Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0037132.1

Orthogroup ID

OG0007016

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1850

Gene Structure 1850 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0037132.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1014 bp

agtcccccacatgaaagatttttatatacgataaatactagtcatagtggtggaatgaatggattcctttggttatctgagaggaatggcattagaaacgtaatcccttcccctgtgcatggttttcccaacatagactgtaacgaagtcttaaatgttacatatgttggccctgcagctcaaaaacacagcccagaacctcccgagggtgtgatcatgcccagaaaggttgtaaaacctacggatatcaaacctccccctgcgttatggcatgaagacaatggtccccgacgctaccaaaacagagataggccacaaatacctggagcaattgctggaaatgtgttgggagaagcagctcatcgccttgtcaagaacacactaaatcttagacctagtaatccatcctctggattttgggatcaatcacagcctttaagagcttcttctggaaactacaatggaaactatccagtcaacagaccaagaccagctgggccatctgggtatgaaaggggtttccgtgaagaaccaaattatggaaattcctttaatcctcagggcatcatggctaggcccagagctccttactcaaatggtgtgcagggtgacagacagagttttaggacacaagaaagaacacagtatcaagagcagagttttagaggacaagaaagaatacaatatcaagaacagtaccgcaacatgagaactgggatgtctagtttaacaatggaaggaagtgtgagaaccaggtctcctgtagtggcgcaaccagggatgccaaattcaggatactccacaaacccacatcagcagtttgtgcagaacatgggcgctcttccaccgccacctacaaagtggatcaacaaagaatttggtgccaatggtgggatttatggtaggcatcaggaaaccggatatggcggaccatatgaacagcaggtgaaaaaggtttatcaggtaaagacacgtcctcctcaggacttgtcaaactctggaaaccaggagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000291 GO:0000902 GO:0000932 GO:0000956 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003824 GO:0004518 GO:0004527 GO:0004532 GO:0004534 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005844 GO:0006139 GO:0006401 GO:0006402 GO:0006725 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0008409 GO:0009056 GO:0009057 GO:0009266 GO:0009408 GO:0009628 GO:0009653 GO:0009826 GO:0009888 GO:0009892 GO:0009987 GO:0010087 GO:0010286 GO:0010468 GO:0010494 GO:0010586 GO:0010587 GO:0010605 GO:0010629 GO:0016043 GO:0016049 GO:0016070 GO:0016071 GO:0016787 GO:0016788 GO:0016796 GO:0016896 GO:0019222 GO:0019439 GO:0031086 GO:0031087 GO:0032502 GO:0032989 GO:0032991 GO:0033554 GO:0034605 GO:0034641 GO:0034655 GO:0034660 GO:0034661 GO:0035770 GO:0036464 GO:0040007 GO:0040029 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046700 GO:0048519 GO:0048589 GO:0048856 GO:0048869 GO:0050789 GO:0050896 GO:0051301 GO:0051716 GO:0060255 GO:0060560 GO:0065007 GO:0070370 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0090501 GO:0090503 GO:0097159 GO:0140098 GO:1901360 GO:1901361 GO:1901363 GO:1901575 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03008 ko03018 ko04016 map03008 map03018 map04016

Pfam Domains

Protein Families

XRN_N zf-CCHC

Protein Analysis

337

Amino Acids

37.73

Weight (kDa)

9.79

Isoelectric Point (pI)

