RLG00000025665

Transferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0004543
Physical Location & Seq
Forward (+)
47446235 .. 47451285
5051 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000025665

Sequence Viewer

Length: 1398 bp
ATGATGAAGCAGAGCCAGAGCAACCGGGTGGCTGTCCGCTCAAAGCTAACGGCAGTATCCAGCAGGCCGGTGAACCCGGGTACGATCCATTCTTTCACGGGTCTGGACCATGCAATGGCCCTGCACAGCGTTCACGTGATATTCTACTACAAGGAGAAGCTGTTTTCATATTTTGACTTGGACCCGTTTCGGGTGTGTCTCTCGGAGATCCTATCACTGTACCCGCCTGTGACGGGTAGGATAGTCCGGAGAGAGGTCGACGATGAGTGGGAGGTCAAGTGTAACGATGCCGGTGTTAGGGTGGTGAAGGCCACGGTGGCGACAACACTTGATGAGTGGCTGGGATCTGCTGATGGGGCGGAGGAGAAGTTGCTGACGGCGTGGGATGATATGCCTCGTGGTGATCCTAGTTCATGGTCGCCGTATAGAATCCAGATAAATGAATTTGAAGGAGGAGGAGTAGCCATTGGACTAAGTTGCTCTCACATGCAAGCAGACCCAACTTGTGCGACCCTACTTATCAAGTCATGGGCCGAGACTCACCGCCGGGAACCTGTCATACACCCACCTTCCTTCGACGACTTATCGGACTCGCCACTCACTCGGGGACTCAACATTCACAGCACAAAGTCATCACGTGTTTATTACGAAGCCAAGTCCATGGCAGTACAGACCCCATTAGTATTGAATAAAATGGGCACAGCCACTTTCAAATTTTCCAATGAAGTGATCAAGCAAAGCCTCTTAGAAATCCACCAAACATGCCCTGTTGCAACCCCGTTTGATTTGCTGGCCGCACTCTTTTGGGCACGCATTGCTCGCTTGAAGCACCGGGAAAGCATAAGCAAGCACTCCCTCTCCATTTGTGTCGACTTCAGGAAGAAGCTGCAGCTCTCGTATGGGCACTACGGCAATGCCTTGCATTTTTCGTTGCTTTCATTACCTGATGTGGAAGAAAAGGAAGACTTGGGAGATGTGGCTGAAGCCGTGCACTGCCATGTGTTGAGTCTGGGGGAGGGGGAGTTTTGGTCTGCTTTAGACTGGTTTGAATCACGAAAGGAAGAGGGAGGTCACTTTGGGGCACCTTTTAGGATGTATGGCCCCGAGTTGACATGTATGAGCATGGAGCACATGGTTGACTTTCCTGGGAATACTGGGAATAAGCCGTTGATGTATACAGCTGTGTTTGATAAGGAGAGCAGGCCTGTACACGTGTCATATCATGTTGGAAATGTGGAAGGGGAAGGTTTGATAATGGTGATGCCATCTTCGGAAGGAGGGCTGGCAAGGATGGTTATGGTGACATTGCCAGAGGAGGAACTAGAGCAACTATGTCAGGATGAAGCTATTTCGAGCTTAAATCCAATAATGGTCATGAGTGGGACGAGACGAGCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Transferase

Protein Analysis

466

Amino Acids

51.95

Weight (kDa)

5.69

Isoelectric Point (pI)

