Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0007016

Physical Location & Seq

Genomic Coordinates Reverse (-)

2001938 .. 2010786

Gene Structure 8849 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g03690.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2955 bp

ATGGGCGTCCCCGCGTTTTACCGCTGGCTGGCGGATCGGTACCCGCTCTCGATCGTCGACGTGGTCGAGGAACACCCCAGGGAGGACCCCAACGGCGTGCCGAGACCTATCGACGTTTCGCGGCCAAACCCTAACGGGTTTGAGTTCGATAATCTCTACCTCGATATGAACGGCATTATCCATCCCTGCTTTCATCCCGATGGCCGACCTGCTCCGGTTACTTATGAGGACGTATACAAGTCAATATTTGACTACATTGATCATCTCTTCACGCTGGTTCGCCCAAGAAAGCTTCTTTTTATGGCAATTGATGGGGTTGCGCCAAGAGCAAAAATGAATCAGCAACGCACTCGACGTTTCAGAGCTGCAAAAGATGCGGCTGAGGCGGAAGCTGAAGAAGAAAGACTAAAGAACGAATTTGAGACGGAGGGGGAATCATTGGTTCCTAAAGAGAAACGTGAAACTTCAGATTCAAATGTTATTACTCCAGGCACTCAATTTATGGCGGTTCTCTCAGTAGCACTTCAGTATTTTATACAAAGTAAATTGAACAGCGACCGTGGTTGGCGGTCTACAAAGGTTATTCTTTCTGATGCCAACGTTCCTGGTGAGGGGGAGCACAAAATAATGTCATACATCCGATCGCAACGCAACCTTCCGGGTTTTGATCCAAACACTCGGCATTGTCTTTATGGTCTGGATGCAGATCTAATTATGCTTGCATTGGCTACACATGAGGTTCACTTCTCAATATTAAGAGAGGTGATTACTCTTCCAAGTCAACAGGAAAAATGTTTTCTTTGTGGACAAGTTGGTCACCTGGCAGCTGAATGTCGTGGTGGCGATGATGGTGCCAATTTAACTCCAATTCACCAGAAGAAATATCAGTTCCTCCACATCTGGGTGTTGCGTGAGTATTTGCAATATGAGCTGGACATACCCAATCCTCCTTTTCAGCTTAATTTTGAAAGGATAGTGGATGATTTTGTGTTTATGTGCTTTTTTGTTGGCAATGATTTTCTTCCACATATGCCAACATTGGAGATCAGAGAGGGTGCAATTAATTTATTGATGCATATTTATAGAAGAGAGTTTTCTGCTATGGGTGGCTATCTCACTGATGCGGGTGAGGTATTGCTAGATAGAGTAGAGCGTTTTATCCAGTCTGTTGCTGTCTATGAGCGCCAAATTTTTCAAAAGCGGGCTCGAATTCAGCAGATTAGGATAATGTTCATACTGATGATGATTATATTTCAGGCCTTTGAGAATAATGAAGAGAGACAGAGAAATAGAAGAGAGTCTTGTGAAGAGCTACCCGCTCCGGTGGTAGAAAAGGTGGTGGACAAGGTTAAATTGGGGGAGCCTGGATATACAGAAAGGTATTATGCTGAGAAGTTCCAAGTATCAAAGCCAGAGGAGGTTGAAACAGTTAAGAAAGACCTGGTTCTGAAATATGTAGAAGGCTTATGTTGGGTCTGCCGATATTACTACCAAGGGGTCTGCTCATGGCAATGGTATTACCCATACCATTATGCTCCTTTTGCTTCTGATTTAGAAAATCTGGATGACTTGGAAATAACATTTTTCTTGGGAGAGCCATTTAAACCCTTTGATCAGCTCATGGGAACCTTACCAGCTGCAAGTTGTAGTGCTCTTCCCGAAAAATACAGAAATTTAATGACTGATCCGTCATCTCCCATTTGCAATTTCTATCCATCTGATTTTGAGATTGACATGAATGGCAAGCGCTTTGCATGGCAGGGTGTTGCCAAATTGCCATTCATTGATGAGAAGAAATTGCTTGCTCAGACAAGGAAGCTCGAAAGCACTTTAACGGAAGAAGAGCTAGCTCGAAATAGTGTGATGCTTGATTTGCTTTTTGTCTATCCTTCTCATCCTTTGGCGTCTCATATAACTTTGTACTACCAAGTATATTGTCAGAGCCCACCACATGTAAGATTACCATGGGTGATAGATACAAGTCTCAGTGGTGGAATGAATGGATTCCTTTGGTTATCCGAGAGGAATGGGTTTAGAAATGTAATCCCATCACCCGTGCGTGGTTTTCCCAACATAGACCATAACCAAGTCCTAAATGTTACATATCTTCTTCCTGTAGCTCAGAAACACATTCCAGAACCTCCCAGGGGTGTGATCATGCCCAGAAAGGTTGTAAAACCTATGGATATCAAACCTCCCCCGGCATTATGGCATGAAGACAATGGTCCCCGGCGCTACCAAAACAGAGATAGGCCACAAATACCTGGAGCAATTGCTGGACCTATGTTGGGTGAAGCAGCTCATCGACTTGTCAAGAACACACTAAATCTTAGACCTAGTAATGCATCCTCTGGATTTTGGGATCAACCGCGGCCTTTACGAACTACTTCTGGAAACTACATCGGTAATTATCCAGTCAACAGACCAAGACCAGCCGGGCCATCTGGGTATGAAAGGGGTTTCCGTGAAGAACCAAATTATGGAAATTCCTTTAATCCTCAGGGCATCATGGCTAGGCCCAGAGCTCCGTACTCAAATGGTCTGCAGGGTAACAGACAAAGTTTTAGGACACAAGAAAGAACGCAATATCAAGAGCAGAGTTTTAGATCACCAGAAAGAATACAATATCAAGAACAGTACCACAACTTGAGAAATGGGATCTCTAGTTTAACAATGGAAGAAAGTGTGAGAACCAGGTCTCCTGTAGTGGCACAACCAGGGATGCCAAATCCAGGATACTCCACAAACCCACATCCGCAGTTTGTGCAGAACGCAGGCGCTCTTCCAGTGCCACCTACAAAGTGGTTCAACAAAGAATCGAGTGCCAATGGTGGATTCTATGGTAGGCAACAGGAACCTGGAAATGGTGGACCATATGAACAGCAGGTCAAAAAGGTTTATCAGGTAAAGGCACGTGATCCTCAGGACTTGTCAAACTCCGGAAGCCAGCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000291 GO:0000902 GO:0000932 GO:0000956 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003824 GO:0004518 GO:0004527 GO:0004532 GO:0004534 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005844 GO:0006139 GO:0006401 GO:0006402 GO:0006725 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0008409 GO:0009056 GO:0009057 GO:0009266 GO:0009408 GO:0009628 GO:0009653 GO:0009826 GO:0009888 GO:0009892 GO:0009987 GO:0010087 GO:0010286 GO:0010468 GO:0010494 GO:0010586 GO:0010587 GO:0010605 GO:0010629 GO:0016043 GO:0016049 GO:0016070 GO:0016071 GO:0016787 GO:0016788 GO:0016796 GO:0016896 GO:0019222 GO:0019439 GO:0031086 GO:0031087 GO:0032502 GO:0032989 GO:0032991 GO:0033554 GO:0034605 GO:0034641 GO:0034655 GO:0034660 GO:0034661 GO:0035770 GO:0036464 GO:0040007 GO:0040029 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046700 GO:0048519 GO:0048589 GO:0048856 GO:0048869 GO:0050789 GO:0050896 GO:0051301 GO:0051716 GO:0060255 GO:0060560 GO:0065007 GO:0070370 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0090501 GO:0090503 GO:0097159 GO:0140098 GO:1901360 GO:1901361 GO:1901363 GO:1901575 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03008 ko03018 ko04016 map03008 map03018 map04016

