Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0007016

Physical Location & Seq

Genomic Coordinates Forward (+)

47100769 .. 47110321

Gene Structure 9553 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000025615

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2586 bp

ATGAATCAGCAACGCTCTCGACGTTTCAGAGCTGCAAAAGATGCGGCTGAGGCGGAAGCTGAAGAGGAAAGACTAAGGAAAGAATTTGAGATGGAGGGGACATCATTGGTTTCTAAAGAGAAACCTGAAACTTTAGATTCAAATGTTATTACTCCAGGCACTCCATTTATGGCGGTGCTCTCAGTAGCACTTCAATATTATATACAATTTAAATTGAACAACGACCGTGGTTGGCGGTCTACAAAGGTTATTCTTTCTGATGCCAACGTTCCTGGCGAGGGAGAGCACAAAATAATGTCATACATACGATCGCAACGCAATCTTTTGGGTTCTGATCCTAACACTTGGCATTGTCTTTATGGTCTGGATGCAGATCTAATTATGCTTGCTTTAGCTACACATGAGGTTCACTTCTCAATATTAAGAGAGGTGATTACTCTTCCAGGTCAACAGGAAAAATGTTTTCTTTGTGGACAAGTTGGTCATCTGGCAGCTGAATGTCGTGGTGGAGATGATGTTGCGGCCGATGAAACTCCAGTTCACAAGAAGAAATATCAGTTCCTCAACATCTGGGTGTTGCGTGAATATTTGGAATATGAGCTGGACATACCCAATCCTCCTTTTCAGCTTAATTTTGAAAGGATAGTGGATGATTTTGTGTTTATGTGCTTTTTTGTTGGCAATGATTTTCTTCCACATATGCCAACATTGGAGATCAGGGAGGGTGCAATTAACTTATTGATGCATATTTATAGAAGAGAATTTTCTGCTATGGGTGGCTATCTCACTGATGCGGGTGAGGTATTGTTAGATAGAGTAGAGCATTTTATCCAGTCTGTTGCTGTCTATGAGCGCCAAATTTTTCAAAAGCGGGCTCGAATTCAGCAGGCTTTTGAGAATAATGAAGAGAGACAGAGAAATAGAAGAGAGGCTTGTGAAGAGCTACCGGCTCCAGTGGTAGAAAAGGTGGTGGACAAGGTTAAATTGGGGGAGCCGGGATATACAGAAAGGTATTATGCTGAGAAGTTTCAAGTATCAAAGCCAGAGGAGATTGAAAAAGTTAAAAAAGACTTGGTTCTAAAATATGTAGAAGGCTTATGCTGGGTCTGCCGATATTACTACCAAGGGGTCTGCTCATGGCAATGGTATTATCCATACCATTATGCTCCTTTTGCTTCTGATCTAAAAGATCTAGATGAGTTGGAAATAACATTTTTTTTGGGAGAGCCATTTAAACCCTTTGATCAGCTCATGGGAACCTTACCAGCTGCAAGTTGTAGTGCTCTTCCAGAAAAATACAGAATTTTGATGACTGATCCGTCATCTCCCATTTGTGATTTCTACCCATCTGATTTTGAGATTGACATGAATGGCAAGCGCTTTGCATGGCAGGGCATTGCCAAATTGCCATTCATTGATGAGAAGAAATTGCTTGCTCAGACAAGGAAGCTTGAAAGCACTTTAACGGAGGAAGAGAAAGCTCGAAATAGCGTGATGCTTGATTTGCTTTATGTCTATCGTTCTCATCCTTTGGCGTCGGAGATTATTTTTTACTACCATTTATATTATCAGTGTCCCCCACATGAAAGATTTTTATATGCGATAAATACTAATCTTAGTGGTGGAATGAATGGATTCCTTTGGTTATCTGAGAGGAATGGCTTTAGAAACGTAATCCCTTCCCCTGTGCATGGTTTTCCCAACATAGACTATAACGAAGTCTTAAATGTTACATATCTTAGCCCTGCAGCTCAAAAACACATCCCAGAACCTCCCGAGGGTGTGATCATGCCCAGAAAGGTTGTAAAACCTACGGATATCAAACCTCCCCCTGCGTTATGGCATGAAGACAATGGTCCCCGACGCTACCAAAACAGAGATAGGCCACAAATACCTGGAGCAATTGCTGGAACTGTGTTGGGAGAAGCAGCTCATCGACTTGTCAAGAACACACTAAATCTTAGACCTAGTAATCCATCCTCTGGATTTTGGGATCAATCACAGCCTTCAAGAGCTTCTTCTGGAAACTACAATGGAAACTATCCTGTCAACAGACCAAGACCAGCTGGGCCATCTGGGTATGAAAGGGGTTTCCGTGAAGAACCAAATTATGGAAATTCCTTTAATCCTCAGGGCATCATGGCTAGGCCCAGAGCTCCTTACTCAAATGGTGTGCAGGGTGACAGACAGAGTTTTAGGACACAAGAAAGAACACAGTATCAAGAGCAGGGTTTTAGAGGACAAGAAAGAATACAATATCAAGAACAGTACCGCAACATGAGAACTGGGATGTCTGGTTTAACAATGGAAGGAAGTGTGAGAACCAGGTCTCCTGTAGTGGCGCAACCAGGGATGCCAAATTCAGGATACTCCACAAACCCACATCAGCAGTTTGTGCAGAACATGGGCGCTCTTCCACCGCCACCTACAAAGTGGATCAATAAAGAATCGGGTGCCAATGGTGGGATTTATGGTAGGCATCAGGAAACCGGATATGGCGGACCGTATGAACAGCAGGTGAAAATGGTTTATCAGGTAAAGACACGTCCTCCTCAGGACTTGTCAAACTCTGGAAACCAGGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000291 GO:0000902 GO:0000932 GO:0000956 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003824 GO:0004518 GO:0004527 GO:0004532 GO:0004534 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005844 GO:0006139 GO:0006401 GO:0006402 GO:0006725 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0008409 GO:0009056 GO:0009057 GO:0009266 GO:0009408 GO:0009628 GO:0009653 GO:0009826 GO:0009888 GO:0009892 GO:0009987 GO:0010087 GO:0010286 GO:0010468 GO:0010494 GO:0010586 GO:0010587 GO:0010605 GO:0010629 GO:0016043 GO:0016049 GO:0016070 GO:0016071 GO:0016787 GO:0016788 GO:0016796 GO:0016896 GO:0019222 GO:0019439 GO:0031086 GO:0031087 GO:0032502 GO:0032989 GO:0032991 GO:0033554 GO:0034605 GO:0034641 GO:0034655 GO:0034660 GO:0034661 GO:0035770 GO:0036464 GO:0040007 GO:0040029 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046700 GO:0048519 GO:0048589 GO:0048856 GO:0048869 GO:0050789 GO:0050896 GO:0051301 GO:0051716 GO:0060255 GO:0060560 GO:0065007 GO:0070370 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0090501 GO:0090503 GO:0097159 GO:0140098 GO:1901360 GO:1901361 GO:1901363 GO:1901575 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03008 ko03018 ko04016 map03008 map03018 map04016