50.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007016)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G54490 AT1G54490
fragaria_vesca	FvH4_6g03690 FvH4_6g03690
malus_domestica	MD04G1219200.v1.1 MD12G1236200.v1.1
prunus_persica	Prupe.6G338500_v2.0.a1 Prupe.6G338500_v2.0.a1
pyrus_communis	pycom04g19450 pycom12g21730
rosa_chinensis	RchiOBHm_Chr3g0452231
rosa_laevigata	RLG00000025615
rosa_multiflora	Rmu_sc0037132.1_g000001 Rmu_sc0041263.1_g000001
rosa_roxburghii	Rroxscaffold_164G00435930 Rroxscaffold_6G00429350
rosa_rugosa	Rorug02G0639400
rosa_samantha	Rh3AG041300 Rh3BG043000 Rh3BG043200 Rh3CG041400 Rh3CG041600 Rh3DG042300 Rh3DG042500
rosa_wichuraiana	Rw3G003160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	934
Acc36I	ACCTGC	1 cut(s)	934
AccB1I	GGYRCC	1 cut(s)	881
AccB7I	CCANNNNNTGG	2 cut(s)	410, 539
AciI	CCGC	3 cut(s)	700, 848, 927
AclWI	GGATC	2 cut(s)	429, 872
AcsI	RAATTY	3 cut(s)	544, 787, 875
AfaI	GTAC	1 cut(s)	698
AfiI	CCNNNNNNNGG	6 cut(s)	119, 206, 410, 539, 791, 891
AflIII	ACRYGT	1 cut(s)	971
AhlI	ACTAGT	1 cut(s)	38
AjiI	CACGTC	1 cut(s)	974
AjnI	CCWGG	4 cut(s)	322, 752, 775, 1005
AloI	GAACNNNNNNTCC	2 cut(s)	742, 774
AluBI	AGCT	5 cut(s)	179, 359, 443, 494, 584
AluI	AGCT	5 cut(s)	179, 359, 443, 494, 584
Alw21I	GWGCWC	1 cut(s)	586
Alw26I	GTCTC	1 cut(s)	762
AlwI	GGATC	2 cut(s)	429, 872
Ama87I	CYCGRG	1 cut(s)	203
AoxI	GGCC	4 cut(s)	169, 311, 497, 575
ApeKI	GCWGC	2 cut(s)	176, 356
ApoI	RAATTY	3 cut(s)	544, 787, 875
Asp700I	GAANNNNTTC	1 cut(s)	62
AspLEI	GCGC	2 cut(s)	772, 839
AspS9I	GGNCC	5 cut(s)	170, 284, 497, 576, 929
AsuHPI	GGTGA	2 cut(s)	620, 958
AvaI	CYCGRG	1 cut(s)	203
AvaII	GGWCC	2 cut(s)	284, 929
AxyI	CCTNAGG	2 cut(s)	558, 981
BanI	GGYRCC	1 cut(s)	881
BanII	GRGCYC	1 cut(s)	586
BbsI	GAAGAC	1 cut(s)	282
Bbv12I	GWGCWC	1 cut(s)	586
BbvI	GCAGC	2 cut(s)	188, 368
BccI	CCATC	2 cut(s)	412, 508
BciT130I	CCWGG	4 cut(s)	324, 754, 777, 1007
BciVI	GTATCC	1 cut(s)	788
BclI	TGATCA	1 cut(s)	213
BcoDI	GTCTC	1 cut(s)	762
BcuI	ACTAGT	1 cut(s)	38
BfaI	CTAG	4 cut(s)	39, 396, 573, 723
BfmI	CTRYAG	2 cut(s)	174, 762
BfoI	RGCGCY	1 cut(s)	840
BfuAI	ACCTGC	1 cut(s)	934
BfuI	GTATCC	1 cut(s)	788
BisI	GCNGC	2 cut(s)	177, 357
BlsI	GCNGC	2 cut(s)	178, 358
Bme1390I	CCNGG	4 cut(s)	324, 754, 777, 1007
Bme18I	GGWCC	2 cut(s)	284, 929
BmeT110I	CYCGRG	1 cut(s)	203
BmgBI	CACGTC	1 cut(s)	974
BmgT120I	GGNCC	5 cut(s)	170, 284, 497, 576, 929
BmiI	GGNNCC	2 cut(s)	286, 883
BmrFI	CCNGG	4 cut(s)	324, 754, 777, 1007