Pfam Domains

Protein Families

XRN_N zf-CCHC

Protein Analysis

985

Amino Acids

113.08

Weight (kDa)

6.67

Isoelectric Point (pI)

49.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
XRN_N	PF03159	1 - 254	3.7e-100	XRN 5'-3' exonuclease N-terminus
XRN_M	PF17846	320 - 414	1.1e-40	Xrn1 helical domain
XRN_M	PF17846	437 - 730	1.8e-116	Xrn1 helical domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007016)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G54490 AT1G54490
fragaria_vesca	FvH4_6g03690 FvH4_6g03690
malus_domestica	MD04G1219200.v1.1 MD12G1236200.v1.1
prunus_persica	Prupe.6G338500_v2.0.a1 Prupe.6G338500_v2.0.a1
pyrus_communis	pycom04g19450 pycom12g21730
rosa_chinensis	RchiOBHm_Chr3g0452231
rosa_laevigata	RLG00000025615
rosa_multiflora	Rmu_sc0037132.1_g000001 Rmu_sc0041263.1_g000001
rosa_roxburghii	Rroxscaffold_164G00435930 Rroxscaffold_6G00429350
rosa_rugosa	Rorug02G0639400
rosa_samantha	Rh3AG041300 Rh3BG043000 Rh3BG043200 Rh3CG041400 Rh3CG041600 Rh3DG042300 Rh3DG042500
rosa_wichuraiana	Rw3G003160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	813, 1687
Acc36I	ACCTGC	2 cut(s)	217, 2875
Acc65I	GGTACC	1 cut(s)	39
AccB1I	GGYRCC	2 cut(s)	39, 851
AccB7I	CCANNNNNTGG	1 cut(s)	2480
AccBSI	CCGCTC	2 cut(s)	46, 1319
AccI	GTMKAC	3 cut(s)	57, 234, 572
AccII	CGCG	3 cut(s)	14, 121, 2371
AccIII	TCCGGA	1 cut(s)	2939
AclI	AACGTT	1 cut(s)	600
AclWI	GGATC	6 cut(s)	42, 662, 1679, 2370, 2666, 2912
AcoI	YGGCCR	2 cut(s)	122, 202
AcsI	RAATTY	5 cut(s)	416, 1188, 1209, 1672, 2485
AcuI	CTGAAG	3 cut(s)	414, 450, 509
AcvI	CACGTG	1 cut(s)	2915
AcyI	GRCGYC	2 cut(s)	6, 1904
AfaI	GTAC	4 cut(s)	41, 1922, 2531, 2639
AfeI	AGCGCT	1 cut(s)	1748
AflIII	ACRYGT	1 cut(s)	1951
AgsI	TTSAA	6 cut(s)	474, 550, 968, 1196, 1424, 2809
AjiI	CACGTC	1 cut(s)	61
AjuI	GAANNNNNNNTTGG	4 cut(s)	1763, 1795, 2819, 2851
AloI	GAACNNNNNNTCC	2 cut(s)	2683, 2715
Alw21I	GWGCWC	3 cut(s)	621, 1654, 2527
Alw26I	GTCTC	6 cut(s)	97, 416, 1273, 1911, 1988, 2703
AlwI	GGATC	6 cut(s)	42, 662, 1679, 2370, 2666, 2912
Aor13HI	TCCGGA	1 cut(s)	2939
Aor51HI	AGCGCT	1 cut(s)	1748
AoxI	GGCC	7 cut(s)	122, 202, 1257, 2252, 2372, 2438, 2516
ApeKI	GCWGC	4 cut(s)	365, 824, 1637, 2297
ApoI	RAATTY	5 cut(s)	416, 1188, 1209, 1672, 2485
AseI	ATTAAT	1 cut(s)	1062
Asp700I	GAANNNNTTC	2 cut(s)	2003, 2386
Asp718I	GGTACC	1 cut(s)	39
AspLEI	GCGC	5 cut(s)	322, 1185, 1749, 2235, 2780
AspS9I	GGNCC	6 cut(s)	85, 2225, 2279, 2438, 2517, 2870
AsuC2I	CCSGG	4 cut(s)	660, 2201, 2230, 2437