Pfam Domains

Protein Families

XRN_N zf-CCHC

Protein Analysis

862

Amino Acids

98.83

Weight (kDa)

6.31

Isoelectric Point (pI)

49.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
XRN_N	PF03159	1 - 143	4.6e-55	XRN 5'-3' exonuclease N-terminus
XRN_M	PF17846	210 - 311	3.4e-43	Xrn1 helical domain
XRN_M	PF17846	321 - 607	1.1e-116	Xrn1 helical domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007016)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G54490 AT1G54490
fragaria_vesca	FvH4_6g03690 FvH4_6g03690
malus_domestica	MD04G1219200.v1.1 MD12G1236200.v1.1
prunus_persica	Prupe.6G338500_v2.0.a1 Prupe.6G338500_v2.0.a1
pyrus_communis	pycom04g19450 pycom12g21730
rosa_chinensis	RchiOBHm_Chr3g0452231
rosa_laevigata	RLG00000025615
rosa_multiflora	Rmu_sc0037132.1_g000001 Rmu_sc0041263.1_g000001
rosa_roxburghii	Rroxscaffold_164G00435930 Rroxscaffold_6G00429350
rosa_rugosa	Rorug02G0639400
rosa_samantha	Rh3AG041300 Rh3BG043000 Rh3BG043200 Rh3CG041400 Rh3CG041600 Rh3DG042300 Rh3DG042500
rosa_wichuraiana	Rw3G003160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	2506
AasI	GACNNNNNNGTC	2 cut(s)	480, 1318
Acc36I	ACCTGC	1 cut(s)	2506
AccB1I	GGYRCC	1 cut(s)	2453
AccB7I	CCANNNNNTGG	2 cut(s)	1982, 2111
AccI	GTMKAC	1 cut(s)	239
AclI	AACGTT	1 cut(s)	267
AclWI	GGATC	4 cut(s)	329, 1310, 2001, 2444
AcoI	YGGCCR	1 cut(s)	522
AcsI	RAATTY	7 cut(s)	83, 761, 858, 879, 1302, 2116, 2359
AcuI	CTGAAG	1 cut(s)	81
AcyI	GRCGYC	1 cut(s)	1535
AfaI	GTAC	1 cut(s)	2270
AfeI	AGCGCT	1 cut(s)	1379
AfiI	CCNNNNNNNGG	7 cut(s)	278, 1691, 1778, 1982, 2111, 2363, 2463
AflIII	ACRYGT	1 cut(s)	2543
AgsI	TTSAA	9 cut(s)	141, 194, 217, 638, 866, 1031, 1055, 1454, 2010
AjiI	CACGTC	1 cut(s)	2546
AjnI	CCWGG	7 cut(s)	154, 271, 442, 1894, 2324, 2347, 2577
AjuI	GAANNNNNNNTTGG	2 cut(s)	1394, 1426
AloI	GAACNNNNNNTCC	2 cut(s)	2314, 2346
Alw21I	GWGCWC	4 cut(s)	180, 288, 1285, 2158
Alw26I	GTCTC	2 cut(s)	904, 2334
AlwI	GGATC	4 cut(s)	329, 1310, 2001, 2444
Ama87I	CYCGRG	1 cut(s)	1775
Aor51HI	AGCGCT	1 cut(s)	1379
AoxI	GGCC	4 cut(s)	522, 1883, 2069, 2147
ApeKI	GCWGC	5 cut(s)	32, 491, 1268, 1748, 1928
ApoI	RAATTY	7 cut(s)	83, 761, 858, 879, 1302, 2116, 2359
Asp700I	GAANNNNTTC	1 cut(s)	1634
AspLEI	GCGC	4 cut(s)	855, 1380, 2344, 2411
AspS9I	GGNCC	4 cut(s)	1856, 2069, 2148, 2501