48.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transferase PF02458 34 - 447 9.9e-37 Transferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1081
AccB7I CCANNNNNTGG 1 cut(s) 115
AccBSI CCGCTC 1 cut(s) 39
AccI GTMKAC 3 cut(s) 258, 870, 1175
AccIII TCCGGA 1 cut(s) 246
AciI CCGC 5 cut(s) 37, 224, 359, 544, 795
AclWI GGATC 4 cut(s) 79, 202, 352, 398
AcoI YGGCCR 1 cut(s) 792
AcsI RAATTY 2 cut(s) 443, 713
AcuI CTGAAG 2 cut(s) 859, 1002
AcvI CACGTG 3 cut(s) 136, 638, 1213
AfaI GTAC 4 cut(s) 82, 221, 669, 1209
AfiI CCNNNNNNNGG 5 cut(s) 115, 190, 233, 253, 297
AflIII ACRYGT 4 cut(s) 637, 1112, 1210, 1212
AgsI TTSAA 5 cut(s) 449, 688, 712, 826, 1049
AjnI CCWGG 1 cut(s) 1144
AluBI AGCT 7 cut(s) 46, 160, 886, 892, 1181, 1346, 1356
AluI AGCT 7 cut(s) 46, 160, 886, 892, 1181, 1346, 1356
Alw21I GWGCWC 2 cut(s) 993, 1131
Alw26I GTCTC 3 cut(s) 203, 530, 1381
Alw44I GTGCAC 1 cut(s) 989
AlwI GGATC 4 cut(s) 79, 202, 352, 398
Ama87I CYCGRG 3 cut(s) 76, 603, 1103
Aor13HI TCCGGA 1 cut(s) 246
AoxI GGCC 7 cut(s) 65, 117, 309, 531, 792, 1099, 1202
ApaLI GTGCAC 1 cut(s) 989
ApeKI GCWGC 2 cut(s) 886, 889
ApoI RAATTY 2 cut(s) 443, 713
AspS9I GGNCC 5 cut(s) 106, 118, 181, 531, 1100
AsuC2I CCSGG 5 cut(s) 26, 77, 78, 548, 833
AsuHPI GGTGA 6 cut(s) 82, 316, 413, 533, 1270, 1312
AvaI CYCGRG 3 cut(s) 76, 603, 1103
AvaII GGWCC 2 cut(s) 106, 181
BaeGI GKGCMC 5 cut(s) 701, 811, 906, 993, 1084
BaeI ACNNNNGTAYC 2 cut(s) 39, 72
BanI GGYRCC 1 cut(s) 1081
BauI CACGAG 1 cut(s) 396
BbrPI CACGTG 3 cut(s) 136, 638, 1213
BbsI GAAGAC 1 cut(s) 969
Bbv12I GWGCWC 2 cut(s) 993, 1131
BbvI GCAGC 2 cut(s) 873, 901
BccI CCATC 3 cut(s) 347, 1273, 1285
BceAI ACGGC 6 cut(s) 66, 393, 406, 925, 971, 1150
BciT130I CCWGG 1 cut(s) 1146
BciVI GTATCC 1 cut(s) 67
BclI TGATCA 1 cut(s) 729
BcnI CCSGG 5 cut(s) 26, 77, 78, 548, 833
BcoDI GTCTC 3 cut(s) 203, 530, 1381
BfaI CTAG 2 cut(s) 408, 1322
BfmI CTRYAG 1 cut(s) 887
BfuI GTATCC 1 cut(s) 67
BglI GCCNNNNNGGC 1 cut(s) 317
BisI GCNGC 3 cut(s) 795, 887, 890
BlsI GCNGC 3 cut(s) 796, 888, 891
Bme1390I CCNGG 6 cut(s) 26, 77, 78, 548, 833, 1146
Bme18I GGWCC 2 cut(s) 106, 181
BmeT110I CYCGRG 3 cut(s) 76, 603, 1103
BmgT120I GGNCC 5 cut(s) 106, 118, 181, 531, 1100
BmiI GGNNCC 4 cut(s) 183, 552, 1083, 1102
