut(s)	126, 663, 682
BmrFI	CCNGG	2 cut(s)	122, 726
BmrI	ACTGGG	1 cut(s)	744
BmsI	GCATC	1 cut(s)	831
BmuI	ACTGGG	1 cut(s)	744
BpiI	GAAGAC	1 cut(s)	549
BpmI	CTGGAG	1 cut(s)	923
BpuMI	CCSGG	1 cut(s)	122
BsaAI	YACGTR	1 cut(s)	793
BsaJI	CCNNGG	2 cut(s)	240, 725
BsaXI	ACNNNNNCTCC	6 cut(s)	18, 48, 422, 452, 593, 623
Bsc4I	CCNNNNNNNGG	1 cut(s)	949
Bse1I	ACTGG	3 cut(s)	626, 739, 906
Bse3DI	GCAATG	2 cut(s)	393, 884
BseBI	CCWGG	1 cut(s)	726
BseDI	CCNNGG	2 cut(s)	240, 725
BseGI	GGATG	3 cut(s)	876, 925, 969
BseLI	CCNNNNNNNGG	1 cut(s)	949
BseMI	GCAATG	2 cut(s)	393, 884
BseMII	CTCAG	1 cut(s)	99
BseNI	ACTGG	3 cut(s)	626, 739, 906
BseRI	GAGGAG	3 cut(s)	42, 45, 908
BseSI	GKGCMC	2 cut(s)	281, 664
BseXI	GCAGC	1 cut(s)	257
BsgI	GTGCAG	1 cut(s)	590
Bsh1236I	CGCG	2 cut(s)	180, 219
BshFI	GGCC	3 cut(s)	374, 681, 784
BshNI	GGYRCC	1 cut(s)	661
BsiHKAI	GWGCWC	1 cut(s)	711
BsiHKCI	CYCGRG	1 cut(s)	683
BsiSI	CCGG	2 cut(s)	121, 890
BslI	CCNNNNNNNGG	1 cut(s)	949
BsmAI	GTCTC	2 cut(s)	104, 961
BsmBI	CGTCTC	1 cut(s)	961
BsnI	GGCC	3 cut(s)	374, 681, 784
BsoBI	CYCGRG	1 cut(s)	683
Bsp1286I	GDGCHC	3 cut(s)	281, 664, 711
Bsp143I	GATC	1 cut(s)	309
Bsp19I	CCATGG	1 cut(s)	240
BspACI	CCGC	6 cut(s)	118, 140, 180, 219, 375, 470
BspANI	GGCC	3 cut(s)	374, 681, 784
BspCNI	CTCAG	1 cut(s)	100
BspFNI	CGCG	2 cut(s)	180, 219
BspLI	GGNNCC	3 cut(s)	126, 663, 682
BspT107I	GGYRCC	1 cut(s)	661
BsrBI	CCGCTC	1 cut(s)	472
BsrDI	GCAATG	2 cut(s)	393, 884
BsrI	ACTGG	3 cut(s)	626, 739, 906
BssECI	CCNNGG	2 cut(s)	240, 725
BssMI	GATC	1 cut(s)	309
BssT1I	CCWWGG	1 cut(s)	240
Bst2UI	CCWGG	1 cut(s)	726
Bst4CI	ACNGT	2 cut(s)	491, 880
Bst6I	CTCTTC	1 cut(s)	636
BstBAI	YACGTR	1 cut(s)	793
BstC8I	GCNNGC	5 cut(s)	66, 372, 400, 428, 864
BstDEI	CTNAG	3 cut(s)	47, 108, 325
BstDSI	CCRYGG	1 cut(s)	240
BstF5I	GGATG	3 cut(s)	876, 925, 969
BstFNI	CGCG	2 cut(s)	180, 219
BstKTI	GATC	1 cut(s)	312
BstMAI	GTCTC	2 cut(s)	104, 961
BstMBI	GATC	1 cut(s)	309
BstMWI	GCNNNNNNNGC	1 cut(s)	399
BstNI	CCWGG	1 cut(s)	726
BstNSI	RCATGY	3 cut(s)	64, 345, 696
BstSCI	CCNGG	2 cut(s)	120, 724
BstSLI	GKGCMC	2 cut(s)	281, 664
BstUI	CGCG	2 cut(s)	180, 219
BstV1I	GCAGC	1 cut(s)	257
BstV2I	GAAGAC	1 cut(s)	549
BstXI	CCANNNNNNTGG	1 cut(s)	241
BsuRI	GGCC	3 cut(s)	374, 681, 784