AsuC2I	CCSGG	1 cut(s)	996
AsuHPI	GGTGA	4 cut(s)	442, 809, 2192, 2530
AvaI	CYCGRG	1 cut(s)	1775
AvaII	GGWCC	2 cut(s)	1856, 2501
AxyI	CCTNAGG	2 cut(s)	2130, 2553
BanI	GGYRCC	1 cut(s)	2453
BanII	GRGCYC	2 cut(s)	877, 2158
BbsI	GAAGAC	1 cut(s)	1854
Bbv12I	GWGCWC	4 cut(s)	180, 288, 1285, 2158
BbvCI	CCTCAGC	1 cut(s)	48
BbvI	GCAGC	5 cut(s)	19, 503, 1255, 1760, 1940
BccI	CCATC	4 cut(s)	85, 1354, 1984, 2080
BcgI	CGANNNNNNTGC	1 cut(s)	33
BciT130I	CCWGG	7 cut(s)	156, 273, 444, 1896, 2326, 2349, 2579
BciVI	GTATCC	1 cut(s)	2360
BclI	TGATCA	2 cut(s)	1243, 1785
BcnI	CCSGG	1 cut(s)	996
BcoDI	GTCTC	2 cut(s)	904, 2334
BfaI	CTAG	3 cut(s)	1193, 1968, 2145
BfmI	CTRYAG	2 cut(s)	1746, 2334
BfoI	RGCGCY	3 cut(s)	856, 1381, 2412
BfuAI	ACCTGC	1 cut(s)	2506
BfuI	GTATCC	1 cut(s)	2360
BglII	AGATCT	2 cut(s)	373, 1189
BisI	GCNGC	7 cut(s)	33, 45, 492, 522, 1269, 1749, 1929
BlsI	GCNGC	7 cut(s)	34, 46, 493, 523, 1270, 1750, 1930
Bme1390I	CCNGG	8 cut(s)	156, 273, 444, 996, 1896, 2326, 2349, 2579
Bme18I	GGWCC	2 cut(s)	1856, 2501
BmeT110I	CYCGRG	1 cut(s)	1775
BmgBI	CACGTC	1 cut(s)	2546
BmgT120I	GGNCC	4 cut(s)	1856, 2069, 2148, 2501
BmiI	GGNNCC	5 cut(s)	951, 993, 1258, 1858, 2455
BmrFI	CCNGG	8 cut(s)	156, 273, 444, 996, 1896, 2326, 2349, 2579
BmrI	ACTGGG	1 cut(s)	2295
BmsI	GCATC	9 cut(s)	31, 250, 358, 732, 781, 1485, 2145, 2343, 2488
BmuI	ACTGGG	1 cut(s)	2295
BoxI	GACNNNNGTC	1 cut(s)	1854
BpiI	GAAGAC	1 cut(s)	1854
BpmI	CTGGAG	4 cut(s)	138, 519, 936, 1917
Bpu10I	CCTNAGC	1 cut(s)	48
BpuMI	CCSGG	1 cut(s)	996
BsaBI	GATNNNNATC	1 cut(s)	372
BsaHI	GRCGYC	1 cut(s)	1535
BsaI	GGTCTC	1 cut(s)	2334
BsaJI	CCNNGG	4 cut(s)	226, 1123, 1776, 2348
BsaWI	WCCGGW	1 cut(s)	2489
BsaXI	ACNNNNNCTCC	6 cut(s)	501, 531, 2314, 2344, 2533, 2563
Bsc4I	CCNNNNNNNGG	7 cut(s)	278, 1691, 1778, 1982, 2111, 2363, 2463
Bse118I	RCCGGY	1 cut(s)	946
Bse1I	ACTGG	4 cut(s)	536, 832, 953, 2290
Bse21I	CCTNAGG	2 cut(s)	2130, 2553
Bse3DI	GCAATG	3 cut(s)	688, 1148, 1395
Bse8I	GATNNNNATC	1 cut(s)	372
BseBI	CCWGG	7 cut(s)	156, 273, 444, 1896, 2326, 2349, 2579
BseDI	CCNNGG	4 cut(s)	226, 1123, 1776, 2348
BseGI	GGATG	7 cut(s)	373, 655, 1525, 1761, 1976, 2295, 2358
BseJI	GATNNNNATC	1 cut(s)	372
BseLI	CCNNNNNNNGG	7 cut(s)	278, 1691, 1778, 1982, 2111, 2363, 2463
BseMI	GCAATG	3 cut(s)	688, 1148, 1395