BmrFI CCNGG 6 cut(s) 26, 77, 78, 548, 833, 1146
BmrI ACTGGG 1 cut(s) 1164
BmsI GCATC 2 cut(s) 277, 1251
BmuI ACTGGG 1 cut(s) 1164
BpiI GAAGAC 1 cut(s) 969
BpuMI CCSGG 5 cut(s) 26, 77, 78, 548, 833
BsaAI YACGTR 3 cut(s) 136, 638, 1213
BsaJI CCNNGG 4 cut(s) 76, 312, 660, 1145
BsaWI WCCGGW 1 cut(s) 246
Bsc4I CCNNNNNNNGG 5 cut(s) 115, 190, 233, 253, 297
Bse118I RCCGGY 2 cut(s) 67, 290
Bse1I ACTGG 2 cut(s) 1046, 1159
Bse3DI GCAATG 4 cut(s) 120, 813, 919, 1304
BseAI TCCGGA 1 cut(s) 246
BseBI CCWGG 1 cut(s) 1146
BseDI CCNNGG 4 cut(s) 76, 312, 660, 1145
BseGI GGATG 4 cut(s) 391, 1098, 1296, 1345
BseLI CCNNNNNNNGG 5 cut(s) 115, 190, 233, 253, 297
BseMI GCAATG 4 cut(s) 120, 813, 919, 1304
BseNI ACTGG 2 cut(s) 1046, 1159
BseRI GAGGAG 4 cut(s) 377, 468, 471, 1328
BseSI GKGCMC 5 cut(s) 701, 811, 906, 993, 1084
BseXI GCAGC 2 cut(s) 873, 901
BseYI CCCAGC 1 cut(s) 340
BsgI GTGCAG 1 cut(s) 107
BshFI GGCC 7 cut(s) 67, 119, 311, 533, 794, 1101, 1204
BshNI GGYRCC 1 cut(s) 1081
BsiHKAI GWGCWC 2 cut(s) 993, 1131
BsiHKCI CYCGRG 3 cut(s) 76, 603, 1103
BsiSI CCGG 7 cut(s) 25, 68, 77, 247, 291, 547, 832
BslFI GGGAC 1 cut(s) 621
BslI CCNNNNNNNGG 5 cut(s) 115, 190, 233, 253, 297
BsmAI GTCTC 3 cut(s) 203, 530, 1381
BsmBI CGTCTC 1 cut(s) 1381
BsmFI GGGAC 1 cut(s) 621
BsnI GGCC 7 cut(s) 67, 119, 311, 533, 794, 1101, 1204
BsoBI CYCGRG 3 cut(s) 76, 603, 1103
Bsp1286I GDGCHC 6 cut(s) 701, 811, 906, 993, 1084, 1131
Bsp13I TCCGGA 1 cut(s) 246
Bsp1407I TGTACA 1 cut(s) 1207
Bsp143I GATC 5 cut(s) 84, 207, 344, 403, 729
Bsp19I CCATGG 1 cut(s) 660
BspACI CCGC 5 cut(s) 37, 224, 359, 544, 795
BspANI GGCC 7 cut(s) 67, 119, 311, 533, 794, 1101, 1204
BspEI TCCGGA 1 cut(s) 246
BspHI TCATGA 1 cut(s) 1374
BspLI GGNNCC 4 cut(s) 183, 552, 1083, 1102
BspMAI CTGCAG 1 cut(s) 891
BspPI GGATC 4 cut(s) 79, 202, 352, 398
BspT107I GGYRCC 1 cut(s) 1081
BsrBI CCGCTC 1 cut(s) 39
BsrDI GCAATG 4 cut(s) 120, 813, 919, 1304
BsrFI RCCGGY 2 cut(s) 67, 290
BsrGI TGTACA 1 cut(s) 1207
BsrI ACTGG 2 cut(s) 1046, 1159
BssAI RCCGGY 2 cut(s) 67, 290
BssECI CCNNGG 4 cut(s) 76, 312, 660, 1145
BssMI GATC 5 cut(s) 84, 207, 344, 403, 729
BssNAI GTATAC 1 cut(s) 1176
BssSI CACGAG 1 cut(s) 396
BssT1I CCWWGG 1 cut(s) 660
Bst1107I GTATAC 1 cut(s) 1176
