pycom04g19450

5'-3' exoribonuclease

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr4
Physical Location & Seq
Forward (+)
21178142 .. 21183681
5540 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom04g19450.4

Sequence Viewer

Length: 1392 bp
ATGGGAGGTTATCTTACTGATGCGGGTGAGGTATTGTTAGACAGAGTAGAGCATTTTATTCAGTCTGTTGCTGTTTTTGAAAGCCAAATCTTTCAAAAGCGGGTTCGAATTCAGCAGGCTATTGAGAATAATGAAGAGAGACATATAGCTAGAAGAGAAACTTCAGCAGAGCTACCGGTGATGGTGATGGACAAGGTTAAATTGGGAGAGCCTGGATATACAGAAAGGTATTATGCTGAGAAATTTCAAGTATCAACACCAGAGGAGATTGATGAAGTCAAAAAGGACTTGGTTTTAAAATATGTAGAAGGCTTATGTTGGGTTTGCCGATATTATTACCAAGGAGTTTGCTCATGGCAATGGTATTATCCATACCATTATGCTCCTTTTGCTTCTGATCTCAAAGATTTAAATGAACTGGAAATAACATTTTTCGTGGGAGAGCCATTTAAGCCCTTCGATCAGCTCATGGGAACCCTACCAGCTGCAAGTCAGGGTGTTGCCAAATTGCCGTTCATTAACGAGATGAAATTGCTTACGGAGACAAGGAAGCTTGAAAGCACTTTAACGGAAGAAGAGCAGGCTCGGAATAGCGTGATGCTTGATTTGCTTTATGTTTATCGTTCTCATCCTTTGGCAGCACAAATCAGTATGTACTACCAACAGTTTTATCAGACACCCCTACATGAAAGACACACATGGCAGATAGACCCAATTGCTAGTGACAGAATGAATGGATTCCTTTGGTTATCTGAGAGAAATGGCATTAGATATCTAATCCCTTCCCCTATTCGTGGTTACCCTGACCTTGATTACAACCAAGTCTTAAATGTTACATATCTTAATCCGGCAGCTCATAAACACAACCCAGAACTTCCTGAGGGTGTGATCCTGCCCAGAAAGGTTGTAAGACCTACGGACATCAAACCATTCCCTACGTTATGGCACGACGAAGGTCCTCGACGCCAAGGCAGAGAGAGGCCGCAAATACCTGGAGCAATTGCTGGACCCATGTTGGGAGAAGCAGCTCACCGACTCGTCAAGAGCACCCTTAATATTAGACCTAATGGTTCATCCTCTGGATTATTGGATCAACCGCCATTACGAAATTCCGGAAATTATGCAGGAAATTATCCAGTCAACAAACCAAGGCCAGCTGGGCCCTCTGGGTATGAAAGGGGCTTCCGCGAAGAAGCAACGTATGGAAATTCCTTCAATCCTCAGGTCATGATGGCTAGGCCTAGATTTCCTGCATCAAATGGTATGCAAGGTGACAGACAGAATTTTAGGGCACAAGAAAGAGTACAATATCAAGAAGAGAATTTTAGGACACAAGATAGAGTACAAGATCAAGAACAGTACAACCTGATCGATCCGCGATGTCTAGTTTAA

Protein Analysis

464

Amino Acids

53.59

Weight (kDa)

6.12

Isoelectric Point (pI)