BtgI	CCRYGG	1 cut(s)	240
BtsCI	GGATG	3 cut(s)	876, 925, 969
BtsIMutI	CAGTG	1 cut(s)	885
Cac8I	GCNNGC	5 cut(s)	66, 372, 400, 428, 864
CaiI	CAGNNNCTG	1 cut(s)	566
Cfr13I	GGNCC	2 cut(s)	680, 783
Csp6I	GTAC	5 cut(s)	134, 484, 574, 676, 788
CviAII	CATG	9 cut(s)	61, 102, 241, 342, 578, 693, 703, 712, 803
CviQI	GTAC	5 cut(s)	134, 484, 574, 676, 788
DdeI	CTNAG	3 cut(s)	47, 108, 325
DpnI	GATC	1 cut(s)	311
DpnII	GATC	1 cut(s)	309
EaeI	YGGCCR	1 cut(s)	372
Eam1104I	CTCTTC	1 cut(s)	636
EarI	CTCTTC	1 cut(s)	636
Eco130I	CCWWGG	1 cut(s)	240
Eco57I	CTGAAG	1 cut(s)	532
Eco72I	CACGTG	1 cut(s)	793
Eco88I	CYCGRG	1 cut(s)	683
EcoRI	GAATTC	1 cut(s)	163
EcoRII	CCWGG	1 cut(s)	724
EcoT14I	CCWWGG	1 cut(s)	240
ErhI	CCWWGG	1 cut(s)	240
Esp3I	CGTCTC	1 cut(s)	961
FaeI	CATG	9 cut(s)	64, 105, 244, 345, 581, 696, 706, 715, 806
FalI	AAGNNNNNCTT	2 cut(s)	530, 562
FatI	CATG	9 cut(s)	60, 101, 240, 341, 577, 692, 702, 711, 802
FauI	CCCGC	1 cut(s)	147
FbaI	TGATCA	1 cut(s)	309
Fnu4HI	GCNGC	2 cut(s)	246, 375
FokI	GGATG	2 cut(s)	883, 932
Fsp4HI	GCNGC	2 cut(s)	246, 375
GluI	GCNGC	2 cut(s)	246, 375
GsuI	CTGGAG	1 cut(s)	923
HaeIII	GGCC	3 cut(s)	374, 681, 784
HapII	CCGG	2 cut(s)	121, 890
Hin1II	CATG	9 cut(s)	64, 105, 244, 345, 581, 696, 706, 715, 806
HincII	GTYRAC	2 cut(s)	690, 718
HindII	GTYRAC	2 cut(s)	690, 718
HindIII	AAGCTT	1 cut(s)	464
HinfI	GANTC	3 cut(s)	112, 586, 629
HpaII	CCGG	2 cut(s)	121, 890
HphI	GGTGA	3 cut(s)	107, 159, 850
Hpy166II	GTNNAC	4 cut(s)	136, 690, 718, 790
Hpy188I	TCNGA	1 cut(s)	551
Hpy188III	TCNNGA	4 cut(s)	457, 633, 851, 917
Hpy8I	GTNNAC	4 cut(s)	136, 690, 718, 790
Hpy99I	CGWCG	1 cut(s)	134
HpyAV	CCTTC	6 cut(s)	17, 153, 590, 812, 818, 848
HpyCH4III	ACNGT	2 cut(s)	491, 880
HpyCH4IV	ACGT	1 cut(s)	792
HpyCH4V	TGCA	3 cut(s)	64, 353, 571
HpyF10VI	GCNNNNNNNGC	1 cut(s)	399
HpyF3I	CTNAG	3 cut(s)	47, 108, 325
HpySE526I	ACGT	1 cut(s)	792
Hsp92II	CATG	9 cut(s)	64, 105, 244, 345, 581, 696, 706, 715, 806
Ksp22I	TGATCA	1 cut(s)	309
Kzo9I	GATC	1 cut(s)	309
LmnI	GCTCC	3 cut(s)	4, 706, 904
Lsp1109I	GCAGC	1 cut(s)	257
LweI	GCATC	1 cut(s)	831
MaeII	ACGT	1 cut(s)	792
MaeIII	GTNAC	3 cut(s)	82, 874, 880
MalI	GATC	1 cut(s)	311
MbiI	CCGCTC	1 cut(s)	472
MboI	GATC	1 cut(s)	309