AsuHPI	GGTGA	9 cut(s)	620, 775, 809, 863, 1139, 1981, 2043, 2303, 2601
AsuNHI	GCTAGC	1 cut(s)	1846
AvaII	GGWCC	4 cut(s)	85, 2225, 2279, 2870
AxyI	CCTNAGG	2 cut(s)	2499, 2922
BanI	GGYRCC	2 cut(s)	39, 851
BanII	GRGCYC	3 cut(s)	1207, 1946, 2527
BbrPI	CACGTG	1 cut(s)	2915
BbsI	GAAGAC	1 cut(s)	2223
Bbv12I	GWGCWC	3 cut(s)	621, 1654, 2527
BbvCI	CCTCAGC	1 cut(s)	381
BbvI	GCAGC	4 cut(s)	352, 836, 1624, 2309
BccI	CCATC	7 cut(s)	189, 194, 305, 842, 1723, 2056, 2449
BceAI	ACGGC	2 cut(s)	109, 187
BcgI	CGANNNNNNTGC	4 cut(s)	332, 366, 833, 867
BciVI	GTATCC	1 cut(s)	2729
BclI	TGATCA	3 cut(s)	259, 1612, 2154
BcnI	CCSGG	4 cut(s)	660, 2201, 2230, 2437
BcoDI	GTCTC	6 cut(s)	97, 416, 1273, 1911, 1988, 2703
BfaI	CTAG	5 cut(s)	1139, 1847, 2337, 2514, 2664
BfmI	CTRYAG	3 cut(s)	2115, 2543, 2703
BfoI	RGCGCY	4 cut(s)	1186, 1750, 2236, 2781
BfuAI	ACCTGC	2 cut(s)	217, 2875
BfuI	GTATCC	1 cut(s)	2729
BglII	AGATCT	1 cut(s)	706
BisI	GCNGC	7 cut(s)	122, 366, 378, 825, 1638, 2298, 2372
BlsI	GCNGC	7 cut(s)	123, 367, 379, 826, 1639, 2299, 2373
Bme18I	GGWCC	4 cut(s)	85, 2225, 2279, 2870
BmgBI	CACGTC	1 cut(s)	61
BmgT120I	GGNCC	6 cut(s)	85, 2225, 2279, 2438, 2517, 2870
BmiI	GGNNCC	8 cut(s)	41, 87, 444, 853, 1362, 1627, 2227, 2856
BmsI	GCATC	9 cut(s)	364, 583, 691, 1062, 1111, 1854, 2354, 2514, 2712
BmtI	GCTAGC	1 cut(s)	1850
BoxI	GACNNNNGTC	1 cut(s)	2223
BpiI	GAAGAC	1 cut(s)	2223
BpmI	CTGGAG	2 cut(s)	471, 2286
Bpu10I	CCTNAGC	1 cut(s)	381
BpuEI	CTTGAG	1 cut(s)	2668
BpuMI	CCSGG	4 cut(s)	660, 2201, 2230, 2437
BsaAI	YACGTR	1 cut(s)	2915
BsaBI	GATNNNNATC	1 cut(s)	705
BsaHI	GRCGYC	2 cut(s)	6, 1904
BsaI	GGTCTC	2 cut(s)	97, 2703
BsaWI	WCCGGW	3 cut(s)	214, 1321, 2939
BsaXI	ACNNNNNCTCC	2 cut(s)	2683, 2713
Bse1I	ACTGG	3 cut(s)	1162, 2414, 2786
Bse21I	CCTNAGG	2 cut(s)	2499, 2922
Bse3DI	GCAATG	2 cut(s)	1018, 1517
Bse8I	GATNNNNATC	1 cut(s)	705
BseAI	TCCGGA	1 cut(s)	2939
BseJI	GATNNNNATC	1 cut(s)	705
BseMI	GCAATG	2 cut(s)	1018, 1517
BseMII	CTCAG	8 cut(s)	372, 528, 1380, 1820, 1999, 2135, 2513, 2936
BseNI	ACTGG	3 cut(s)	1162, 2414, 2786
BseRI	GAGGAG	1 cut(s)	1430
BseXI	GCAGC	4 cut(s)	352, 836, 1624, 2309
BsgI	GTGCAG	1 cut(s)	2786
Bsh1236I	CGCG	3 cut(s)	14, 121, 2371
Bsh1285I	CGRYCG	3 cut(s)	54, 559, 644
BshFI	GGCC	7 cut(s)	124, 204, 1259, 2254, 2374, 2440, 2518
BshNI	GGYRCC	2 cut(s)	39, 851
BsiEI	CGRYCG	3 cut(s)	54, 559, 644
BsiHKAI	GWGCWC	3 cut(s)	621, 1654, 2527
BsiSI	CCGG	7 cut(s)	215, 659, 1322, 2201, 2230, 2436, 2940
BslFI	GGGAC	1 cut(s)	2211
