Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0007016

Physical Location & Seq

Genomic Coordinates Reverse (-)

49647393 .. 49658176

Gene Structure 10784 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00429350.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2820 bp

ATGGGCGTCCCCGCGTTTTACCGCTGGCTGGCGGATCGGTACCCGCTCTCGATCGTCGACGTGGTGGAGGAACACCCCAGGGAGGACCCGAACGGCGTGCCGAGACCAATCGACGTCTCGAGGCCAAACCCTAACGGCTTCGAGTTCGATAACCTTTACCTCGACATGAACGGCATTATACATCCCTGTTTTCATCCCGACGGCCGACCTGCCCCTGCTACTTATCAGGACGTATTCAAGTCAATATTTGACTACATTGATCATCTCTTCACGCTGGTGCGCCCAAGAAAGCTTCTTTTTATGGCAATTGATGGAGTAGCACCAAGAGCTAAAATGAATCAGCAACGCTCTCGACGTTTCAGAGCTGCAAAAGATGCGGCTGAGGCGGAAGCTGAAGAGGAAAGACTAAAGAAAGAATTTGAGATGGAGGGGACATCATTGGTTTCTAAAGAGAAACCTGAAACTTTAGATTCAAATGTTATTACTCCAGGCACTCCATTTATGGCGGTGCTCTCAGTAGCACTTCAATATTATATACAATTAAAATTGAACAACGACCGTGGTTGGCGGTCTACAAAGGTTATTCTTTCTGATGCCAACGTTCCTGGCGAGGGAGAGCACAAAATAATGTCATACATACGATTGCAACGCAATCTTTTGGGTTCTGATCCTAACACTCGGCATTGTCTTTATGGTCTGGATGCAGATCTAATTATGCTTGCTTTAGCTACACATGAGGTTCACTTCTCAATATTAAGAGAGGTGATTACTCTTCCAGGTCAACAGGAAAAATGTTTTCTTTGTGGACAAGTTGGTCATCTGGCAGCTGAATGTCGTGGTGGAGATGATGGTGCGGCCGATGAAACTCCAGTTCACAAGAAGAAATATCAGTTCCTCAACATCTGGGTGTTGCGTGAATATTTGGAATACGAGCTGGACATACCCAATCCTCCTTTTCAGCTTAATTTTGAAAGGATAGTGGATGATTTTGTGTTTATGTGCTTTTTTGTTGGCAATGATTTTCTTCCACATATGCCAACATTGGAGATCAGAGAGGGTGCAATTAACCTATTGATGCATATTTATAGAAGAGAATTTTCTGCTATGGGTGGCTATCTCACTGATGCGGGTGAGGTATTGTTAGATAGAGTAGAGCATTTTATCCAGTCTGTTGCTGTCTATGAGCGCCAAATTTTTCAAAAGCGGGCTCGAATTCAGCAGACTGATGTTTTAGTTTACTCTTCAACTGTTCTGGTGATTATCTGGCTACAATGGAATTCAAATGTGAAAAATGCTTTTGAGAATAATGAAGAGAGACAGAGAAATAGAAGAGAGGCTTGTGAAGAGCTACCGGCTCCAGTGGTAGAAAAGGTGGTGGACAAGGTTCTAAAATATGTAGAAGGCTTATGCTGGGTCTGCCGATATTACTACCAAGGGGTTTGGTCATGGCAATGGTATTATCCATACCATTATGCTCCTTTTGCTTCTGATCTAAAAGATCTAGATGATTGTAGTGCTCTTCCAGAAAAATACAGAAATTTGATGACTGATCCGTCATCTCCCATTTGTCATTTCTACCCATCTGATTTTGAGATTGACATGAATGGCAAGCGCTTTGCATGGCAGGGCATTGCCAAATTGCCATTCATTGATGAGAAGAAATTGCTTGCTCAGACAAGGAAGCTTGAAAGCACTTTAACGGAGGAAGAGAAAGCTCGAAATAGCGTGATGCTTGATTTGCTTTATGTCTATCCTTCTCATCCTCTGGCGTCGGAGATTATTTTCTACTACCATTTATGTTATCTGTGTCCCCCACATGAAAGATTGCCACATGCGATAAATACTAATCTTAGTGGTGGAATGAATGGATTCCTTTGGTTATCTGAGAGGAATGGCTTTAGAAACGTAATCCCTTCCCCTGTGCATGGTTTTCCCAACATAGACTATAACGAAGTCTTAAATGTTACATATCTTAGCCCTGCAGCTCAAAAACACATCCCAGAACCTCCCGAGGGTGTGATCATGCCCAGAAAGGTTGTAAAACCTACGGATATCAAACCTCCCCCTGCATTATGGCATGAAGACAATGGTCCCCGACGCTACCAAAACAGAGATAGGCCACAAATACCTGGAGCAATTGCTGGAACTGTGTTGGGAGAAGCAGCTCATCGACTTGTCAAGAACACACTAAATCTTAGACCTAGTAATCCATCCTCTGGATTTTGGGATCAATCACAGCCTTTAAGAGCTTCTTCTGGAAACTACAATGGAAACTATCCAGTCAACAGACCAAGACCAGCTGGGCCATCTGGGTATGAAAGGGGTTTCCGTGAAGAACCAAATTATGGAAATTCTTTTAATCCTCAGGGCATCATGGCTAGGCCCAGAGCTCCTTACTCAAATGGTGTGCAGGGTGACAGACAGAGTTTTAGGACACAAGAAAGAACACAGTATCAAGAGCAGGGTTTTAGAGGACAAGAAAGAATACAATATCAAGAACAGTACCGCAACATGAGAACTGGGATGTCTGGTTTAACAATGGAAGTAAGTGTGAGAACCAGGTCTCCTGTAGTGGCGCAACCAGGGATGCCAAATTCAGGATACTCCACAAACCCACATCAGCAGTTTGTGCAGAACATGGGCGCTCTTCCAGCGCCACCTACAAAGTGGATCAACAAAGAATCGAGTGCCAATGGTGGGATTTATGGTAGGCATCAGGAAACCGGATATGGCGGACCATATGAGCAGCAGGTGAAAAAGGTTTATCAGGTAAAGACACGTCCTCCTCAGGACTTGTCAAACTCTGGAAACCAGGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000291 GO:0000902 GO:0000932 GO:0000956 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003824 GO:0004518 GO:0004527 GO:0004532 GO:0004534 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005844 GO:0006139 GO:0006401 GO:0006402 GO:0006725 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0008409 GO:0009056 GO:0009057 GO:0009266 GO:0009408 GO:0009628 GO:0009653 GO:0009826 GO:0009888 GO:0009892 GO:0009987 GO:0010087 GO:0010286 GO:0010468 GO:0010494 GO:0010586 GO:0010587 GO:0010605 GO:0010629 GO:0016043 GO:0016049 GO:0016070 GO:0016071 GO:0016787 GO:0016788 GO:0016796 GO:0016896 GO:0019222 GO:0019439 GO:0031086 GO:0031087 GO:0032502 GO:0032989 GO:0032991 GO:0033554 GO:0034605 GO:0034641 GO:0034655 GO:0034660 GO:0034661 GO:0035770 GO:0036464 GO:0040007 GO:0040029 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046700 GO:0048519 GO:0048589 GO:0048856 GO:0048869 GO:0050789 GO:0050896 GO:0051301 GO:0051716 GO:0060255 GO:0060560 GO:0065007 GO:0070370 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0090501 GO:0090503 GO:0097159 GO:0140098 GO:1901360 GO:1901361 GO:1901363 GO:1901575 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03008 ko03018 ko04016 map03008 map03018 map04016