46.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 1188, 1378
AccIII TCCGGA 1 cut(s) 1112
AciI CCGC 6 cut(s) 23, 100, 983, 1097, 1186, 1376
AclWI GGATC 3 cut(s) 883, 1098, 1367
AcsI RAATTY 6 cut(s) 108, 242, 1108, 1207, 1282, 1321
AcuI CTGAAG 1 cut(s) 147
AcyI GRCGYC 1 cut(s) 964
AfaI GTAC 4 cut(s) 656, 1305, 1344, 1361
AfiI CCNNNNNNNGG 2 cut(s) 794, 1016
AgeI ACCGGT 1 cut(s) 175
AgsI TTSAA 5 cut(s) 80, 95, 248, 557, 1216
AjnI CCWGG 2 cut(s) 211, 991
AjuI GAANNNNNNNTTGG 2 cut(s) 497, 529
AluBI AGCT 8 cut(s) 149, 172, 466, 485, 553, 854, 1028, 1157
AluI AGCT 8 cut(s) 149, 172, 466, 485, 553, 854, 1028, 1157
Alw21I GWGCWC 1 cut(s) 1049
Alw26I GTCTC 2 cut(s) 133, 536
AlwI GGATC 3 cut(s) 883, 1098, 1367
Aor13HI TCCGGA 1 cut(s) 1112
AoxI GGCC 4 cut(s) 980, 1151, 1160, 1238
ApaI GGGCCC 1 cut(s) 1164
ApeKI GCWGC 4 cut(s) 485, 638, 851, 1025
ApoI RAATTY 6 cut(s) 108, 242, 1108, 1207, 1282, 1321
AsiGI ACCGGT 1 cut(s) 175
Asp700I GAANNNNTTC 1 cut(s) 737
AspS9I GGNCC 4 cut(s) 956, 1007, 1160, 1161
AsuHPI GGTGA 5 cut(s) 38, 190, 196, 1022, 1283
AsuII TTCGAA 1 cut(s) 106
AvaII GGWCC 2 cut(s) 956, 1007
AxyI CCTNAGG 2 cut(s) 879, 1221
BaeGI GKGCMC 2 cut(s) 1164, 1294
BanII GRGCYC 1 cut(s) 1164
Bbv12I GWGCWC 1 cut(s) 1049
BbvI GCAGC 4 cut(s) 472, 650, 863, 1037
BccI CCATC 3 cut(s) 175, 181, 1225
BceAI ACGGC 1 cut(s) 496
BciT130I CCWGG 2 cut(s) 213, 993
BcoDI GTCTC 2 cut(s) 133, 536
BfaI CTAG 5 cut(s) 150, 720, 1236, 1242, 1385
BglI GCCNNNNNGGC 1 cut(s) 1159
BisI GCNGC 5 cut(s) 486, 639, 852, 983, 1026
BlsI GCNGC 5 cut(s) 487, 640, 853, 984, 1027
Bme1390I CCNGG 2 cut(s) 213, 993
Bme18I GGWCC 2 cut(s) 956, 1007
BmgT120I GGNCC 4 cut(s) 956, 1007, 1160, 1161
BmiI GGNNCC 3 cut(s) 475, 1009, 1162
BmrFI CCNGG 2 cut(s) 213, 993
BmsI GCATC 3 cut(s) 10, 588, 1262
BoxI GACNNNNGTC 1 cut(s) 954
BpmI CTGGAG 1 cut(s) 1014
Bpu14I TTCGAA 1 cut(s) 106
Bsa29I ATCGAT 1 cut(s) 1371
BsaHI GRCGYC 1 cut(s) 964
BsaJI CCNNGG 3 cut(s) 340, 967, 1148
BsaWI WCCGGW 2 cut(s) 175, 1112
Bsc4I CCNNNNNNNGG 2 cut(s) 794, 1016
Bse118I RCCGGY 1 cut(s) 175
Bse1I ACTGG 2 cut(s) 423, 1136
Bse21I CCTNAGG 2 cut(s) 879, 1221
Bse3DI GCAATG 1 cut(s) 365
BseAI TCCGGA 1 cut(s) 1112
BseBI CCWGG 2 cut(s) 213, 993
BseCI ATCGAT 1 cut(s) 1371
BseDI CCNNGG 3 cut(s) 340, 967, 1148
BseGI GGATG 2 cut(s) 628, 1073
BseLI CCNNNNNNNGG 2 cut(s) 794, 1016
BseMI GCAATG 1 cut(s) 365
BseMII CTCAG 4 cut(s) 228, 744, 870, 1235
BseNI ACTGG 2 cut(s) 423, 1136
BseRI GAGGAG 1 cut(s) 278
BseSI GKGCMC 2 cut(s) 1164, 1294
BseXI GCAGC 4 cut(s) 472, 650, 863, 1037
BseYI CCCAGC 1 cut(s) 1157
Bsh1236I CGCG 2 cut(s) 1188, 1378