BsmAI	GTCTC	6 cut(s)	97, 416, 1273, 1911, 1988, 2703
BsmBI	CGTCTC	2 cut(s)	416, 1911
BsmFI	GGGAC	1 cut(s)	2211
BsnI	GGCC	7 cut(s)	124, 204, 1259, 2254, 2374, 2440, 2518
Bso31I	GGTCTC	2 cut(s)	97, 2703
Bsp1286I	GDGCHC	5 cut(s)	621, 1207, 1654, 1946, 2527
Bsp13I	TCCGGA	1 cut(s)	2939
Bsp19I	CCATGG	1 cut(s)	1964
BspANI	GGCC	7 cut(s)	124, 204, 1259, 2254, 2374, 2440, 2518
BspCNI	CTCAG	8 cut(s)	373, 527, 1381, 1819, 1998, 2134, 2512, 2935
BspEI	TCCGGA	1 cut(s)	2939
BspFNI	CGCG	3 cut(s)	14, 121, 2371
BspLI	GGNNCC	8 cut(s)	41, 87, 444, 853, 1362, 1627, 2227, 2856
BspMAI	CTGCAG	1 cut(s)	2547
BspMI	ACCTGC	2 cut(s)	217, 2875
BspOI	GCTAGC	1 cut(s)	1850
BspPI	GGATC	6 cut(s)	42, 662, 1679, 2370, 2666, 2912
BspQI	GCTCTTC	4 cut(s)	1302, 1659, 1836, 2787
BspT107I	GGYRCC	2 cut(s)	39, 851
BspTNI	GGTCTC	2 cut(s)	97, 2703
BsrBI	CCGCTC	2 cut(s)	46, 1319
BsrDI	GCAATG	2 cut(s)	1018, 1517
BsrI	ACTGG	3 cut(s)	1162, 2414, 2786
BssNAI	GTATAC	1 cut(s)	235
BssNI	GRCGYC	2 cut(s)	6, 1904
BssT1I	CCWWGG	2 cut(s)	1492, 1964
Bst1107I	GTATAC	1 cut(s)	235
Bst4CI	ACNGT	3 cut(s)	560, 1429, 2637
Bst6I	CTCTTC	9 cut(s)	272, 777, 1081, 1269, 1288, 1302, 1659, 1836, 2787
BstACI	GRCGYC	2 cut(s)	6, 1904
BstAPI	GCANNNNNTGC	2 cut(s)	374, 2764
BstBAI	YACGTR	1 cut(s)	2915
BstDEI	CTNAG	9 cut(s)	381, 514, 1389, 1806, 1985, 2121, 2330, 2499, 2922
BstDSI	CCRYGG	3 cut(s)	559, 1964, 2369
BstEII	GGTNACC	1 cut(s)	815
BstFNI	CGCG	3 cut(s)	14, 121, 2371
BstH2I	RGCGCY	4 cut(s)	1186, 1750, 2236, 2781
BstHHI	GCGC	5 cut(s)	322, 1185, 1749, 2235, 2780
BstMAI	GTCTC	6 cut(s)	97, 416, 1273, 1911, 1988, 2703
BstMCI	CGRYCG	3 cut(s)	54, 559, 644
BstMWI	GCNNNNNNNGC	7 cut(s)	326, 374, 383, 928, 1541, 1873, 2764
BstNSI	RCATGY	1 cut(s)	1955
BstPAI	GACNNNNGTC	1 cut(s)	2223
BstPI	GGTNACC	1 cut(s)	815
BstSFI	CTRYAG	3 cut(s)	2115, 2543, 2703
BstUI	CGCG	3 cut(s)	14, 121, 2371
BstV1I	GCAGC	4 cut(s)	352, 836, 1624, 2309
BstV2I	GAAGAC	1 cut(s)	2223
BstX2I	RGATCY	2 cut(s)	706, 2658
BstYI	RGATCY	2 cut(s)	706, 2658
BstZ17I	GTATAC	1 cut(s)	235
Bsu36I	CCTNAGG	2 cut(s)	2499, 2922
BsuI	GTATCC	1 cut(s)	2729
BsuRI	GGCC	7 cut(s)	124, 204, 1259, 2254, 2374, 2440, 2518
BtgI	CCRYGG	3 cut(s)	559, 1964, 2369
BtgZI	GCGATG	1 cut(s)	858
BtrI	CACGTC	1 cut(s)	61
BtsIMutI	CAGTG	3 cut(s)	1116, 1993, 2793
BveI	ACCTGC	2 cut(s)	217, 2875
CfoI	GCGC	5 cut(s)	322, 1185, 1749, 2235, 2780
Cfr13I	GGNCC	6 cut(s)	85, 2225, 2279, 2438, 2517, 2870
Cfr42I	CCGCGG	1 cut(s)	2372
CseI	GACGC	1 cut(s)	1893
CsiI	ACCWGGT	2 cut(s)	1440, 2693