BseMII	CTCAG	7 cut(s)	39, 195, 1011, 1451, 1641, 2144, 2567
BseNI	ACTGG	4 cut(s)	536, 832, 953, 2290
BseRI	GAGGAG	2 cut(s)	1061, 2541
BseX3I	CGGCCG	1 cut(s)	522
BseXI	GCAGC	5 cut(s)	19, 503, 1255, 1760, 1940
BseYI	CCCAGC	2 cut(s)	1101, 2066
BsgI	GTGCAG	2 cut(s)	2195, 2417
Bsh1285I	CGRYCG	3 cut(s)	226, 311, 525
BshFI	GGCC	4 cut(s)	524, 1885, 2071, 2149
BshNI	GGYRCC	1 cut(s)	2453
BsiEI	CGRYCG	3 cut(s)	226, 311, 525
BsiHKAI	GWGCWC	4 cut(s)	180, 288, 1285, 2158
BsiHKCI	CYCGRG	1 cut(s)	1775
BsiSI	CCGG	3 cut(s)	947, 995, 2490
BslFI	GGGAC	3 cut(s)	112, 1560, 1842
BslI	CCNNNNNNNGG	7 cut(s)	278, 1691, 1778, 1982, 2111, 2363, 2463
BsmAI	GTCTC	2 cut(s)	904, 2334
BsmFI	GGGAC	3 cut(s)	112, 1560, 1842
BsnI	GGCC	4 cut(s)	524, 1885, 2071, 2149
Bso31I	GGTCTC	1 cut(s)	2334
BsoBI	CYCGRG	1 cut(s)	1775
Bsp1286I	GDGCHC	5 cut(s)	180, 288, 877, 1285, 2158
BspANI	GGCC	4 cut(s)	524, 1885, 2071, 2149
BspCNI	CTCAG	7 cut(s)	40, 194, 1012, 1450, 1642, 2143, 2566
BspLI	GGNNCC	5 cut(s)	951, 993, 1258, 1858, 2455
BspMAI	CTGCAG	1 cut(s)	1750
BspMI	ACCTGC	1 cut(s)	2506
BspPI	GGATC	4 cut(s)	329, 1310, 2001, 2444
BspQI	GCTCTTC	3 cut(s)	933, 1290, 2418
BspT107I	GGYRCC	1 cut(s)	2453
BspTNI	GGTCTC	1 cut(s)	2334
BsrDI	GCAATG	3 cut(s)	688, 1148, 1395
BsrFI	RCCGGY	1 cut(s)	946
BsrI	ACTGG	4 cut(s)	536, 832, 953, 2290
BssAI	RCCGGY	1 cut(s)	946
BssECI	CCNNGG	4 cut(s)	226, 1123, 1776, 2348
BssNI	GRCGYC	1 cut(s)	1535
BssT1I	CCWWGG	1 cut(s)	1123
Bst2UI	CCWGG	7 cut(s)	156, 273, 444, 1896, 2326, 2349, 2579
Bst4CI	ACNGT	5 cut(s)	227, 1915, 2217, 2268, 2505
Bst6I	CTCTTC	9 cut(s)	57, 444, 751, 900, 919, 933, 1290, 1467, 2418
BstACI	GRCGYC	1 cut(s)	1535
BstAPI	GCANNNNNTGC	2 cut(s)	41, 2395
BstC8I	GCNNGC	5 cut(s)	387, 873, 888, 1376, 1434
BstDSI	CCRYGG	1 cut(s)	226
BstF5I	GGATG	7 cut(s)	373, 655, 1525, 1761, 1976, 2295, 2358
BstH2I	RGCGCY	3 cut(s)	856, 1381, 2412
BstHHI	GCGC	4 cut(s)	855, 1380, 2344, 2411
BstMAI	GTCTC	2 cut(s)	904, 2334
BstMCI	CGRYCG	3 cut(s)	226, 311, 525
BstMWI	GCNNNNNNNGC	6 cut(s)	41, 50, 1107, 1172, 1504, 2395
BstNI	CCWGG	7 cut(s)	156, 273, 444, 1896, 2326, 2349, 2579
BstPAI	GACNNNNGTC	1 cut(s)	1854
BstSCI	CCNGG	8 cut(s)	154, 271, 442, 994, 1894, 2324, 2347, 2577
BstSFI	CTRYAG	2 cut(s)	1746, 2334
BstV1I	GCAGC	5 cut(s)	19, 503, 1255, 1760, 1940
BstV2I	GAAGAC	1 cut(s)	1854