Pfam Domains

Protein Families

XRN_N zf-CCHC

Protein Analysis

939

Amino Acids

107.66

Weight (kDa)

6.52

Isoelectric Point (pI)

46.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
XRN_N	PF03159	1 - 254	5.8e-99	XRN 5'-3' exonuclease N-terminus
XRN_M	PF17846	321 - 409	1.1e-40	Xrn1 helical domain
XRN_M	PF17846	460 - 504	6e-22	Xrn1 helical domain
XRN_M	PF17846	505 - 685	1.1e-52	Xrn1 helical domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0007016)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G54490 AT1G54490
fragaria_vesca	FvH4_6g03690 FvH4_6g03690
malus_domestica	MD04G1219200.v1.1 MD12G1236200.v1.1
prunus_persica	Prupe.6G338500_v2.0.a1 Prupe.6G338500_v2.0.a1
pyrus_communis	pycom04g19450 pycom12g21730
rosa_chinensis	RchiOBHm_Chr3g0452231
rosa_laevigata	RLG00000025615
rosa_multiflora	Rmu_sc0037132.1_g000001 Rmu_sc0041263.1_g000001
rosa_roxburghii	Rroxscaffold_164G00435930 Rroxscaffold_6G00429350
rosa_rugosa	Rorug02G0639400
rosa_samantha	Rh3AG041300 Rh3BG043000 Rh3BG043200 Rh3CG041400 Rh3CG041600 Rh3DG042300 Rh3DG042500
rosa_wichuraiana	Rw3G003160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	2740
AasI	GACNNNNNNGTC	2 cut(s)	813, 1552
AatII	GACGTC	1 cut(s)	117
Acc36I	ACCTGC	2 cut(s)	217, 2740
Acc65I	GGTACC	1 cut(s)	39
AccB1I	GGYRCC	1 cut(s)	39
AccB7I	CCANNNNNTGG	2 cut(s)	2216, 2345
AccBSI	CCGCTC	1 cut(s)	46
AccI	GTMKAC	2 cut(s)	57, 572
AccII	CGCG	1 cut(s)	14
AclI	AACGTT	1 cut(s)	600
AclWI	GGATC	5 cut(s)	42, 662, 1544, 2235, 2678
AcoI	YGGCCR	2 cut(s)	202, 855
AcsI	RAATTY	8 cut(s)	416, 1094, 1191, 1212, 1276, 1537, 2350, 2593
AcuI	CTGAAG	1 cut(s)	414
AcyI	GRCGYC	3 cut(s)	6, 114, 1769
AfaI	GTAC	2 cut(s)	41, 2504
AfeI	AGCGCT	1 cut(s)	1613
AfiI	CCNNNNNNNGG	9 cut(s)	28, 82, 611, 1925, 2012, 2216, 2345, 2597, 2697
AflIII	ACRYGT	1 cut(s)	2777
AgsI	TTSAA	9 cut(s)	238, 474, 527, 550, 971, 1199, 1245, 1281, 1688
AjiI	CACGTC	2 cut(s)	61, 2780
AjnI	CCWGG	8 cut(s)	77, 487, 604, 775, 2128, 2558, 2581, 2811
AjuI	GAANNNNNNNTTGG	2 cut(s)	1628, 1660
AleI	CACNNNNGTG	1 cut(s)	275
AloI	GAACNNNNNNTCC	2 cut(s)	2548, 2580
Alw21I	GWGCWC	4 cut(s)	513, 621, 1519, 2392
Alw26I	GTCTC	4 cut(s)	97, 121, 1309, 2568
AlwI	GGATC	5 cut(s)	42, 662, 1544, 2235, 2678
Ama87I	CYCGRG	2 cut(s)	118, 2009
Aor51HI	AGCGCT	1 cut(s)	1613
AoxI	GGCC	6 cut(s)	122, 202, 855, 2117, 2303, 2381
ApeKI	GCWGC	5 cut(s)	365, 824, 1982, 2162, 2746
ApoI	RAATTY	8 cut(s)	416, 1094, 1191, 1212, 1276, 1537, 2350, 2593
Asp700I	GAANNNNTTC	1 cut(s)	1868
Asp718I	GGTACC	1 cut(s)	39
AspLEI	GCGC	6 cut(s)	282, 1188, 1614, 2578, 2645, 2656
AspS9I	GGNCC	5 cut(s)	85, 2090, 2303, 2382, 2735
