5'-3' exoribonuclease
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G54490 AT1G54490 |
| fragaria_vesca | FvH4_6g03690 FvH4_6g03690 |
| malus_domestica | MD04G1219200.v1.1 MD12G1236200.v1.1 |
| prunus_persica | Prupe.6G338500_v2.0.a1 Prupe.6G338500_v2.0.a1 |
| pyrus_communis | pycom04g19450 pycom12g21730 |
| rosa_chinensis | RchiOBHm_Chr3g0452231 |
| rosa_laevigata | RLG00000025615 |
| rosa_multiflora | Rmu_sc0037132.1_g000001 Rmu_sc0041263.1_g000001 |
| rosa_roxburghii | Rroxscaffold_164G00435930 Rroxscaffold_6G00429350 |
| rosa_rugosa | Rorug02G0639400 |
| rosa_samantha | Rh3AG041300 Rh3BG043000 Rh3BG043200 Rh3CG041400 Rh3CG041600 Rh3DG042300 Rh3DG042500 |
| rosa_wichuraiana | Rw3G003160 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 1 cut(s) | 148 |
| AclWI | GGATC | 1 cut(s) | 458 |
| AcsI | RAATTY | 4 cut(s) | 135, 156, 451, 525 |
| AfaI | GTAC | 1 cut(s) | 36 |
| AgsI | TTSAA | 5 cut(s) | 64, 143, 308, 332, 368 |
| AluBI | AGCT | 1 cut(s) | 220 |
| AluI | AGCT | 1 cut(s) | 220 |
| Alw21I | GWGCWC | 1 cut(s) | 433 |
| Alw26I | GTCTC | 1 cut(s) | 181 |
| AlwI | GGATC | 1 cut(s) | 458 |
| ApoI | RAATTY | 4 cut(s) | 135, 156, 451, 525 |
| AspLEI | GCGC | 1 cut(s) | 132 |
| AsuC2I | CCSGG | 1 cut(s) | 273 |
| BanII | GRGCYC | 1 cut(s) | 154 |
| Bbv12I | GWGCWC | 1 cut(s) | 433 |
| BccI | CCATC | 2 cut(s) | 475, 502 |
| BcnI | CCSGG | 1 cut(s) | 273 |
| BcoDI | GTCTC | 1 cut(s) | 181 |
| BfoI | RGCGCY | 1 cut(s) | 133 |
| Bme1390I | CCNGG | 1 cut(s) | 273 |
| BmiI | GGNNCC | 2 cut(s) | 228, 270 |
| BmrFI | CCNGG | 1 cut(s) | 273 |
| BmsI | GCATC | 1 cut(s) | 46 |
| BpmI | CTGGAG | 1 cut(s) | 213 |
| BpuMI | CCSGG | 1 cut(s) | 273 |
| BsaJI | CCNNGG | 1 cut(s) | 400 |
| Bse118I | RCCGGY | 1 cut(s) | 223 |
| Bse1I | ACTGG | 2 cut(s) | 109, 230 |
| Bse3DI | GCAATG | 1 cut(s) | 425 |
| BseDI | CCNNGG | 1 cut(s) | 400 |
| BseMI | GCAATG | 1 cut(s) | 425 |
| BseMII | CTCAG | 1 cut(s) | 288 |
| BseNI | ACTGG | 2 cut(s) | 109, 230 |
| BseRI | GAGGAG | 1 cut(s) | 338 |
| BsiHKAI | GWGCWC | 1 cut(s) | 433 |
| BsiSI | CCGG | 2 cut(s) | 224, 272 |
| BslFI | GGGAC | 1 cut(s) | 23 |
| BsmAI | GTCTC | 1 cut(s) | 181 |
| BsmFI | GGGAC | 1 cut(s) | 23 |
| BsmI | GAATGC | 1 cut(s) | 59 |
| Bsp1286I | GDGCHC | 2 cut(s) | 154, 433 |
| Bsp1407I | TGTACA | 1 cut(s) | 34 |
| Bsp143I | GATC | 1 cut(s) | 463 |
| BspACI | CCGC | 1 cut(s) | 148 |
| BspCNI | CTCAG | 1 cut(s) | 289 |
| BspLI | GGNNCC | 2 cut(s) | 228, 270 |