BstX2I	RGATCY	2 cut(s)	373, 1189
BstYI	RGATCY	2 cut(s)	373, 1189
BstZI	CGGCCG	1 cut(s)	522
Bsu36I	CCTNAGG	2 cut(s)	2130, 2553
BsuI	GTATCC	1 cut(s)	2360
BsuRI	GGCC	4 cut(s)	524, 1885, 2071, 2149
BtgI	CCRYGG	1 cut(s)	226
BtrI	CACGTC	1 cut(s)	2546
BtsCI	GGATG	7 cut(s)	373, 655, 1525, 1761, 1976, 2295, 2358
BtsIMutI	CAGTG	3 cut(s)	786, 960, 1577
BveI	ACCTGC	1 cut(s)	2506
Cac8I	GCNNGC	5 cut(s)	387, 873, 888, 1376, 1434
CfoI	GCGC	4 cut(s)	855, 1380, 2344, 2411
Cfr10I	RCCGGY	1 cut(s)	946
Cfr13I	GGNCC	4 cut(s)	1856, 2069, 2148, 2501
CpoI	CGGWCCG	1 cut(s)	2501
CseI	GACGC	2 cut(s)	1524, 1872
CsiI	ACCWGGT	1 cut(s)	2324
Csp6I	GTAC	1 cut(s)	2269
CspCI	CAANNNNNGTGG	2 cut(s)	208, 243
CspI	CGGWCCG	1 cut(s)	2501
CviQI	GTAC	1 cut(s)	2269
DraI	TTTAAA	2 cut(s)	211, 1234
DrdI	GACNNNNNNGTC	2 cut(s)	480, 1318
DseDI	GACNNNNNNGTC	2 cut(s)	480, 1318
EaeI	YGGCCR	1 cut(s)	522
EagI	CGGCCG	1 cut(s)	522
Eam1104I	CTCTTC	9 cut(s)	57, 444, 751, 900, 919, 933, 1290, 1467, 2418
EarI	CTCTTC	9 cut(s)	57, 444, 751, 900, 919, 933, 1290, 1467, 2418
EciI	GGCGGA	2 cut(s)	68, 2514
Ecl136II	GAGCTC	1 cut(s)	2156
EclXI	CGGCCG	1 cut(s)	522
Eco130I	CCWWGG	1 cut(s)	1123
Eco24I	GRGCYC	2 cut(s)	877, 2158
Eco31I	GGTCTC	1 cut(s)	2334
Eco32I	GATATC	1 cut(s)	1819
Eco47I	GGWCC	2 cut(s)	1856, 2501
Eco47III	AGCGCT	1 cut(s)	1379
Eco52I	CGGCCG	1 cut(s)	522
Eco53kI	GAGCTC	1 cut(s)	2156
Eco57I	CTGAAG	1 cut(s)	81
Eco81I	CCTNAGG	2 cut(s)	2130, 2553
Eco88I	CYCGRG	1 cut(s)	1775
EcoICRI	GAGCTC	1 cut(s)	2156
EcoRI	GAATTC	1 cut(s)	879
EcoRII	CCWGG	7 cut(s)	154, 271, 442, 1894, 2324, 2347, 2577
EcoRV	GATATC	1 cut(s)	1819
EcoT14I	CCWWGG	1 cut(s)	1123
EcoT22I	ATGCAT	1 cut(s)	747
EcoT38I	GRGCYC	2 cut(s)	877, 2158
ErhI	CCWWGG	1 cut(s)	1123
FalI	AAGNNNNNCTT	4 cut(s)	916, 948, 2002, 2034
FaqI	GGGAC	3 cut(s)	112, 1560, 1842
FauI	CCCGC	2 cut(s)	787, 864
FauNDI	CATATG	1 cut(s)	699
FbaI	TGATCA	2 cut(s)	1243, 1785
FblI	GTMKAC	1 cut(s)	239
Fnu4HI	GCNGC	7 cut(s)	33, 45, 492, 522, 1269, 1749, 1929
FokI	GGATG	7 cut(s)	380, 662, 1512, 1748, 1963, 2302, 2365
FriOI	GRGCYC	2 cut(s)	877, 2158
Fsp4HI	GCNGC	7 cut(s)	33, 45, 492, 522, 1269, 1749, 1929
FspBI	CTAG	3 cut(s)	1193, 1968, 2145
GlaI	GCGC	4 cut(s)	854, 1379, 2343, 2410
GluI	GCNGC	7 cut(s)	33, 45, 492, 522, 1269, 1749, 1929
GsaI	CCCAGC	2 cut(s)	1105, 2070