Bst2BI CACGAG 1 cut(s) 396
Bst2UI CCWGG 1 cut(s) 1146
Bst4CI ACNGT 2 cut(s) 219, 316
Bst6I CTCTTC 1 cut(s) 1056
BstAPI GCANNNNNTGC 1 cut(s) 815
BstAUI TGTACA 1 cut(s) 1207
BstBAI YACGTR 3 cut(s) 136, 638, 1213
BstC8I GCNNGC 8 cut(s) 65, 492, 792, 811, 820, 848, 1202, 1284
BstDEI CTNAG 2 cut(s) 473, 745
BstDSI CCRYGG 2 cut(s) 312, 660
BstF5I GGATG 4 cut(s) 391, 1098, 1296, 1345
BstKTI GATC 5 cut(s) 87, 210, 347, 406, 732
BstMAI GTCTC 3 cut(s) 203, 530, 1381
BstMBI GATC 5 cut(s) 84, 207, 344, 403, 729
BstMWI GCNNNNNNNGC 4 cut(s) 317, 356, 815, 819
BstNI CCWGG 1 cut(s) 1146
BstNSI RCATGY 3 cut(s) 490, 765, 1116
BstSCI CCNGG 6 cut(s) 24, 75, 76, 546, 831, 1144
BstSFI CTRYAG 1 cut(s) 887
BstSLI GKGCMC 5 cut(s) 701, 811, 906, 993, 1084
BstV1I GCAGC 2 cut(s) 873, 901
BstV2I GAAGAC 1 cut(s) 969
BstX2I RGATCY 2 cut(s) 207, 344
BstXI CCANNNNNNTGG 1 cut(s) 661
BstYI RGATCY 2 cut(s) 207, 344
BstZ17I GTATAC 1 cut(s) 1176
BsuI GTATCC 1 cut(s) 67
BsuRI GGCC 7 cut(s) 67, 119, 311, 533, 794, 1101, 1204
BtgI CCRYGG 2 cut(s) 312, 660
BtsCI GGATG 4 cut(s) 391, 1098, 1296, 1345
BtsI GCAGTG 1 cut(s) 991
BtsIMutI CAGTG 2 cut(s) 215, 991
Cac8I GCNNGC 8 cut(s) 65, 492, 792, 811, 820, 848, 1202, 1284
CciI TCATGA 1 cut(s) 1374
Cfr10I RCCGGY 2 cut(s) 67, 290
Cfr13I GGNCC 5 cut(s) 106, 118, 181, 531, 1100
Cfr9I CCCGGG 1 cut(s) 76
Csp6I GTAC 4 cut(s) 81, 220, 668, 1208
CviQI GTAC 4 cut(s) 81, 220, 668, 1208
DdeI CTNAG 2 cut(s) 473, 745
DpnI GATC 5 cut(s) 86, 209, 346, 405, 731
DpnII GATC 5 cut(s) 84, 207, 344, 403, 729
EaeI YGGCCR 1 cut(s) 792
Eam1104I CTCTTC 1 cut(s) 1056
EarI CTCTTC 1 cut(s) 1056
EciI GGCGGA 1 cut(s) 374
Eco130I CCWWGG 1 cut(s) 660
Eco147I AGGCCT 1 cut(s) 1204
Eco47I GGWCC 2 cut(s) 106, 181
Eco57I CTGAAG 2 cut(s) 859, 1002
Eco72I CACGTG 3 cut(s) 136, 638, 1213
Eco88I CYCGRG 3 cut(s) 76, 603, 1103
EcoRII CCWGG 1 cut(s) 1144
EcoT14I CCWWGG 1 cut(s) 660
ErhI CCWWGG 1 cut(s) 660
Esp3I CGTCTC 1 cut(s) 1381
FalI AAGNNNNNCTT 2 cut(s) 950, 982
FaqI GGGAC 1 cut(s) 621
FauI CCCGC 1 cut(s) 231
FbaI TGATCA 1 cut(s) 729
FblI GTMKAC 3 cut(s) 258, 870, 1175
Fnu4HI GCNGC 3 cut(s) 795, 887, 890
FokI GGATG 4 cut(s) 398, 1105, 1303, 1352
Fsp4HI GCNGC 3 cut(s) 795, 887, 890
FspBI CTAG 2 cut(s) 408, 1322
