5'-3' exoribonuclease
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G54490 AT1G54490 |
| fragaria_vesca | FvH4_6g03690 FvH4_6g03690 |
| malus_domestica | MD04G1219200.v1.1 MD12G1236200.v1.1 |
| prunus_persica | Prupe.6G338500_v2.0.a1 Prupe.6G338500_v2.0.a1 |
| pyrus_communis | pycom04g19450 pycom12g21730 |
| rosa_chinensis | RchiOBHm_Chr3g0452231 |
| rosa_laevigata | RLG00000025615 |
| rosa_multiflora | Rmu_sc0037132.1_g000001 Rmu_sc0041263.1_g000001 |
| rosa_roxburghii | Rroxscaffold_164G00435930 Rroxscaffold_6G00429350 |
| rosa_rugosa | Rorug02G0639400 |
| rosa_samantha | Rh3AG041300 Rh3BG043000 Rh3BG043200 Rh3CG041400 Rh3CG041600 Rh3DG042300 Rh3DG042500 |
| rosa_wichuraiana | Rw3G003160 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 96 |
| AciI | CCGC | 2 cut(s) | 137, 283 |
| AcoI | YGGCCR | 1 cut(s) | 138 |
| AcsI | RAATTY | 2 cut(s) | 270, 291 |
| AgsI | TTSAA | 5 cut(s) | 199, 278, 443, 467, 503 |
| AjnI | CCWGG | 1 cut(s) | 58 |
| AluBI | AGCT | 2 cut(s) | 110, 355 |
| AluI | AGCT | 2 cut(s) | 110, 355 |
| Alw26I | GTCTC | 1 cut(s) | 316 |
| AoxI | GGCC | 1 cut(s) | 138 |
| ApeKI | GCWGC | 1 cut(s) | 107 |
| ApoI | RAATTY | 2 cut(s) | 270, 291 |
| AspLEI | GCGC | 1 cut(s) | 267 |
| AsuC2I | CCSGG | 1 cut(s) | 408 |
| AsuHPI | GGTGA | 1 cut(s) | 20 |
| BanII | GRGCYC | 1 cut(s) | 289 |
| BbvI | GCAGC | 1 cut(s) | 119 |
| BccI | CCATC | 1 cut(s) | 125 |
| BciT130I | CCWGG | 1 cut(s) | 60 |
| BcnI | CCSGG | 1 cut(s) | 408 |
| BcoDI | GTCTC | 1 cut(s) | 316 |
| BfoI | RGCGCY | 1 cut(s) | 268 |
| BisI | GCNGC | 2 cut(s) | 108, 138 |
| BlsI | GCNGC | 2 cut(s) | 109, 139 |
| Bme1390I | CCNGG | 2 cut(s) | 60, 408 |
| BmiI | GGNNCC | 2 cut(s) | 363, 405 |
| BmrFI | CCNGG | 2 cut(s) | 60, 408 |
| BmsI | GCATC | 1 cut(s) | 181 |
| BpmI | CTGGAG | 2 cut(s) | 135, 348 |
| BpuMI | CCSGG | 1 cut(s) | 408 |
| BsaJI | CCNNGG | 1 cut(s) | 535 |
| Bse118I | RCCGGY | 1 cut(s) | 358 |
| Bse1I | ACTGG | 3 cut(s) | 152, 244, 365 |
| Bse3DI | GCAATG | 1 cut(s) | 560 |
| BseBI | CCWGG | 1 cut(s) | 60 |
| BseDI | CCNNGG | 1 cut(s) | 535 |
| BseGI | GGATG | 1 cut(s) | 635 |
| BseMI | GCAATG | 1 cut(s) | 560 |
| BseMII | CTCAG | 1 cut(s) | 423 |
| BseNI | ACTGG | 3 cut(s) | 152, 244, 365 |
| BseRI | GAGGAG | 1 cut(s) | 473 |
| BseX3I | CGGCCG | 1 cut(s) | 138 |
| BseXI | GCAGC | 1 cut(s) | 119 |
| Bsh1285I | CGRYCG | 1 cut(s) | 141 |
| BshFI | GGCC | 1 cut(s) | 140 |
| BsiEI | CGRYCG | 1 cut(s) | 141 |
| BsiSI | CCGG | 2 cut(s) | 359, 407 |
| BsmAI | GTCTC | 1 cut(s) | 316 |
| BsmI | GAATGC | 1 cut(s) | 194 |
| BsnI | GGCC | 1 cut(s) | 140 |