GsuI	CTGGAG	4 cut(s)	138, 519, 936, 1917
HaeII	RGCGCY	3 cut(s)	856, 1381, 2412
HaeIII	GGCC	4 cut(s)	524, 1885, 2071, 2149
HapII	CCGG	3 cut(s)	947, 995, 2490
HgaI	GACGC	2 cut(s)	1524, 1872
HhaI	GCGC	4 cut(s)	855, 1380, 2344, 2411
Hin1I	GRCGYC	1 cut(s)	1535
Hin6I	GCGC	4 cut(s)	853, 1378, 2342, 2409
HinP1I	GCGC	4 cut(s)	853, 1378, 2342, 2409
HincII	GTYRAC	2 cut(s)	449, 2050
HindII	GTYRAC	2 cut(s)	449, 2050
HindIII	AAGCTT	1 cut(s)	1448
HinfI	GANTC	4 cut(s)	4, 137, 1635, 2447
HpaII	CCGG	3 cut(s)	947, 995, 2490
HphI	GGTGA	4 cut(s)	442, 809, 2192, 2530
Hpy166II	GTNNAC	7 cut(s)	240, 409, 449, 473, 541, 973, 2050
Hpy188I	TCNGA	8 cut(s)	29, 259, 334, 1180, 1351, 1440, 1540, 1651
Hpy8I	GTNNAC	7 cut(s)	240, 409, 449, 473, 541, 973, 2050
Hpy99I	CGWCG	3 cut(s)	24, 1540, 1866
HpyAV	CCTTC	4 cut(s)	1085, 1689, 2016, 2303
HpyCH4III	ACNGT	5 cut(s)	227, 1915, 2217, 2268, 2505
HpyCH4IV	ACGT	4 cut(s)	22, 267, 1671, 2545
HpyF10VI	GCNNNNNNNGC	6 cut(s)	41, 50, 1107, 1172, 1504, 2395
HpySE526I	ACGT	4 cut(s)	22, 267, 1671, 2545
Hsp92I	GRCGYC	1 cut(s)	1535
HspAI	GCGC	4 cut(s)	853, 1378, 2342, 2409
Ksp22I	TGATCA	2 cut(s)	1243, 1785
LguI	GCTCTTC	3 cut(s)	933, 1290, 2418
LmnI	GCTCC	5 cut(s)	955, 991, 1171, 1898, 2161
Lsp1109I	GCAGC	5 cut(s)	19, 503, 1255, 1760, 1940
LweI	GCATC	9 cut(s)	31, 250, 358, 732, 781, 1485, 2145, 2343, 2488
MabI	ACCWGGT	1 cut(s)	2324
MaeI	CTAG	3 cut(s)	1193, 1968, 2145
MaeII	ACGT	4 cut(s)	22, 267, 1671, 2545
MaeIII	GTNAC	2 cut(s)	1729, 2180
MfeI	CAATTG	1 cut(s)	1902
MflI	RGATCY	2 cut(s)	373, 1189
MhlI	GDGCHC	5 cut(s)	180, 288, 877, 1285, 2158
MmeI	TCCRAC	2 cut(s)	1182, 1518
Mph1103I	ATGCAT	1 cut(s)	747
MroXI	GAANNNNTTC	1 cut(s)	1634
MslI	CAYNNNNRTG	2 cut(s)	572, 1141
MspA1I	CMGCKG	3 cut(s)	494, 1268, 2066
MspI	CCGG	3 cut(s)	947, 995, 2490
MspR9I	CCNGG	8 cut(s)	156, 273, 444, 996, 1896, 2326, 2349, 2579
MunI	CAATTG	1 cut(s)	1902
MvaI	CCWGG	7 cut(s)	156, 273, 444, 1896, 2326, 2349, 2579
MwoI	GCNNNNNNNGC	6 cut(s)	41, 50, 1107, 1172, 1504, 2395
NciI	CCSGG	1 cut(s)	996
NdeI	CATATG	1 cut(s)	699
NlaIV	GGNNCC	5 cut(s)	951, 993, 1258, 1858, 2455
NmuCI	GTSAC	1 cut(s)	2180
NsiI	ATGCAT	1 cut(s)	747
PaqCI	CACCTGC	1 cut(s)	2506
PciSI	GCTCTTC	3 cut(s)	933, 1290, 2418
PcsI	WCGNNNNNNNCGW	2 cut(s)	19, 273
PdmI	GAANNNNTTC	1 cut(s)	1634