Csp6I	GTAC	4 cut(s)	40, 1921, 2530, 2638
CviQI	GTAC	4 cut(s)	40, 1921, 2530, 2638
DdeI	CTNAG	9 cut(s)	381, 514, 1389, 1806, 1985, 2121, 2330, 2499, 2922
DraI	TTTAAA	1 cut(s)	1603
DrdI	GACNNNNNNGTC	2 cut(s)	813, 1687
DseDI	GACNNNNNNGTC	2 cut(s)	813, 1687
EaeI	YGGCCR	2 cut(s)	122, 202
Eam1104I	CTCTTC	9 cut(s)	272, 777, 1081, 1269, 1288, 1302, 1659, 1836, 2787
EarI	CTCTTC	9 cut(s)	272, 777, 1081, 1269, 1288, 1302, 1659, 1836, 2787
EciI	GGCGGA	2 cut(s)	47, 401
Ecl136II	GAGCTC	1 cut(s)	2525
Eco130I	CCWWGG	2 cut(s)	1492, 1964
Eco147I	AGGCCT	1 cut(s)	1259
Eco24I	GRGCYC	3 cut(s)	1207, 1946, 2527
Eco31I	GGTCTC	2 cut(s)	97, 2703
Eco32I	GATATC	1 cut(s)	2188
Eco47I	GGWCC	4 cut(s)	85, 2225, 2279, 2870
Eco47III	AGCGCT	1 cut(s)	1748
Eco53kI	GAGCTC	1 cut(s)	2525
Eco57I	CTGAAG	3 cut(s)	414, 450, 509
Eco72I	CACGTG	1 cut(s)	2915
Eco81I	CCTNAGG	2 cut(s)	2499, 2922
Eco91I	GGTNACC	1 cut(s)	815
EcoICRI	GAGCTC	1 cut(s)	2525
EcoO109I	RGGNCCY	1 cut(s)	85
EcoO65I	GGTNACC	1 cut(s)	815
EcoRI	GAATTC	1 cut(s)	1209
EcoRV	GATATC	1 cut(s)	2188
EcoT14I	CCWWGG	2 cut(s)	1492, 1964
EcoT22I	ATGCAT	2 cut(s)	1077, 2347
EcoT38I	GRGCYC	3 cut(s)	1207, 1946, 2527
ErhI	CCWWGG	2 cut(s)	1492, 1964
Esp3I	CGTCTC	2 cut(s)	416, 1911
FalI	AAGNNNNNCTT	2 cut(s)	1285, 1317
FaqI	GGGAC	1 cut(s)	2211
FauI	CCCGC	5 cut(s)	19, 51, 1117, 1194, 1324
FauNDI	CATATG	2 cut(s)	1029, 2875
FbaI	TGATCA	3 cut(s)	259, 1612, 2154
FblI	GTMKAC	3 cut(s)	57, 234, 572
Fnu4HI	GCNGC	7 cut(s)	122, 366, 378, 825, 1638, 2298, 2372
FriOI	GRGCYC	3 cut(s)	1207, 1946, 2527
Fsp4HI	GCNGC	7 cut(s)	122, 366, 378, 825, 1638, 2298, 2372
FspBI	CTAG	5 cut(s)	1139, 1847, 2337, 2514, 2664
GlaI	GCGC	5 cut(s)	321, 1184, 1748, 2234, 2779
GluI	GCNGC	7 cut(s)	122, 366, 378, 825, 1638, 2298, 2372
GsuI	CTGGAG	2 cut(s)	471, 2286
HaeII	RGCGCY	4 cut(s)	1186, 1750, 2236, 2781
HaeIII	GGCC	7 cut(s)	124, 204, 1259, 2254, 2374, 2440, 2518
HapII	CCGG	7 cut(s)	215, 659, 1322, 2201, 2230, 2436, 2940
HgaI	GACGC	1 cut(s)	1893
HhaI	GCGC	5 cut(s)	322, 1185, 1749, 2235, 2780
Hin1I	GRCGYC	2 cut(s)	6, 1904
Hin6I	GCGC	5 cut(s)	320, 1183, 1747, 2233, 2778
HinP1I	GCGC	5 cut(s)	320, 1183, 1747, 2233, 2778
HincII	GTYRAC	3 cut(s)	58, 782, 2419
HindII	GTYRAC	3 cut(s)	58, 782, 2419
HindIII	AAGCTT	1 cut(s)	290
HinfI	GANTC	7 cut(s)	337, 434, 470, 1298, 2004, 2816, 2835
HpaII	CCGG	7 cut(s)	215, 659, 1322, 2201, 2230, 2436, 2940
HphI	GGTGA	9 cut(s)	620, 775, 809, 863, 1139, 1981, 2043, 2303, 2601
Hpy166II	GTNNAC	9 cut(s)	58, 235, 573, 742, 782, 806, 1342, 2419, 2870