| BspPI | GGATC | 1 cut(s) | 458 |
| BspQI | GCTCTTC | 2 cut(s) | 210, 438 |
| BsrDI | GCAATG | 1 cut(s) | 425 |
| BsrFI | RCCGGY | 1 cut(s) | 223 |
| BsrGI | TGTACA | 1 cut(s) | 34 |
| BsrI | ACTGG | 2 cut(s) | 109, 230 |
| BssAI | RCCGGY | 1 cut(s) | 223 |
| BssECI | CCNNGG | 1 cut(s) | 400 |
| BssMI | GATC | 1 cut(s) | 463 |
| BssT1I | CCWWGG | 1 cut(s) | 400 |
| Bst4CI | ACNGT | 1 cut(s) | 39 |
| Bst6I | CTCTTC | 4 cut(s) | 177, 196, 210, 438 |
| BstAUI | TGTACA | 1 cut(s) | 34 |
| BstC8I | GCNNGC | 2 cut(s) | 150, 165 |
| BstDEI | CTNAG | 1 cut(s) | 297 |
| BstH2I | RGCGCY | 1 cut(s) | 133 |
| BstHHI | GCGC | 1 cut(s) | 132 |
| BstKTI | GATC | 1 cut(s) | 466 |
| BstMAI | GTCTC | 1 cut(s) | 181 |
| BstMBI | GATC | 1 cut(s) | 463 |
| BstSCI | CCNGG | 1 cut(s) | 271 |
| BtsIMutI | CAGTG | 1 cut(s) | 237 |
| Cac8I | GCNNGC | 2 cut(s) | 150, 165 |
| CfoI | GCGC | 1 cut(s) | 132 |
| Cfr10I | RCCGGY | 1 cut(s) | 223 |
| Csp6I | GTAC | 1 cut(s) | 35 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 63, 98 |
| CviAII | CATG | 1 cut(s) | 414 |
| CviJI | RGCY | 8 cut(s) | 152, 167, 209, 220, 227, 271, 319, 372 |
| CviKI_1 | RGCY | 8 cut(s) | 152, 167, 209, 220, 227, 271, 319, 372 |
| CviQI | GTAC | 1 cut(s) | 35 |
| DdeI | CTNAG | 1 cut(s) | 297 |
| DpnI | GATC | 1 cut(s) | 465 |
| DpnII | GATC | 1 cut(s) | 463 |
| Eam1104I | CTCTTC | 4 cut(s) | 177, 196, 210, 438 |
| EarI | CTCTTC | 4 cut(s) | 177, 196, 210, 438 |
| Eco130I | CCWWGG | 1 cut(s) | 400 |
| Eco24I | GRGCYC | 1 cut(s) | 154 |
| EcoRI | GAATTC | 1 cut(s) | 156 |
| EcoT14I | CCWWGG | 1 cut(s) | 400 |
| EcoT22I | ATGCAT | 1 cut(s) | 61 |
| EcoT38I | GRGCYC | 1 cut(s) | 154 |
| ErhI | CCWWGG | 1 cut(s) | 400 |
| FaeI | CATG | 1 cut(s) | 417 |
| FaiI | YATR | 8 cut(s) | 24, 45, 126, 279, 294, 363, 376, 415 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 193, 225 |
| FaqI | GGGAC | 1 cut(s) | 23 |
| FatI | CATG | 1 cut(s) | 413 |
| FauI | CCCGC | 1 cut(s) | 141 |
| FriOI | GRGCYC | 1 cut(s) | 154 |
| GlaI | GCGC | 1 cut(s) | 131 |
| GsuI | CTGGAG | 1 cut(s) | 213 |
| HaeII | RGCGCY | 1 cut(s) | 133 |
| HapII | CCGG | 2 cut(s) | 224, 272 |
| HhaI | GCGC | 1 cut(s) | 132 |
| Hin1II | CATG | 1 cut(s) | 417 |
| Hin6I | GCGC | 1 cut(s) | 130 |
| HinP1I | GCGC | 1 cut(s) | 130 |
| HinfI | GANTC | 1 cut(s) | 11 |
| HpaII | CCGG | 2 cut(s) | 224, 272 |
| Hpy166II | GTNNAC | 1 cut(s) | 250 |
| Hpy188III | TCNNGA | 1 cut(s) | 437 |