BmrI	ACTGGG	1 cut(s)	723
BmsI	GCATC	3 cut(s)	573, 771, 916
BmuI	ACTGGG	1 cut(s)	723
BoxI	GACNNNNGTC	1 cut(s)	282
BpiI	GAAGAC	1 cut(s)	282
BpmI	CTGGAG	1 cut(s)	345
BsaI	GGTCTC	1 cut(s)	762
BsaJI	CCNNGG	2 cut(s)	204, 776
BsaWI	WCCGGW	1 cut(s)	917
BsaXI	ACNNNNNCTCC	4 cut(s)	742, 772, 961, 991
Bsc4I	CCNNNNNNNGG	6 cut(s)	119, 206, 410, 539, 791, 891
Bse1I	ACTGG	2 cut(s)	473, 718
Bse21I	CCTNAGG	2 cut(s)	558, 981
BseBI	CCWGG	4 cut(s)	324, 754, 777, 1007
BseDI	CCNNGG	2 cut(s)	204, 776
BseGI	GGATG	3 cut(s)	404, 723, 786
BseLI	CCNNNNNNNGG	6 cut(s)	119, 206, 410, 539, 791, 891
BseMII	CTCAG	3 cut(s)	69, 572, 995
BseNI	ACTGG	2 cut(s)	473, 718
BseRI	GAGGAG	1 cut(s)	969
BseXI	GCAGC	2 cut(s)	188, 368
BseYI	CCCAGC	1 cut(s)	494
BsgI	GTGCAG	2 cut(s)	623, 845
BshFI	GGCC	4 cut(s)	171, 313, 499, 577
BshNI	GGYRCC	1 cut(s)	881
BsiHKAI	GWGCWC	1 cut(s)	586
BsiHKCI	CYCGRG	1 cut(s)	203
BsiSI	CCGG	1 cut(s)	918
BslFI	GGGAC	1 cut(s)	270
BslI	CCNNNNNNNGG	6 cut(s)	119, 206, 410, 539, 791, 891
BsmAI	GTCTC	1 cut(s)	762
BsmFI	GGGAC	1 cut(s)	270
BsnI	GGCC	4 cut(s)	171, 313, 499, 577
Bso31I	GGTCTC	1 cut(s)	762
BsoBI	CYCGRG	1 cut(s)	203
Bsp1286I	GDGCHC	1 cut(s)	586
Bsp143I	GATC	3 cut(s)	213, 421, 864
BspACI	CCGC	3 cut(s)	700, 848, 927
BspANI	GGCC	4 cut(s)	171, 313, 499, 577
BspCNI	CTCAG	3 cut(s)	70, 571, 994
BspLI	GGNNCC	2 cut(s)	286, 883
BspMAI	CTGCAG	1 cut(s)	178
BspMI	ACCTGC	1 cut(s)	934
BspPI	GGATC	2 cut(s)	429, 872
BspQI	GCTCTTC	1 cut(s)	846
BspT107I	GGYRCC	1 cut(s)	881
BspTNI	GGTCTC	1 cut(s)	762
BsrI	ACTGG	2 cut(s)	473, 718
BssECI	CCNNGG	2 cut(s)	204, 776
BssMI	GATC	3 cut(s)	213, 421, 864
Bst2UI	CCWGG	4 cut(s)	324, 754, 777, 1007
Bst4CI	ACNGT	3 cut(s)	140, 645, 696
Bst6I	CTCTTC	1 cut(s)	846
BstAPI	GCANNNNNTGC	1 cut(s)	823
BstDEI	CTNAG	4 cut(s)	78, 389, 558, 981
BstF5I	GGATG	3 cut(s)	404, 723, 786
BstH2I	RGCGCY	1 cut(s)	840
BstHHI	GCGC	2 cut(s)	772, 839
BstKTI	GATC	3 cut(s)	216, 424, 867
BstMAI	GTCTC	1 cut(s)	762
BstMBI	GATC	3 cut(s)	213, 421, 864
BstMWI	GCNNNNNNNGC	1 cut(s)	823
BstNI	CCWGG	4 cut(s)	324, 754, 777, 1007
BstPAI	GACNNNNGTC	1 cut(s)	282
BstSCI	CCNGG	4 cut(s)	322, 752, 775, 1005
BstSFI	CTRYAG	2 cut(s)	174, 762
BstV1I	GCAGC	2 cut(s)	188, 368
BstV2I	GAAGAC	1 cut(s)	282
Bsu36I	CCTNAGG	2 cut(s)	558, 981
BsuI	GTATCC	1 cut(s)	788
BsuRI	GGCC	4 cut(s)	171, 313, 499, 577
BtgZI	GCGATG	1 cut(s)	347
BtrI	CACGTC	1 cut(s)	974
BtsCI	GGATG	3 cut(s)	404, 723, 786
BveI	ACCTGC	1 cut(s)	934
CfoI	GCGC	2 cut(s)	772, 839