MboII	GAAGA	4 cut(s)	472, 545, 554, 653
MhlI	GDGCHC	3 cut(s)	281, 664, 711
MluCI	AATT	4 cut(s)	17, 163, 293, 908
MlyI	GAGTC	2 cut(s)	106, 595
MmeI	TCCRAC	1 cut(s)	787
MnlI	CCTC	9 cut(s)	20, 23, 332, 446, 637, 641, 851, 886, 889
MseI	TTAA	3 cut(s)	260, 404, 938
MspA1I	CMGCKG	1 cut(s)	761
MspI	CCGG	2 cut(s)	121, 890
MspR9I	CCNGG	2 cut(s)	122, 726
MvaI	CCWGG	1 cut(s)	726
MvnI	CGCG	2 cut(s)	180, 219
MwoI	GCNNNNNNNGC	1 cut(s)	399
NciI	CCSGG	1 cut(s)	122
NcoI	CCATGG	1 cut(s)	240
NdeII	GATC	1 cut(s)	309
NlaIII	CATG	9 cut(s)	64, 105, 244, 345, 581, 696, 706, 715, 806
NlaIV	GGNNCC	3 cut(s)	126, 663, 682
NmuCI	GTSAC	2 cut(s)	82, 880
NspI	RCATGY	3 cut(s)	64, 345, 696
PciI	ACATGT	1 cut(s)	692
PfeI	GAWTC	1 cut(s)	629
PkrI	GCNGC	2 cut(s)	247, 376
PleI	GAGTC	2 cut(s)	106, 594
PmaCI	CACGTG	1 cut(s)	793
PmlI	CACGTG	1 cut(s)	793
PpsI	GAGTC	2 cut(s)	106, 594
Ppu21I	YACGTR	1 cut(s)	793
PscI	ACATGT	1 cut(s)	692
PshBI	ATTAAT	1 cut(s)	260
Psp6I	CCWGG	1 cut(s)	724
PspCI	CACGTG	1 cut(s)	793
PspGI	CCWGG	1 cut(s)	724
PspN4I	GGNNCC	3 cut(s)	126, 663, 682
PspPI	GGNCC	2 cut(s)	680, 783
PsrI	GAACNNNNNNTAC	2 cut(s)	117, 149
PstNI	CAGNNNCTG	1 cut(s)	566
PvuII	CAGCTG	1 cut(s)	761
RsaI	GTAC	5 cut(s)	135, 485, 575, 677, 789
RsaNI	GTAC	5 cut(s)	134, 484, 574, 676, 788
SaqAI	TTAA	3 cut(s)	260, 404, 938
SatI	GCNGC	2 cut(s)	246, 375
Sau3AI	GATC	1 cut(s)	309
Sau96I	GGNCC	2 cut(s)	680, 783
SchI	GAGTC	2 cut(s)	106, 595
ScrFI	CCNGG	2 cut(s)	122, 726
SduI	GDGCHC	3 cut(s)	281, 664, 711
SfaNI	GCATC	1 cut(s)	831
Sse9I	AATT	4 cut(s)	17, 163, 293, 908
SsiI	CCGC	6 cut(s)	118, 140, 180, 219, 375, 470
StyD4I	CCNGG	2 cut(s)	120, 724
StyI	CCWWGG	1 cut(s)	240
TaaI	ACNGT	2 cut(s)	491, 880
TaiI	ACGT	1 cut(s)	795
TaqI	TCGA	3 cut(s)	161, 584, 932
TasI	AATT	4 cut(s)	17, 163, 293, 908
TauI	GCSGC	1 cut(s)	377
TfiI	GAWTC	1 cut(s)	629
Tru1I	TTAA	3 cut(s)	260, 404, 938
Tru9I	TTAA	3 cut(s)	260, 404, 938
TscAI	CASTG	1 cut(s)	885
TseFI	GTSAC	2 cut(s)	82, 880
TseI	GCWGC	1 cut(s)	245
Tsp45I	GTSAC	2 cut(s)	82, 880
TspDTI	ATGAA	4 cut(s)	30, 318, 507, 936
TspRI	CASTG	1 cut(s)	885
VspI	ATTAAT	1 cut(s)	260
XapI	RAATTY	3 cut(s)	17, 163, 293
XceI	RCATGY	3 cut(s)	64, 345, 696

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.