| Bsp1286I | GDGCHC | 1 cut(s) | 289 |
| BspACI | CCGC | 2 cut(s) | 137, 283 |
| BspANI | GGCC | 1 cut(s) | 140 |
| BspCNI | CTCAG | 1 cut(s) | 424 |
| BspLI | GGNNCC | 2 cut(s) | 363, 405 |
| BspQI | GCTCTTC | 2 cut(s) | 60, 345 |
| BsrDI | GCAATG | 1 cut(s) | 560 |
| BsrFI | RCCGGY | 1 cut(s) | 358 |
| BsrI | ACTGG | 3 cut(s) | 152, 244, 365 |
| BssAI | RCCGGY | 1 cut(s) | 358 |
| BssECI | CCNNGG | 1 cut(s) | 535 |
| BssT1I | CCWWGG | 1 cut(s) | 535 |
| Bst2UI | CCWGG | 1 cut(s) | 60 |
| Bst6I | CTCTTC | 4 cut(s) | 60, 312, 331, 345 |
| BstC8I | GCNNGC | 2 cut(s) | 285, 300 |
| BstDEI | CTNAG | 1 cut(s) | 432 |
| BstF5I | GGATG | 1 cut(s) | 635 |
| BstH2I | RGCGCY | 1 cut(s) | 268 |
| BstHHI | GCGC | 1 cut(s) | 267 |
| BstMAI | GTCTC | 1 cut(s) | 316 |
| BstMCI | CGRYCG | 1 cut(s) | 141 |
| BstNI | CCWGG | 1 cut(s) | 60 |
| BstSCI | CCNGG | 2 cut(s) | 58, 406 |
| BstV1I | GCAGC | 1 cut(s) | 119 |
| BstZI | CGGCCG | 1 cut(s) | 138 |
| BsuRI | GGCC | 1 cut(s) | 140 |
| BtsCI | GGATG | 1 cut(s) | 635 |
| BtsIMutI | CAGTG | 1 cut(s) | 372 |
| Cac8I | GCNNGC | 2 cut(s) | 285, 300 |
| CfoI | GCGC | 1 cut(s) | 267 |
| Cfr10I | RCCGGY | 1 cut(s) | 358 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 198, 233 |
| CviAII | CATG | 1 cut(s) | 549 |
| DdeI | CTNAG | 1 cut(s) | 432 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 96 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 96 |
| EaeI | YGGCCR | 1 cut(s) | 138 |
| EagI | CGGCCG | 1 cut(s) | 138 |
| Eam1104I | CTCTTC | 4 cut(s) | 60, 312, 331, 345 |
| EarI | CTCTTC | 4 cut(s) | 60, 312, 331, 345 |
| EclXI | CGGCCG | 1 cut(s) | 138 |
| Eco130I | CCWWGG | 1 cut(s) | 535 |
| Eco24I | GRGCYC | 1 cut(s) | 289 |
| Eco32I | GATATC | 1 cut(s) | 26 |
| Eco52I | CGGCCG | 1 cut(s) | 138 |
| EcoRI | GAATTC | 1 cut(s) | 291 |
| EcoRII | CCWGG | 1 cut(s) | 58 |
| EcoRV | GATATC | 1 cut(s) | 26 |
| EcoT14I | CCWWGG | 1 cut(s) | 535 |
| EcoT22I | ATGCAT | 1 cut(s) | 196 |
| EcoT38I | GRGCYC | 1 cut(s) | 289 |
| ErhI | CCWWGG | 1 cut(s) | 535 |
| FaeI | CATG | 1 cut(s) | 552 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 328, 360 |
| FatI | CATG | 1 cut(s) | 548 |
| FauI | CCCGC | 1 cut(s) | 276 |
| Fnu4HI | GCNGC | 2 cut(s) | 108, 138 |
| FokI | GGATG | 1 cut(s) | 622 |
| FriOI | GRGCYC | 1 cut(s) | 289 |
| Fsp4HI | GCNGC | 2 cut(s) | 108, 138 |
| GlaI | GCGC | 1 cut(s) | 266 |
| GluI | GCNGC | 2 cut(s) | 108, 138 |
| GsuI | CTGGAG | 2 cut(s) | 135, 348 |
| HaeII | RGCGCY | 1 cut(s) | 268 |
| HaeIII | GGCC | 1 cut(s) | 140 |
| HapII | CCGG | 2 cut(s) | 359, 407 |