| Hpy8I | GTNNAC | 1 cut(s) | 250 |
| HpyAV | CCTTC | 1 cut(s) | 362 |
| HpyCH4III | ACNGT | 1 cut(s) | 39 |
| HpyCH4V | TGCA | 1 cut(s) | 59 |
| HpyF3I | CTNAG | 1 cut(s) | 297 |
| Hsp92II | CATG | 1 cut(s) | 417 |
| HspAI | GCGC | 1 cut(s) | 130 |
| Kzo9I | GATC | 1 cut(s) | 463 |
| LguI | GCTCTTC | 2 cut(s) | 210, 438 |
| LmnI | GCTCC | 2 cut(s) | 232, 268 |
| LpnPI | CCDG | 9 cut(s) | 62, 122, 149, 237, 243, 285, 333, 450, 483 |
| LweI | GCATC | 1 cut(s) | 46 |
| MaeIII | GTNAC | 1 cut(s) | 518 |
| MalI | GATC | 1 cut(s) | 465 |
| MboI | GATC | 1 cut(s) | 463 |
| MboII | GAAGA | 4 cut(s) | 194, 213, 227, 425 |
| MhlI | GDGCHC | 2 cut(s) | 154, 433 |
| MluCI | AATT | 8 cut(s) | 48, 65, 135, 156, 260, 451, 506, 525 |
| MlyI | GAGTC | 1 cut(s) | 5 |
| MnlI | CCTC | 2 cut(s) | 199, 316 |
| Mph1103I | ATGCAT | 1 cut(s) | 61 |
| MseI | TTAA | 2 cut(s) | 258, 339 |
| MslI | CAYNNNNRTG | 1 cut(s) | 418 |
| MspI | CCGG | 2 cut(s) | 224, 272 |
| MspR9I | CCNGG | 1 cut(s) | 273 |
| Mva1269I | GAATGC | 1 cut(s) | 59 |
| NciI | CCSGG | 1 cut(s) | 273 |
| NdeII | GATC | 1 cut(s) | 463 |
| NlaIII | CATG | 1 cut(s) | 417 |
| NlaIV | GGNNCC | 2 cut(s) | 228, 270 |
| NsiI | ATGCAT | 1 cut(s) | 61 |
| PciSI | GCTCTTC | 2 cut(s) | 210, 438 |
| PctI | GAATGC | 1 cut(s) | 59 |
| PleI | GAGTC | 1 cut(s) | 5 |
| PpsI | GAGTC | 1 cut(s) | 5 |
| PspN4I | GGNNCC | 2 cut(s) | 228, 270 |
| RsaI | GTAC | 1 cut(s) | 36 |
| RsaNI | GTAC | 1 cut(s) | 35 |
| RseI | CAYNNNNRTG | 1 cut(s) | 418 |
| SapI | GCTCTTC | 2 cut(s) | 210, 438 |
| SaqAI | TTAA | 2 cut(s) | 258, 339 |
| Sau3AI | GATC | 1 cut(s) | 463 |
| SchI | GAGTC | 1 cut(s) | 5 |
| ScrFI | CCNGG | 1 cut(s) | 273 |
| SduI | GDGCHC | 2 cut(s) | 154, 433 |
| SetI | ASST | 5 cut(s) | 81, 222, 246, 258, 290 |
| SfaNI | GCATC | 1 cut(s) | 46 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 418 |
| Sse9I | AATT | 8 cut(s) | 48, 65, 135, 156, 260, 451, 506, 525 |
| SsiI | CCGC | 1 cut(s) | 148 |
| StyD4I | CCNGG | 1 cut(s) | 271 |
| StyI | CCWWGG | 1 cut(s) | 400 |
| TaaI | ACNGT | 1 cut(s) | 39 |
| TaqI | TCGA | 1 cut(s) | 154 |
| TasI | AATT | 8 cut(s) | 48, 65, 135, 156, 260, 451, 506, 525 |
| TatI | WGTACW | 1 cut(s) | 34 |
| Tru1I | TTAA | 2 cut(s) | 258, 339 |
| Tru9I | TTAA | 2 cut(s) | 258, 339 |
| TscAI | CASTG | 1 cut(s) | 237 |
| TspDTI | ATGAA | 2 cut(s) | 60, 195 |
| TspRI | CASTG | 1 cut(s) | 237 |
| XapI | RAATTY | 4 cut(s) | 135, 156, 451, 525 |
| Zsp2I | ATGCAT | 1 cut(s) | 61 |