Hpy8I	GTNNAC	9 cut(s)	58, 235, 573, 742, 782, 806, 1342, 2419, 2870
Hpy99I	CGWCG	4 cut(s)	59, 62, 116, 357
HpyAV	CCTTC	3 cut(s)	665, 1454, 1899
HpyCH4III	ACNGT	3 cut(s)	560, 1429, 2637
HpyCH4IV	ACGT	7 cut(s)	60, 114, 231, 355, 457, 600, 2914
HpyF10VI	GCNNNNNNNGC	7 cut(s)	326, 374, 383, 928, 1541, 1873, 2764
HpyF3I	CTNAG	9 cut(s)	381, 514, 1389, 1806, 1985, 2121, 2330, 2499, 2922
HpySE526I	ACGT	7 cut(s)	60, 114, 231, 355, 457, 600, 2914
Hsp92I	GRCGYC	2 cut(s)	6, 1904
HspAI	GCGC	5 cut(s)	320, 1183, 1747, 2233, 2778
Kpn2I	TCCGGA	1 cut(s)	2939
KpnI	GGTACC	1 cut(s)	43
Ksp22I	TGATCA	3 cut(s)	259, 1612, 2154
KspI	CCGCGG	1 cut(s)	2372
LguI	GCTCTTC	4 cut(s)	1302, 1659, 1836, 2787
LmnI	GCTCC	7 cut(s)	217, 616, 1324, 1360, 1540, 2267, 2530
Lsp1109I	GCAGC	4 cut(s)	352, 836, 1624, 2309
LweI	GCATC	9 cut(s)	364, 583, 691, 1062, 1111, 1854, 2354, 2514, 2712
MabI	ACCWGGT	2 cut(s)	1440, 2693
MaeI	CTAG	5 cut(s)	1139, 1847, 2337, 2514, 2664
MaeII	ACGT	7 cut(s)	60, 114, 231, 355, 457, 600, 2914
MaeIII	GTNAC	4 cut(s)	217, 815, 2098, 2549
MbiI	CCGCTC	2 cut(s)	46, 1319
MfeI	CAATTG	2 cut(s)	306, 2271
MflI	RGATCY	2 cut(s)	706, 2658
MhlI	GDGCHC	5 cut(s)	621, 1207, 1654, 1946, 2527
MlyI	GAGTC	1 cut(s)	1307
Mph1103I	ATGCAT	2 cut(s)	1077, 2347
MroI	TCCGGA	1 cut(s)	2939
MroXI	GAANNNNTTC	2 cut(s)	2003, 2386
MslI	CAYNNNNRTG	4 cut(s)	198, 902, 1238, 1510
MspA1I	CMGCKG	4 cut(s)	24, 827, 1637, 2371
MspI	CCGG	7 cut(s)	215, 659, 1322, 2201, 2230, 2436, 2940
MunI	CAATTG	2 cut(s)	306, 2271
MvnI	CGCG	3 cut(s)	14, 121, 2371
MwoI	GCNNNNNNNGC	7 cut(s)	326, 374, 383, 928, 1541, 1873, 2764
NciI	CCSGG	4 cut(s)	660, 2201, 2230, 2437
NcoI	CCATGG	1 cut(s)	1964
NdeI	CATATG	2 cut(s)	1029, 2875
NheI	GCTAGC	1 cut(s)	1846
NlaIV	GGNNCC	8 cut(s)	41, 87, 444, 853, 1362, 1627, 2227, 2856
NmeAIII	GCCGAG	2 cut(s)	126, 658
NmuCI	GTSAC	1 cut(s)	815
NsiI	ATGCAT	2 cut(s)	1077, 2347
NspI	RCATGY	1 cut(s)	1955
PasI	CCCWGGG	2 cut(s)	78, 2145
PceI	AGGCCT	1 cut(s)	1259
PciI	ACATGT	1 cut(s)	1951
PciSI	GCTCTTC	4 cut(s)	1302, 1659, 1836, 2787
PcsI	WCGNNNNNNNCGW	2 cut(s)	63, 352
PdmI	GAANNNNTTC	2 cut(s)	2003, 2386
PfeI	GAWTC	6 cut(s)	337, 434, 470, 2004, 2816, 2835
PflFI	GACNNNGTC	1 cut(s)	62
PflMI	CCANNNNNTGG	1 cut(s)	2480
PfoI	TCCNGGA	1 cut(s)	2731
PkrI	GCNGC	7 cut(s)	123, 367, 379, 826, 1639, 2299, 2373
Ple19I	CGATCG	2 cut(s)	54, 644
PleI	GAGTC	1 cut(s)	1306
PmaCI	CACGTG	1 cut(s)	2915
PmlI	CACGTG	1 cut(s)	2915
PpsI	GAGTC	1 cut(s)	1306