AsuHPI	GGTGA	5 cut(s)	775, 1142, 1267, 2426, 2764
AvaI	CYCGRG	2 cut(s)	118, 2009
AvaII	GGWCC	3 cut(s)	85, 2090, 2735
AxyI	CCTNAGG	2 cut(s)	2364, 2787
BanI	GGYRCC	1 cut(s)	39
BanII	GRGCYC	2 cut(s)	1210, 2392
BbsI	GAAGAC	1 cut(s)	2088
Bbv12I	GWGCWC	4 cut(s)	513, 621, 1519, 2392
BbvCI	CCTCAGC	1 cut(s)	381
BbvI	GCAGC	5 cut(s)	352, 836, 1994, 2174, 2758
BccI	CCATC	6 cut(s)	305, 418, 842, 1588, 2218, 2314
BceAI	ACGGC	4 cut(s)	109, 151, 187, 217
BcgI	CGANNNNNNTGC	4 cut(s)	79, 113, 332, 366
BciT130I	CCWGG	8 cut(s)	79, 489, 606, 777, 2130, 2560, 2583, 2813
BciVI	GTATCC	1 cut(s)	2594
BclI	TGATCA	2 cut(s)	259, 2019
BcoDI	GTCTC	4 cut(s)	97, 121, 1309, 2568
BfaI	CTAG	3 cut(s)	1502, 2202, 2379
BfmI	CTRYAG	2 cut(s)	1980, 2568
BfoI	RGCGCY	4 cut(s)	1189, 1615, 2646, 2657
BfuAI	ACCTGC	2 cut(s)	217, 2740
BfuI	GTATCC	1 cut(s)	2594
BglII	AGATCT	2 cut(s)	706, 1498
BisI	GCNGC	7 cut(s)	366, 378, 825, 855, 1983, 2163, 2747
BlsI	GCNGC	7 cut(s)	367, 379, 826, 856, 1984, 2164, 2748
Bme1390I	CCNGG	8 cut(s)	79, 489, 606, 777, 2130, 2560, 2583, 2813
Bme18I	GGWCC	3 cut(s)	85, 2090, 2735
BmeT110I	CYCGRG	2 cut(s)	118, 2009
BmgBI	CACGTC	2 cut(s)	61, 2780
BmgT120I	GGNCC	5 cut(s)	85, 2090, 2303, 2382, 2735
BmiI	GGNNCC	4 cut(s)	41, 87, 1356, 2092
BmrFI	CCNGG	8 cut(s)	79, 489, 606, 777, 2130, 2560, 2583, 2813
BmrI	ACTGGG	1 cut(s)	2529
BmsI	GCATC	9 cut(s)	364, 583, 691, 1065, 1114, 1719, 2379, 2577, 2722
BmuI	ACTGGG	1 cut(s)	2529
BoxI	GACNNNNGTC	1 cut(s)	2088
BpiI	GAAGAC	1 cut(s)	2088
BpmI	CTGGAG	4 cut(s)	471, 852, 1341, 2151
Bpu10I	CCTNAGC	1 cut(s)	381
BsaBI	GATNNNNATC	1 cut(s)	705
BsaHI	GRCGYC	3 cut(s)	6, 114, 1769
BsaI	GGTCTC	2 cut(s)	97, 2568
BsaJI	CCNNGG	6 cut(s)	77, 78, 559, 1432, 2010, 2582
BsaWI	WCCGGW	1 cut(s)	2723
BsaXI	ACNNNNNCTCC	4 cut(s)	2548, 2578, 2767, 2797
Bsc4I	CCNNNNNNNGG	9 cut(s)	28, 82, 611, 1925, 2012, 2216, 2345, 2597, 2697
Bse118I	RCCGGY	1 cut(s)	1351
Bse1I	ACTGG	5 cut(s)	869, 1165, 1358, 2279, 2524
Bse21I	CCTNAGG	2 cut(s)	2364, 2787
Bse3DI	GCAATG	3 cut(s)	1021, 1457, 1629
Bse8I	GATNNNNATC	1 cut(s)	705
BseBI	CCWGG	8 cut(s)	79, 489, 606, 777, 2130, 2560, 2583, 2813
BseDI	CCNNGG	6 cut(s)	77, 78, 559, 1432, 2010, 2582
BseGI	GGATG	9 cut(s)	181, 193, 706, 988, 1759, 1995, 2210, 2529, 2592
BseJI	GATNNNNATC	1 cut(s)	705
BseLI	CCNNNNNNNGG	9 cut(s)	28, 82, 611, 1925, 2012, 2216, 2345, 2597, 2697
BseMI	GCAATG	3 cut(s)	1021, 1457, 1629
BseMII	CTCAG	6 cut(s)	372, 528, 1685, 1875, 2378, 2801
BseNI	ACTGG	5 cut(s)	869, 1165, 1358, 2279, 2524
BseRI	GAGGAG	1 cut(s)	2775
BseX3I	CGGCCG	2 cut(s)	202, 855
BseXI	GCAGC	5 cut(s)	352, 836, 1994, 2174, 2758