Cfr13I	GGNCC	5 cut(s)	170, 284, 497, 576, 929
CseI	GACGC	1 cut(s)	300
CsiI	ACCWGGT	1 cut(s)	752
Csp6I	GTAC	1 cut(s)	697
CviAII	CATG	7 cut(s)	11, 119, 217, 272, 568, 706, 832
CviQI	GTAC	1 cut(s)	697
DdeI	CTNAG	4 cut(s)	78, 389, 558, 981
DpnI	GATC	3 cut(s)	215, 423, 866
DpnII	GATC	3 cut(s)	213, 421, 864
Eam1104I	CTCTTC	1 cut(s)	846
EarI	CTCTTC	1 cut(s)	846
EciI	GGCGGA	1 cut(s)	942
Ecl136II	GAGCTC	1 cut(s)	584
Eco24I	GRGCYC	1 cut(s)	586
Eco31I	GGTCTC	1 cut(s)	762
Eco32I	GATATC	1 cut(s)	247
Eco47I	GGWCC	2 cut(s)	284, 929
Eco53kI	GAGCTC	1 cut(s)	584
Eco81I	CCTNAGG	2 cut(s)	558, 981
Eco88I	CYCGRG	1 cut(s)	203
EcoICRI	GAGCTC	1 cut(s)	584
EcoRII	CCWGG	4 cut(s)	322, 752, 775, 1005
EcoRV	GATATC	1 cut(s)	247
EcoT38I	GRGCYC	1 cut(s)	586
FaeI	CATG	7 cut(s)	14, 122, 220, 275, 571, 709, 835
FalI	AAGNNNNNCTT	2 cut(s)	430, 462
FaqI	GGGAC	1 cut(s)	270
FatI	CATG	7 cut(s)	10, 118, 216, 271, 567, 705, 831
FauNDI	CATATG	2 cut(s)	163, 934
FbaI	TGATCA	1 cut(s)	213
Fnu4HI	GCNGC	2 cut(s)	177, 357
FokI	GGATG	3 cut(s)	391, 730, 793
FriOI	GRGCYC	1 cut(s)	586
Fsp4HI	GCNGC	2 cut(s)	177, 357
FspBI	CTAG	4 cut(s)	39, 396, 573, 723
GlaI	GCGC	2 cut(s)	771, 838
GluI	GCNGC	2 cut(s)	177, 357
GsaI	CCCAGC	1 cut(s)	498
GsuI	CTGGAG	1 cut(s)	345
HaeII	RGCGCY	1 cut(s)	840
HaeIII	GGCC	4 cut(s)	171, 313, 499, 577
HapII	CCGG	1 cut(s)	918
HgaI	GACGC	1 cut(s)	300
HhaI	GCGC	2 cut(s)	772, 839
Hin1II	CATG	7 cut(s)	14, 122, 220, 275, 571, 709, 835
Hin6I	GCGC	2 cut(s)	770, 837
HinP1I	GCGC	2 cut(s)	770, 837
HincII	GTYRAC	1 cut(s)	478
HindII	GTYRAC	1 cut(s)	478
HinfI	GANTC	1 cut(s)	63
HpaII	CCGG	1 cut(s)	918
HphI	GGTGA	2 cut(s)	620, 958
Hpy166II	GTNNAC	1 cut(s)	478
Hpy188I	TCNGA	1 cut(s)	79
Hpy8I	GTNNAC	1 cut(s)	478
Hpy99I	CGWCG	1 cut(s)	294
HpyAV	CCTTC	2 cut(s)	117, 731
HpyCH4III	ACNGT	3 cut(s)	140, 645, 696
HpyCH4IV	ACGT	2 cut(s)	99, 973
HpyCH4V	TGCA	4 cut(s)	118, 176, 604, 826
HpyF10VI	GCNNNNNNNGC	1 cut(s)	823
HpyF3I	CTNAG	4 cut(s)	78, 389, 558, 981
HpySE526I	ACGT	2 cut(s)	99, 973
Hsp92II	CATG	7 cut(s)	14, 122, 220, 275, 571, 709, 835
HspAI	GCGC	2 cut(s)	770, 837
Ksp22I	TGATCA	1 cut(s)	213
Kzo9I	GATC	3 cut(s)	213, 421, 864
LguI	GCTCTTC	1 cut(s)	846
LmnI	GCTCC	2 cut(s)	326, 589
Lsp1109I	GCAGC	2 cut(s)	188, 368
LweI	GCATC	3 cut(s)	573, 771, 916
MabI	ACCWGGT	1 cut(s)	752
MaeI	CTAG	4 cut(s)	39, 396, 573, 723
MaeII	ACGT	2 cut(s)	99, 973
MaeIII	GTNAC	3 cut(s)	140, 157, 608
MalI	GATC	3 cut(s)	215, 423, 866
MboI	GATC	3 cut(s)	213, 421, 864