GluI GCNGC 3 cut(s) 795, 887, 890
GsaI CCCAGC 1 cut(s) 344
HaeIII GGCC 7 cut(s) 67, 119, 311, 533, 794, 1101, 1204
HapII CCGG 7 cut(s) 25, 68, 77, 247, 291, 547, 832
HincII GTYRAC 4 cut(s) 259, 871, 1110, 1138
HindII GTYRAC 4 cut(s) 259, 871, 1110, 1138
HinfI GANTC 6 cut(s) 429, 538, 590, 609, 1006, 1049
HpaII CCGG 7 cut(s) 25, 68, 77, 247, 291, 547, 832
HphI GGTGA 6 cut(s) 82, 316, 413, 533, 1270, 1312
Hpy166II GTNNAC 9 cut(s) 73, 133, 259, 871, 991, 1110, 1138, 1176, 1210
Hpy188I TCNGA 3 cut(s) 205, 589, 1273
Hpy188III TCNNGA 7 cut(s) 104, 247, 433, 877, 1053, 1337, 1375
Hpy8I GTNNAC 9 cut(s) 73, 133, 259, 871, 991, 1110, 1138, 1176, 1210
Hpy99I CGWCG 2 cut(s) 263, 581
HpyAV CCTTC 7 cut(s) 301, 443, 579, 583, 1232, 1238, 1268
HpyCH4III ACNGT 2 cut(s) 219, 316
HpyCH4IV ACGT 3 cut(s) 135, 637, 1212
HpyCH4V TGCA 7 cut(s) 113, 124, 490, 773, 889, 922, 991
HpyF10VI GCNNNNNNNGC 4 cut(s) 317, 356, 815, 819
HpyF3I CTNAG 2 cut(s) 473, 745
HpySE526I ACGT 3 cut(s) 135, 637, 1212
Kpn2I TCCGGA 1 cut(s) 246
Ksp22I TGATCA 1 cut(s) 729
Kzo9I GATC 5 cut(s) 84, 207, 344, 403, 729
LmnI GCTCC 1 cut(s) 1126
Lsp1109I GCAGC 2 cut(s) 873, 901
LweI GCATC 2 cut(s) 277, 1251
MaeI CTAG 2 cut(s) 408, 1322
MaeII ACGT 3 cut(s) 135, 637, 1212
MaeIII GTNAC 4 cut(s) 229, 281, 1070, 1300
MalI GATC 5 cut(s) 86, 209, 346, 405, 731
MbiI CCGCTC 1 cut(s) 39
MboI GATC 5 cut(s) 84, 207, 344, 403, 729
MboII GAAGA 5 cut(s) 892, 965, 974, 1073, 1260
MflI RGATCY 2 cut(s) 207, 344
MhlI GDGCHC 6 cut(s) 701, 811, 906, 993, 1084, 1131
MluCI AATT 2 cut(s) 443, 713
MlyI GAGTC 4 cut(s) 532, 584, 603, 1015
MmeI TCCRAC 1 cut(s) 1207
MroI TCCGGA 1 cut(s) 246
MseI TTAA 1 cut(s) 1358
MslI CAYNNNNRTG 1 cut(s) 996
MspA1I CMGCKG 1 cut(s) 1181
MspI CCGG 7 cut(s) 25, 68, 77, 247, 291, 547, 832
MspR9I CCNGG 6 cut(s) 26, 77, 78, 548, 833, 1146
MvaI CCWGG 1 cut(s) 1146
MwoI GCNNNNNNNGC 4 cut(s) 317, 356, 815, 819
NciI CCSGG 5 cut(s) 26, 77, 78, 548, 833
NcoI CCATGG 1 cut(s) 660
NdeII GATC 5 cut(s) 84, 207, 344, 403, 729
NlaIV GGNNCC 4 cut(s) 183, 552, 1083, 1102
NmeAIII GCCGAG 1 cut(s) 559
NmuCI GTSAC 3 cut(s) 229, 1070, 1300
NspI RCATGY 3 cut(s) 490, 765, 1116
PagI TCATGA 1 cut(s) 1374
PceI AGGCCT 1 cut(s) 1204
PciI ACATGT 1 cut(s) 1112
PfeI GAWTC 2 cut(s) 429, 1049