BseYI	CCCAGC	2 cut(s)	1410, 2300
BsgI	GTGCAG	2 cut(s)	2429, 2651
Bsh1236I	CGCG	1 cut(s)	14
Bsh1285I	CGRYCG	4 cut(s)	54, 205, 559, 858
BshFI	GGCC	6 cut(s)	124, 204, 857, 2119, 2305, 2383
BshNI	GGYRCC	1 cut(s)	39
BsiEI	CGRYCG	4 cut(s)	54, 205, 559, 858
BsiHKAI	GWGCWC	4 cut(s)	513, 621, 1519, 2392
BsiHKCI	CYCGRG	2 cut(s)	118, 2009
BsiSI	CCGG	2 cut(s)	1352, 2724
BslFI	GGGAC	3 cut(s)	445, 1794, 2076
BslI	CCNNNNNNNGG	9 cut(s)	28, 82, 611, 1925, 2012, 2216, 2345, 2597, 2697
BsmAI	GTCTC	4 cut(s)	97, 121, 1309, 2568
BsmBI	CGTCTC	1 cut(s)	121
BsmFI	GGGAC	3 cut(s)	445, 1794, 2076
BsnI	GGCC	6 cut(s)	124, 204, 857, 2119, 2305, 2383
Bso31I	GGTCTC	2 cut(s)	97, 2568
BsoBI	CYCGRG	2 cut(s)	118, 2009
Bsp1286I	GDGCHC	5 cut(s)	513, 621, 1210, 1519, 2392
BspANI	GGCC	6 cut(s)	124, 204, 857, 2119, 2305, 2383
BspCNI	CTCAG	6 cut(s)	373, 527, 1684, 1876, 2377, 2800
BspFNI	CGCG	1 cut(s)	14
BspLI	GGNNCC	4 cut(s)	41, 87, 1356, 2092
BspMAI	CTGCAG	1 cut(s)	1984
BspMI	ACCTGC	2 cut(s)	217, 2740
BspPI	GGATC	5 cut(s)	42, 662, 1544, 2235, 2678
BspQI	GCTCTTC	3 cut(s)	1338, 1524, 2652
BspT107I	GGYRCC	1 cut(s)	39
BspTNI	GGTCTC	2 cut(s)	97, 2568
BsrBI	CCGCTC	1 cut(s)	46
BsrDI	GCAATG	3 cut(s)	1021, 1457, 1629
BsrFI	RCCGGY	1 cut(s)	1351
BsrI	ACTGG	5 cut(s)	869, 1165, 1358, 2279, 2524
BssAI	RCCGGY	1 cut(s)	1351
BssECI	CCNNGG	6 cut(s)	77, 78, 559, 1432, 2010, 2582
BssNI	GRCGYC	3 cut(s)	6, 114, 1769
BssT1I	CCWWGG	1 cut(s)	1432
Bst2UI	CCWGG	8 cut(s)	79, 489, 606, 777, 2130, 2560, 2583, 2813
Bst4CI	ACNGT	5 cut(s)	560, 1249, 2149, 2451, 2502
BstACI	GRCGYC	3 cut(s)	6, 114, 1769
BstAPI	GCANNNNNTGC	2 cut(s)	374, 2629
BstC8I	GCNNGC	7 cut(s)	26, 30, 98, 720, 1206, 1610, 1668
BstDEI	CTNAG	9 cut(s)	381, 514, 1671, 1850, 1884, 1973, 2195, 2364, 2787
BstDSI	CCRYGG	1 cut(s)	559
BstF5I	GGATG	9 cut(s)	181, 193, 706, 988, 1759, 1995, 2210, 2529, 2592
BstFNI	CGCG	1 cut(s)	14
BstH2I	RGCGCY	4 cut(s)	1189, 1615, 2646, 2657
BstHHI	GCGC	6 cut(s)	282, 1188, 1614, 2578, 2645, 2656
BstMAI	GTCTC	4 cut(s)	97, 121, 1309, 2568
BstMCI	CGRYCG	4 cut(s)	54, 205, 559, 858
BstMWI	GCNNNNNNNGC	8 cut(s)	326, 374, 383, 1416, 1481, 1738, 2629, 2651
BstNI	CCWGG	8 cut(s)	79, 489, 606, 777, 2130, 2560, 2583, 2813
BstNSI	RCATGY	1 cut(s)	1835
BstPAI	GACNNNNGTC	1 cut(s)	2088
BstSCI	CCNGG	8 cut(s)	77, 487, 604, 775, 2128, 2558, 2581, 2811
BstSFI	CTRYAG	2 cut(s)	1980, 2568
BstUI	CGCG	1 cut(s)	14
BstV1I	GCAGC	5 cut(s)	352, 836, 1994, 2174, 2758
BstV2I	GAAGAC	1 cut(s)	2088
BstX2I	RGATCY	2 cut(s)	706, 1498
BstYI	RGATCY	2 cut(s)	706, 1498
BstZI	CGGCCG	2 cut(s)	202, 855
Bsu36I	CCTNAGG	2 cut(s)	2364, 2787