PfeI	GAWTC	4 cut(s)	4, 137, 1635, 2447
PflMI	CCANNNNNTGG	2 cut(s)	1982, 2111
PkrI	GCNGC	7 cut(s)	34, 46, 493, 523, 1270, 1750, 1930
Ple19I	CGATCG	1 cut(s)	311
PshAI	GACNNNNGTC	1 cut(s)	1854
Psp124BI	GAGCTC	1 cut(s)	2158
Psp1406I	AACGTT	1 cut(s)	267
Psp6I	CCWGG	7 cut(s)	154, 271, 442, 1894, 2324, 2347, 2577
PspFI	CCCAGC	2 cut(s)	1101, 2066
PspGI	CCWGG	7 cut(s)	154, 271, 442, 1894, 2324, 2347, 2577
PspN4I	GGNNCC	5 cut(s)	951, 993, 1258, 1858, 2455
PspPI	GGNCC	4 cut(s)	1856, 2069, 2148, 2501
PstI	CTGCAG	1 cut(s)	1750
PsuI	RGATCY	2 cut(s)	373, 1189
PvuI	CGATCG	1 cut(s)	311
PvuII	CAGCTG	3 cut(s)	494, 1268, 2066
RsaI	GTAC	1 cut(s)	2270
RsaNI	GTAC	1 cut(s)	2269
RseI	CAYNNNNRTG	2 cut(s)	572, 1141
Rsr2I	CGGWCCG	1 cut(s)	2501
RsrII	CGGWCCG	1 cut(s)	2501
SacI	GAGCTC	1 cut(s)	2158
SapI	GCTCTTC	3 cut(s)	933, 1290, 2418
SatI	GCNGC	7 cut(s)	33, 45, 492, 522, 1269, 1749, 1929
Sau96I	GGNCC	4 cut(s)	1856, 2069, 2148, 2501
ScrFI	CCNGG	8 cut(s)	156, 273, 444, 996, 1896, 2326, 2349, 2579
SduI	GDGCHC	5 cut(s)	180, 288, 877, 1285, 2158
SexAI	ACCWGGT	1 cut(s)	2324
SfaNI	GCATC	9 cut(s)	31, 250, 358, 732, 781, 1485, 2145, 2343, 2488
SfcI	CTRYAG	2 cut(s)	1746, 2334
SinI	GGWCC	2 cut(s)	1856, 2501
SmiI	ATTTAAAT	1 cut(s)	211
SmiMI	CAYNNNNRTG	2 cut(s)	572, 1141
SspI	AATATT	3 cut(s)	197, 420, 587
SspMI	CTAG	3 cut(s)	1193, 1968, 2145
SstI	GAGCTC	1 cut(s)	2158
StyD4I	CCNGG	8 cut(s)	154, 271, 442, 994, 1894, 2324, 2347, 2577
StyI	CCWWGG	1 cut(s)	1123
SwaI	ATTTAAAT	1 cut(s)	211
TaaI	ACNGT	5 cut(s)	227, 1915, 2217, 2268, 2505
TaiI	ACGT	4 cut(s)	25, 270, 1674, 2548
TaqI	TCGA	4 cut(s)	19, 877, 1483, 1936
TauI	GCSGC	2 cut(s)	47, 524
TfiI	GAWTC	4 cut(s)	4, 137, 1635, 2447
TscAI	CASTG	3 cut(s)	793, 960, 1577
TseFI	GTSAC	1 cut(s)	2180
TseI	GCWGC	5 cut(s)	32, 491, 1268, 1748, 1928
Tsp45I	GTSAC	1 cut(s)	2180
TspGWI	ACGGA	4 cut(s)	1308, 1481, 1829, 2084
TspRI	CASTG	3 cut(s)	793, 960, 1577
Van91I	CCANNNNNTGG	2 cut(s)	1982, 2111
VpaK11BI	GGWCC	2 cut(s)	1856, 2501
XapI	RAATTY	7 cut(s)	83, 761, 858, 879, 1302, 2116, 2359
XbaI	TCTAGA	1 cut(s)	1192
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2430
XmiI	GTMKAC	1 cut(s)	239
XmnI	GAANNNNTTC	1 cut(s)	1634
XspI	CTAG	3 cut(s)	1193, 1968, 2145
Zsp2I	ATGCAT	1 cut(s)	747

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.