Ppu21I	YACGTR	1 cut(s)	2915
PpuMI	RGGWCCY	1 cut(s)	85
PscI	ACATGT	1 cut(s)	1951
PshAI	GACNNNNGTC	1 cut(s)	2223
PshBI	ATTAAT	1 cut(s)	1062
Psp124BI	GAGCTC	1 cut(s)	2527
Psp1406I	AACGTT	1 cut(s)	600
Psp5II	RGGWCCY	1 cut(s)	85
PspCI	CACGTG	1 cut(s)	2915
PspEI	GGTNACC	1 cut(s)	815
PspN4I	GGNNCC	8 cut(s)	41, 87, 444, 853, 1362, 1627, 2227, 2856
PspPI	GGNCC	6 cut(s)	85, 2225, 2279, 2438, 2517, 2870
PspPPI	RGGWCCY	1 cut(s)	85
PstI	CTGCAG	1 cut(s)	2547
PsuI	RGATCY	2 cut(s)	706, 2658
PsyI	GACNNNGTC	1 cut(s)	62
PvuI	CGATCG	2 cut(s)	54, 644
PvuII	CAGCTG	2 cut(s)	827, 1637
RsaI	GTAC	4 cut(s)	41, 1922, 2531, 2639
RsaNI	GTAC	4 cut(s)	40, 1921, 2530, 2638
RseI	CAYNNNNRTG	4 cut(s)	198, 902, 1238, 1510
SacI	GAGCTC	1 cut(s)	2527
SacII	CCGCGG	1 cut(s)	2372
SalI	GTCGAC	1 cut(s)	56
SapI	GCTCTTC	4 cut(s)	1302, 1659, 1836, 2787
SatI	GCNGC	7 cut(s)	122, 366, 378, 825, 1638, 2298, 2372
Sau96I	GGNCC	6 cut(s)	85, 2225, 2279, 2438, 2517, 2870
SchI	GAGTC	1 cut(s)	1307
SduI	GDGCHC	5 cut(s)	621, 1207, 1654, 1946, 2527
SexAI	ACCWGGT	2 cut(s)	1440, 2693
SfaNI	GCATC	9 cut(s)	364, 583, 691, 1062, 1111, 1854, 2354, 2514, 2712
SfcI	CTRYAG	3 cut(s)	2115, 2543, 2703
Sfr303I	CCGCGG	1 cut(s)	2372
SgrBI	CCGCGG	1 cut(s)	2372
SgrDI	CGTCGACG	1 cut(s)	56
SinI	GGWCC	4 cut(s)	85, 2225, 2279, 2870
SmiMI	CAYNNNNRTG	4 cut(s)	198, 902, 1238, 1510
SmlI	CTYRAG	1 cut(s)	2647
SmoI	CTYRAG	1 cut(s)	2647
SseBI	AGGCCT	1 cut(s)	1259
SspI	AATATT	2 cut(s)	246, 753
SspMI	CTAG	5 cut(s)	1139, 1847, 2337, 2514, 2664
SstI	GAGCTC	1 cut(s)	2527
StuI	AGGCCT	1 cut(s)	1259
StyI	CCWWGG	2 cut(s)	1492, 1964
TaaI	ACNGT	3 cut(s)	560, 1429, 2637
TaiI	ACGT	7 cut(s)	63, 117, 234, 358, 460, 603, 2917
TatI	WGTACW	1 cut(s)	1920
TauI	GCSGC	3 cut(s)	124, 380, 2374
TfiI	GAWTC	6 cut(s)	337, 434, 470, 2004, 2816, 2835
TscAI	CASTG	3 cut(s)	1123, 1993, 2793
TseFI	GTSAC	1 cut(s)	815
TseI	GCWGC	4 cut(s)	365, 824, 1637, 2297
Tsp45I	GTSAC	1 cut(s)	815
TspGWI	ACGGA	5 cut(s)	440, 1677, 1850, 2453, 2517
TspRI	CASTG	3 cut(s)	1123, 1993, 2793
Tth111I	GACNNNGTC	1 cut(s)	62
Van91I	CCANNNNNTGG	1 cut(s)	2480
VpaK11BI	GGWCC	4 cut(s)	85, 2225, 2279, 2870
VspI	ATTAAT	1 cut(s)	1062
XapI	RAATTY	5 cut(s)	416, 1188, 1209, 1672, 2485
XceI	RCATGY	1 cut(s)	1955
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2799
XmiI	GTMKAC	3 cut(s)	57, 234, 572
XmnI	GAANNNNTTC	2 cut(s)	2003, 2386
XspI	CTAG	5 cut(s)	1139, 1847, 2337, 2514, 2664
Zsp2I	ATGCAT	2 cut(s)	1077, 2347

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.