BsuI	GTATCC	1 cut(s)	2594
BsuRI	GGCC	6 cut(s)	124, 204, 857, 2119, 2305, 2383
BtgI	CCRYGG	1 cut(s)	559
BtrI	CACGTC	2 cut(s)	61, 2780
BtsCI	GGATG	9 cut(s)	181, 193, 706, 988, 1759, 1995, 2210, 2529, 2592
BtsIMutI	CAGTG	2 cut(s)	1119, 1365
BveI	ACCTGC	2 cut(s)	217, 2740
Cac8I	GCNNGC	7 cut(s)	26, 30, 98, 720, 1206, 1610, 1668
CfoI	GCGC	6 cut(s)	282, 1188, 1614, 2578, 2645, 2656
Cfr10I	RCCGGY	1 cut(s)	1351
Cfr13I	GGNCC	5 cut(s)	85, 2090, 2303, 2382, 2735
CseI	GACGC	2 cut(s)	1758, 2106
CsiI	ACCWGGT	1 cut(s)	2558
Csp6I	GTAC	2 cut(s)	40, 2503
CspCI	CAANNNNNGTGG	2 cut(s)	541, 576
CviQI	GTAC	2 cut(s)	40, 2503
DdeI	CTNAG	9 cut(s)	381, 514, 1671, 1850, 1884, 1973, 2195, 2364, 2787
DrdI	GACNNNNNNGTC	2 cut(s)	813, 1552
DseDI	GACNNNNNNGTC	2 cut(s)	813, 1552
EaeI	YGGCCR	2 cut(s)	202, 855
EagI	CGGCCG	2 cut(s)	202, 855
EciI	GGCGGA	3 cut(s)	47, 401, 2748
Ecl136II	GAGCTC	1 cut(s)	2390
EclXI	CGGCCG	2 cut(s)	202, 855
Eco130I	CCWWGG	1 cut(s)	1432
Eco24I	GRGCYC	2 cut(s)	1210, 2392
Eco31I	GGTCTC	2 cut(s)	97, 2568
Eco32I	GATATC	1 cut(s)	2053
Eco47I	GGWCC	3 cut(s)	85, 2090, 2735
Eco47III	AGCGCT	1 cut(s)	1613
Eco52I	CGGCCG	2 cut(s)	202, 855
Eco53kI	GAGCTC	1 cut(s)	2390
Eco57I	CTGAAG	1 cut(s)	414
Eco81I	CCTNAGG	2 cut(s)	2364, 2787
Eco88I	CYCGRG	2 cut(s)	118, 2009
EcoICRI	GAGCTC	1 cut(s)	2390
EcoO109I	RGGNCCY	1 cut(s)	85
EcoRI	GAATTC	2 cut(s)	1212, 1276
EcoRII	CCWGG	8 cut(s)	77, 487, 604, 775, 2128, 2558, 2581, 2811
EcoRV	GATATC	1 cut(s)	2053
EcoT14I	CCWWGG	1 cut(s)	1432
EcoT22I	ATGCAT	1 cut(s)	1080
EcoT38I	GRGCYC	2 cut(s)	1210, 2392
ErhI	CCWWGG	1 cut(s)	1432
Esp3I	CGTCTC	1 cut(s)	121
FalI	AAGNNNNNCTT	4 cut(s)	1321, 1353, 2236, 2268
FaqI	GGGAC	3 cut(s)	445, 1794, 2076
FauI	CCCGC	4 cut(s)	19, 51, 1120, 1197
FauNDI	CATATG	2 cut(s)	1032, 2740
FbaI	TGATCA	2 cut(s)	259, 2019
FblI	GTMKAC	2 cut(s)	57, 572
Fnu4HI	GCNGC	7 cut(s)	366, 378, 825, 855, 1983, 2163, 2747
FokI	GGATG	9 cut(s)	168, 180, 713, 995, 1746, 1982, 2197, 2536, 2599
FriOI	GRGCYC	2 cut(s)	1210, 2392
Fsp4HI	GCNGC	7 cut(s)	366, 378, 825, 855, 1983, 2163, 2747
FspBI	CTAG	3 cut(s)	1502, 2202, 2379
GlaI	GCGC	6 cut(s)	281, 1187, 1613, 2577, 2644, 2655
GluI	GCNGC	7 cut(s)	366, 378, 825, 855, 1983, 2163, 2747
GsaI	CCCAGC	2 cut(s)	1414, 2304
GsuI	CTGGAG	4 cut(s)	471, 852, 1341, 2151
HaeII	RGCGCY	4 cut(s)	1189, 1615, 2646, 2657
HaeIII	GGCC	6 cut(s)	124, 204, 857, 2119, 2305, 2383
HapII	CCGG	2 cut(s)	1352, 2724
HgaI	GACGC	2 cut(s)	1758, 2106
HhaI	GCGC	6 cut(s)	282, 1188, 1614, 2578, 2645, 2656
Hin1I	GRCGYC	3 cut(s)	6, 114, 1769
Hin6I	GCGC	6 cut(s)	280, 1186, 1612, 2576, 2643, 2654