| HhaI | GCGC | 1 cut(s) | 267 |
| Hin1II | CATG | 1 cut(s) | 552 |
| Hin6I | GCGC | 1 cut(s) | 265 |
| HinP1I | GCGC | 1 cut(s) | 265 |
| HincII | GTYRAC | 1 cut(s) | 65 |
| HindII | GTYRAC | 1 cut(s) | 65 |
| HpaII | CCGG | 2 cut(s) | 359, 407 |
| HphI | GGTGA | 1 cut(s) | 20 |
| Hpy166II | GTNNAC | 4 cut(s) | 65, 89, 157, 385 |
| Hpy8I | GTNNAC | 4 cut(s) | 65, 89, 157, 385 |
| HpyAV | CCTTC | 1 cut(s) | 497 |
| HpyCH4V | TGCA | 1 cut(s) | 194 |
| HpyF3I | CTNAG | 1 cut(s) | 432 |
| Hsp92II | CATG | 1 cut(s) | 552 |
| HspAI | GCGC | 1 cut(s) | 265 |
| LguI | GCTCTTC | 2 cut(s) | 60, 345 |
| LmnI | GCTCC | 2 cut(s) | 367, 403 |
| Lsp1109I | GCAGC | 1 cut(s) | 119 |
| LweI | GCATC | 1 cut(s) | 181 |
| MboII | GAAGA | 5 cut(s) | 47, 175, 329, 348, 362 |
| MhlI | GDGCHC | 1 cut(s) | 289 |
| MluCI | AATT | 5 cut(s) | 183, 200, 270, 291, 395 |
| MnlI | CCTC | 2 cut(s) | 334, 451 |
| Mph1103I | ATGCAT | 1 cut(s) | 196 |
| MseI | TTAA | 2 cut(s) | 393, 474 |
| MslI | CAYNNNNRTG | 1 cut(s) | 553 |
| MspA1I | CMGCKG | 1 cut(s) | 110 |
| MspI | CCGG | 2 cut(s) | 359, 407 |
| MspR9I | CCNGG | 2 cut(s) | 60, 408 |
| Mva1269I | GAATGC | 1 cut(s) | 194 |
| MvaI | CCWGG | 1 cut(s) | 60 |
| NciI | CCSGG | 1 cut(s) | 408 |
| NlaIII | CATG | 1 cut(s) | 552 |
| NlaIV | GGNNCC | 2 cut(s) | 363, 405 |
| NsiI | ATGCAT | 1 cut(s) | 196 |
| PciSI | GCTCTTC | 2 cut(s) | 60, 345 |
| PctI | GAATGC | 1 cut(s) | 194 |
| PkrI | GCNGC | 2 cut(s) | 109, 139 |
| Psp6I | CCWGG | 1 cut(s) | 58 |
| PspGI | CCWGG | 1 cut(s) | 58 |
| PspN4I | GGNNCC | 2 cut(s) | 363, 405 |
| PvuII | CAGCTG | 1 cut(s) | 110 |
| RseI | CAYNNNNRTG | 1 cut(s) | 553 |
| SapI | GCTCTTC | 2 cut(s) | 60, 345 |
| SaqAI | TTAA | 2 cut(s) | 393, 474 |
| SatI | GCNGC | 2 cut(s) | 108, 138 |
| ScrFI | CCNGG | 2 cut(s) | 60, 408 |
| SduI | GDGCHC | 1 cut(s) | 289 |
| SetI | ASST | 7 cut(s) | 64, 112, 216, 357, 381, 393, 425 |
| SfaNI | GCATC | 1 cut(s) | 181 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 553 |
| Sse9I | AATT | 5 cut(s) | 183, 200, 270, 291, 395 |
| SsiI | CCGC | 2 cut(s) | 137, 283 |
| StyD4I | CCNGG | 2 cut(s) | 58, 406 |
| StyI | CCWWGG | 1 cut(s) | 535 |
| TaqI | TCGA | 2 cut(s) | 22, 289 |
| TasI | AATT | 5 cut(s) | 183, 200, 270, 291, 395 |
| TauI | GCSGC | 1 cut(s) | 140 |
| Tru1I | TTAA | 2 cut(s) | 393, 474 |
| Tru9I | TTAA | 2 cut(s) | 393, 474 |
| TscAI | CASTG | 1 cut(s) | 372 |
| TseI | GCWGC | 1 cut(s) | 107 |
| TspDTI | ATGAA | 3 cut(s) | 159, 195, 330 |
| TspRI | CASTG | 1 cut(s) | 372 |
| XapI | RAATTY | 2 cut(s) | 270, 291 |
| Zsp2I | ATGCAT | 1 cut(s) | 196 |