MboII	GAAGA	4 cut(s)	287, 438, 539, 833
MfeI	CAATTG	1 cut(s)	330
MhlI	GDGCHC	1 cut(s)	586
MluCI	AATT	5 cut(s)	330, 535, 544, 787, 875
MnlI	CCTC	9 cut(s)	75, 199, 210, 264, 418, 567, 659, 987, 990
MroXI	GAANNNNTTC	1 cut(s)	62
MseI	TTAA	4 cut(s)	152, 437, 552, 728
MslI	CAYNNNNRTG	1 cut(s)	48
MspA1I	CMGCKG	1 cut(s)	494
MspI	CCGG	1 cut(s)	918
MspR9I	CCNGG	4 cut(s)	324, 754, 777, 1007
MunI	CAATTG	1 cut(s)	330
MvaI	CCWGG	4 cut(s)	324, 754, 777, 1007
MwoI	GCNNNNNNNGC	1 cut(s)	823
NdeI	CATATG	2 cut(s)	163, 934
NdeII	GATC	3 cut(s)	213, 421, 864
NlaIII	CATG	7 cut(s)	14, 122, 220, 275, 571, 709, 835
NlaIV	GGNNCC	2 cut(s)	286, 883
NmuCI	GTSAC	1 cut(s)	608
PaqCI	CACCTGC	1 cut(s)	934
PciSI	GCTCTTC	1 cut(s)	846
PdmI	GAANNNNTTC	1 cut(s)	62
PfeI	GAWTC	1 cut(s)	63
PflMI	CCANNNNNTGG	2 cut(s)	410, 539
PkrI	GCNGC	2 cut(s)	178, 358
PshAI	GACNNNNGTC	1 cut(s)	282
Psp124BI	GAGCTC	1 cut(s)	586
Psp6I	CCWGG	4 cut(s)	322, 752, 775, 1005
PspFI	CCCAGC	1 cut(s)	494
PspGI	CCWGG	4 cut(s)	322, 752, 775, 1005
PspN4I	GGNNCC	2 cut(s)	286, 883
PspPI	GGNCC	5 cut(s)	170, 284, 497, 576, 929
PstI	CTGCAG	1 cut(s)	178
PvuII	CAGCTG	1 cut(s)	494
RsaI	GTAC	1 cut(s)	698
RsaNI	GTAC	1 cut(s)	697
RseI	CAYNNNNRTG	1 cut(s)	48
SacI	GAGCTC	1 cut(s)	586
SapI	GCTCTTC	1 cut(s)	846
SaqAI	TTAA	4 cut(s)	152, 437, 552, 728
SatI	GCNGC	2 cut(s)	177, 357
Sau3AI	GATC	3 cut(s)	213, 421, 864
Sau96I	GGNCC	5 cut(s)	170, 284, 497, 576, 929
ScrFI	CCNGG	4 cut(s)	324, 754, 777, 1007
SduI	GDGCHC	1 cut(s)	586
SexAI	ACCWGGT	1 cut(s)	752
SfaNI	GCATC	3 cut(s)	573, 771, 916
SfcI	CTRYAG	2 cut(s)	174, 762
SinI	GGWCC	2 cut(s)	284, 929
SmiMI	CAYNNNNRTG	1 cut(s)	48
SpeI	ACTAGT	1 cut(s)	38
Sse9I	AATT	5 cut(s)	330, 535, 544, 787, 875
SsiI	CCGC	3 cut(s)	700, 848, 927
SspMI	CTAG	4 cut(s)	39, 396, 573, 723
SstI	GAGCTC	1 cut(s)	586
StyD4I	CCNGG	4 cut(s)	322, 752, 775, 1005
TaaI	ACNGT	3 cut(s)	140, 645, 696
TaiI	ACGT	2 cut(s)	102, 976
TasI	AATT	5 cut(s)	330, 535, 544, 787, 875
TfiI	GAWTC	1 cut(s)	63
Tru1I	TTAA	4 cut(s)	152, 437, 552, 728
Tru9I	TTAA	4 cut(s)	152, 437, 552, 728
TseFI	GTSAC	1 cut(s)	608
TseI	GCWGC	2 cut(s)	176, 356
Tsp45I	GTSAC	1 cut(s)	608
TspDTI	ATGAA	5 cut(s)	27, 71, 288, 525, 951
TspGWI	ACGGA	2 cut(s)	257, 512
Van91I	CCANNNNNTGG	2 cut(s)	410, 539
VpaK11BI	GGWCC	2 cut(s)	284, 929
XapI	RAATTY	3 cut(s)	544, 787, 875
XcmI	CCANNNNNNNNNTGG	1 cut(s)	858
XmnI	GAANNNNTTC	1 cut(s)	62
XspI	CTAG	4 cut(s)	39, 396, 573, 723

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.