HinP1I	GCGC	6 cut(s)	280, 1186, 1612, 2576, 2643, 2654
HincII	GTYRAC	3 cut(s)	58, 782, 2284
HindII	GTYRAC	3 cut(s)	58, 782, 2284
HindIII	AAGCTT	2 cut(s)	290, 1682
HinfI	GANTC	4 cut(s)	337, 470, 1869, 2681
HpaII	CCGG	2 cut(s)	1352, 2724
HphI	GGTGA	5 cut(s)	775, 1142, 1267, 2426, 2764
Hpy166II	GTNNAC	9 cut(s)	58, 573, 742, 782, 806, 874, 1237, 1378, 2284
Hpy188I	TCNGA	9 cut(s)	362, 592, 667, 1052, 1489, 1585, 1674, 1774, 1885
Hpy8I	GTNNAC	9 cut(s)	58, 573, 742, 782, 806, 874, 1237, 1378, 2284
Hpy99I	CGWCG	7 cut(s)	59, 62, 116, 203, 357, 1774, 2100
HpyAV	CCTTC	3 cut(s)	1394, 1764, 1923
HpyCH4III	ACNGT	5 cut(s)	560, 1249, 2149, 2451, 2502
HpyCH4IV	ACGT	7 cut(s)	60, 114, 231, 355, 600, 1905, 2779
HpyF10VI	GCNNNNNNNGC	8 cut(s)	326, 374, 383, 1416, 1481, 1738, 2629, 2651
HpyF3I	CTNAG	9 cut(s)	381, 514, 1671, 1850, 1884, 1973, 2195, 2364, 2787
HpySE526I	ACGT	7 cut(s)	60, 114, 231, 355, 600, 1905, 2779
Hsp92I	GRCGYC	3 cut(s)	6, 114, 1769
HspAI	GCGC	6 cut(s)	280, 1186, 1612, 2576, 2643, 2654
KpnI	GGTACC	1 cut(s)	43
Ksp22I	TGATCA	2 cut(s)	259, 2019
LguI	GCTCTTC	3 cut(s)	1338, 1524, 2652
LmnI	GCTCC	4 cut(s)	1360, 1480, 2132, 2395
Lsp1109I	GCAGC	5 cut(s)	352, 836, 1994, 2174, 2758
LweI	GCATC	9 cut(s)	364, 583, 691, 1065, 1114, 1719, 2379, 2577, 2722
MabI	ACCWGGT	1 cut(s)	2558
MaeI	CTAG	3 cut(s)	1502, 2202, 2379
MaeII	ACGT	7 cut(s)	60, 114, 231, 355, 600, 1905, 2779
MaeIII	GTNAC	2 cut(s)	1963, 2414
MbiI	CCGCTC	1 cut(s)	46
MfeI	CAATTG	2 cut(s)	306, 2136
MflI	RGATCY	2 cut(s)	706, 1498
MhlI	GDGCHC	5 cut(s)	513, 621, 1210, 1519, 2392
MmeI	TCCRAC	1 cut(s)	1752
Mph1103I	ATGCAT	1 cut(s)	1080
MroXI	GAANNNNTTC	1 cut(s)	1868
MseI	TTAA	9 cut(s)	542, 755, 963, 1065, 1697, 1958, 2243, 2358, 2534
MslI	CAYNNNNRTG	3 cut(s)	275, 905, 1450
MspA1I	CMGCKG	3 cut(s)	24, 827, 2300
MspI	CCGG	2 cut(s)	1352, 2724
MspR9I	CCNGG	8 cut(s)	79, 489, 606, 777, 2130, 2560, 2583, 2813
MunI	CAATTG	2 cut(s)	306, 2136
MvaI	CCWGG	8 cut(s)	79, 489, 606, 777, 2130, 2560, 2583, 2813
MvnI	CGCG	1 cut(s)	14
MwoI	GCNNNNNNNGC	8 cut(s)	326, 374, 383, 1416, 1481, 1738, 2629, 2651
NdeI	CATATG	2 cut(s)	1032, 2740
NlaIV	GGNNCC	4 cut(s)	41, 87, 1356, 2092
NmeAIII	GCCGAG	2 cut(s)	126, 658
NmuCI	GTSAC	1 cut(s)	2414
NsiI	ATGCAT	1 cut(s)	1080
NspI	RCATGY	1 cut(s)	1835
OliI	CACNNNNGTG	1 cut(s)	275
PaeR7I	CTCGAG	1 cut(s)	118
PaqCI	CACCTGC	1 cut(s)	2740
PasI	CCCWGGG	1 cut(s)	78
PciSI	GCTCTTC	3 cut(s)	1338, 1524, 2652
PcsI	WCGNNNNNNNCGW	2 cut(s)	352, 606
PdmI	GAANNNNTTC	1 cut(s)	1868
PfeI	GAWTC	4 cut(s)	337, 470, 1869, 2681
PflMI	CCANNNNNTGG	2 cut(s)	2216, 2345
PkrI	GCNGC	7 cut(s)	367, 379, 826, 856, 1984, 2164, 2748