PflMI CCANNNNNTGG 1 cut(s) 115
PkrI GCNGC 3 cut(s) 796, 888, 891
PleI GAGTC 4 cut(s) 532, 584, 603, 1014
PmaCI CACGTG 3 cut(s) 136, 638, 1213
PmlI CACGTG 3 cut(s) 136, 638, 1213
PpsI GAGTC 4 cut(s) 532, 584, 603, 1014
Ppu21I YACGTR 3 cut(s) 136, 638, 1213
PscI ACATGT 1 cut(s) 1112
Psp6I CCWGG 1 cut(s) 1144
PspCI CACGTG 3 cut(s) 136, 638, 1213
PspFI CCCAGC 1 cut(s) 340
PspGI CCWGG 1 cut(s) 1144
PspN4I GGNNCC 4 cut(s) 183, 552, 1083, 1102
PspPI GGNCC 5 cut(s) 106, 118, 181, 531, 1100
PsrI GAACNNNNNNTAC 2 cut(s) 543, 575
PstI CTGCAG 1 cut(s) 891
PsuI RGATCY 2 cut(s) 207, 344
PvuII CAGCTG 1 cut(s) 1181
RsaI GTAC 4 cut(s) 82, 221, 669, 1209
RsaNI GTAC 4 cut(s) 81, 220, 668, 1208
RseI CAYNNNNRTG 1 cut(s) 996
SalI GTCGAC 2 cut(s) 257, 869
SaqAI TTAA 1 cut(s) 1358
SatI GCNGC 3 cut(s) 795, 887, 890
Sau3AI GATC 5 cut(s) 84, 207, 344, 403, 729
Sau96I GGNCC 5 cut(s) 106, 118, 181, 531, 1100
SchI GAGTC 4 cut(s) 532, 584, 603, 1015
ScrFI CCNGG 6 cut(s) 26, 77, 78, 548, 833, 1146
SduI GDGCHC 6 cut(s) 701, 811, 906, 993, 1084, 1131
SfaNI GCATC 2 cut(s) 277, 1251
SfcI CTRYAG 1 cut(s) 887
SinI GGWCC 2 cut(s) 106, 181
SmaI CCCGGG 1 cut(s) 78
SmiMI CAYNNNNRTG 1 cut(s) 996
Sse9I AATT 2 cut(s) 443, 713
SseBI AGGCCT 1 cut(s) 1204
SsiI CCGC 5 cut(s) 37, 224, 359, 544, 795
SspMI CTAG 2 cut(s) 408, 1322
StuI AGGCCT 1 cut(s) 1204
StyD4I CCNGG 6 cut(s) 24, 75, 76, 546, 831, 1144
StyI CCWWGG 1 cut(s) 660
TaaI ACNGT 2 cut(s) 219, 316
TaiI ACGT 3 cut(s) 138, 640, 1215
TaqI TCGA 4 cut(s) 258, 576, 870, 1352
TasI AATT 2 cut(s) 443, 713
TatI WGTACW 2 cut(s) 667, 1207
TauI GCSGC 1 cut(s) 797
TfiI GAWTC 2 cut(s) 429, 1049
Tru1I TTAA 1 cut(s) 1358
Tru9I TTAA 1 cut(s) 1358
TscAI CASTG 2 cut(s) 222, 998
TseFI GTSAC 3 cut(s) 229, 1070, 1300
TseI GCWGC 2 cut(s) 886, 889
Tsp45I GTSAC 3 cut(s) 229, 1070, 1300
TspDTI ATGAA 7 cut(s) 20, 156, 402, 456, 738, 927, 1356
TspMI CCCGGG 1 cut(s) 76
TspRI CASTG 2 cut(s) 222, 998
Van91I CCANNNNNTGG 1 cut(s) 115
VneI GTGCAC 1 cut(s) 989
VpaK11BI GGWCC 2 cut(s) 106, 181
XapI RAATTY 2 cut(s) 443, 713
XceI RCATGY 3 cut(s) 490, 765, 1116
XmaI CCCGGG 1 cut(s) 76
XmiI GTMKAC 3 cut(s) 258, 870, 1175
XspI CTAG 2 cut(s) 408, 1322
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.