Ple19I	CGATCG	1 cut(s)	54
PpuMI	RGGWCCY	1 cut(s)	85
PshAI	GACNNNNGTC	1 cut(s)	2088
Psp124BI	GAGCTC	1 cut(s)	2392
Psp1406I	AACGTT	1 cut(s)	600
Psp5II	RGGWCCY	1 cut(s)	85
Psp6I	CCWGG	8 cut(s)	77, 487, 604, 775, 2128, 2558, 2581, 2811
PspFI	CCCAGC	2 cut(s)	1410, 2300
PspGI	CCWGG	8 cut(s)	77, 487, 604, 775, 2128, 2558, 2581, 2811
PspN4I	GGNNCC	4 cut(s)	41, 87, 1356, 2092
PspPI	GGNCC	5 cut(s)	85, 2090, 2303, 2382, 2735
PspPPI	RGGWCCY	1 cut(s)	85
PstI	CTGCAG	1 cut(s)	1984
PsuI	RGATCY	2 cut(s)	706, 1498
PvuI	CGATCG	1 cut(s)	54
PvuII	CAGCTG	2 cut(s)	827, 2300
RsaI	GTAC	2 cut(s)	41, 2504
RsaNI	GTAC	2 cut(s)	40, 2503
RseI	CAYNNNNRTG	3 cut(s)	275, 905, 1450
SacI	GAGCTC	1 cut(s)	2392
SalI	GTCGAC	1 cut(s)	56
SapI	GCTCTTC	3 cut(s)	1338, 1524, 2652
SaqAI	TTAA	9 cut(s)	542, 755, 963, 1065, 1697, 1958, 2243, 2358, 2534
SatI	GCNGC	7 cut(s)	366, 378, 825, 855, 1983, 2163, 2747
Sau96I	GGNCC	5 cut(s)	85, 2090, 2303, 2382, 2735
ScrFI	CCNGG	8 cut(s)	79, 489, 606, 777, 2130, 2560, 2583, 2813
SduI	GDGCHC	5 cut(s)	513, 621, 1210, 1519, 2392
SexAI	ACCWGGT	1 cut(s)	2558
SfaNI	GCATC	9 cut(s)	364, 583, 691, 1065, 1114, 1719, 2379, 2577, 2722
SfcI	CTRYAG	2 cut(s)	1980, 2568
Sfr274I	CTCGAG	1 cut(s)	118
SgrDI	CGTCGACG	1 cut(s)	56
SinI	GGWCC	3 cut(s)	85, 2090, 2735
SlaI	CTCGAG	1 cut(s)	118
SmiMI	CAYNNNNRTG	3 cut(s)	275, 905, 1450
SmlI	CTYRAG	1 cut(s)	118
SmoI	CTYRAG	1 cut(s)	118
SspI	AATATT	4 cut(s)	246, 530, 753, 920
SspMI	CTAG	3 cut(s)	1502, 2202, 2379
SstI	GAGCTC	1 cut(s)	2392
StyD4I	CCNGG	8 cut(s)	77, 487, 604, 775, 2128, 2558, 2581, 2811
StyI	CCWWGG	1 cut(s)	1432
TaaI	ACNGT	5 cut(s)	560, 1249, 2149, 2451, 2502
TaiI	ACGT	7 cut(s)	63, 117, 234, 358, 603, 1908, 2782
TauI	GCSGC	2 cut(s)	380, 857
TfiI	GAWTC	4 cut(s)	337, 470, 1869, 2681
Tru1I	TTAA	9 cut(s)	542, 755, 963, 1065, 1697, 1958, 2243, 2358, 2534
Tru9I	TTAA	9 cut(s)	542, 755, 963, 1065, 1697, 1958, 2243, 2358, 2534
TscAI	CASTG	2 cut(s)	1126, 1365
TseFI	GTSAC	1 cut(s)	2414
TseI	GCWGC	5 cut(s)	365, 824, 1982, 2162, 2746
Tsp45I	GTSAC	1 cut(s)	2414
TspGWI	ACGGA	4 cut(s)	1542, 1715, 2063, 2318
TspRI	CASTG	2 cut(s)	1126, 1365
Van91I	CCANNNNNTGG	2 cut(s)	2216, 2345
VpaK11BI	GGWCC	3 cut(s)	85, 2090, 2735
XapI	RAATTY	8 cut(s)	416, 1094, 1191, 1212, 1276, 1537, 2350, 2593
XbaI	TCTAGA	1 cut(s)	1501
XceI	RCATGY	1 cut(s)	1835
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2664
XhoI	CTCGAG	1 cut(s)	118
XmiI	GTMKAC	2 cut(s)	57, 572
XmnI	GAANNNNTTC	1 cut(s)	1868
XspI	CTAG	3 cut(s)	1502, 2202, 2379
ZraI	GACGTC	1 cut(s)	115
Zsp2I	ATGCAT	1 cut(s)	1080

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.