BshFI GGCC 4 cut(s) 982, 1153, 1162, 1240
BshTI ACCGGT 1 cut(s) 175
BshVI ATCGAT 1 cut(s) 1371
BsiHKAI GWGCWC 1 cut(s) 1049
BsiSI CCGG 3 cut(s) 176, 848, 1113
BslI CCNNNNNNNGG 2 cut(s) 794, 1016
BsmAI GTCTC 2 cut(s) 133, 536
BsnI GGCC 4 cut(s) 982, 1153, 1162, 1240
Bsp119I TTCGAA 1 cut(s) 106
Bsp120I GGGCCC 1 cut(s) 1160
Bsp1286I GDGCHC 3 cut(s) 1049, 1164, 1294
Bsp13I TCCGGA 1 cut(s) 1112
Bsp143I GATC 7 cut(s) 397, 460, 888, 1090, 1348, 1368, 1372
BspACI CCGC 6 cut(s) 23, 100, 983, 1097, 1186, 1376
BspANI GGCC 4 cut(s) 982, 1153, 1162, 1240
BspCNI CTCAG 4 cut(s) 229, 745, 871, 1234
BspDI ATCGAT 1 cut(s) 1371
BspEI TCCGGA 1 cut(s) 1112
BspFNI CGCG 2 cut(s) 1188, 1378
BspHI TCATGA 1 cut(s) 1227
BspLI GGNNCC 3 cut(s) 475, 1009, 1162
BspPI GGATC 3 cut(s) 883, 1098, 1367
BspQI GCTCTTC 1 cut(s) 570
BspT104I TTCGAA 1 cut(s) 106
BsrDI GCAATG 1 cut(s) 365
BsrFI RCCGGY 1 cut(s) 175
BsrI ACTGG 2 cut(s) 423, 1136
BssAI RCCGGY 1 cut(s) 175
BssECI CCNNGG 3 cut(s) 340, 967, 1148
BssMI GATC 7 cut(s) 397, 460, 888, 1090, 1348, 1368, 1372
BssNI GRCGYC 1 cut(s) 964
BssT1I CCWWGG 3 cut(s) 340, 967, 1148
Bst2UI CCWGG 2 cut(s) 213, 993
Bst4CI ACNGT 2 cut(s) 666, 1359
Bst6I CTCTTC 4 cut(s) 129, 148, 570, 1311
BstACI GRCGYC 1 cut(s) 964
BstBI TTCGAA 1 cut(s) 106
BstC8I GCNNGC 3 cut(s) 117, 582, 1155
BstDEI CTNAG 4 cut(s) 237, 753, 879, 1221
BstEII GGTNACC 1 cut(s) 797
BstF5I GGATG 2 cut(s) 628, 1073
BstFNI CGCG 2 cut(s) 1188, 1378
BstKTI GATC 7 cut(s) 400, 463, 891, 1093, 1351, 1371, 1375
BstMAI GTCTC 2 cut(s) 133, 536
BstMBI GATC 7 cut(s) 397, 460, 888, 1090, 1348, 1368, 1372
BstMWI GCNNNNNNNGC 4 cut(s) 389, 451, 607, 1159
BstNI CCWGG 2 cut(s) 213, 993
BstPAI GACNNNNGTC 1 cut(s) 954
BstPI GGTNACC 1 cut(s) 797
BstSCI CCNGG 2 cut(s) 211, 991
BstSLI GKGCMC 2 cut(s) 1164, 1294
BstUI CGCG 2 cut(s) 1188, 1378
BstV1I GCAGC 4 cut(s) 472, 650, 863, 1037
Bsu15I ATCGAT 1 cut(s) 1371
Bsu36I CCTNAGG 2 cut(s) 879, 1221
BsuRI GGCC 4 cut(s) 982, 1153, 1162, 1240
BsuTUI ATCGAT 1 cut(s) 1371
BtsCI GGATG 2 cut(s) 628, 1073
Cac8I GCNNGC 3 cut(s) 117, 582, 1155
CciI TCATGA 1 cut(s) 1227
Cfr10I RCCGGY 1 cut(s) 175
Cfr13I GGNCC 4 cut(s) 956, 1007, 1160, 1161
ClaI ATCGAT 1 cut(s) 1371
CseI GACGC 1 cut(s) 972
Csp6I GTAC 4 cut(s) 655, 1304, 1343, 1360
CspAI ACCGGT 1 cut(s) 175
CviAII CATG 6 cut(s) 354, 469, 686, 699, 1012, 1228
CviQI GTAC 4 cut(s) 655, 1304, 1343, 1360
DdeI CTNAG 4 cut(s) 237, 753, 879, 1221
DpnI GATC 7 cut(s) 399, 462, 890, 1092, 1350, 1370, 1374
DpnII GATC 7 cut(s) 397, 460, 888, 1090, 1348, 1368, 1372
DraI TTTAAA 2 cut(s) 297, 411
Eam1104I CTCTTC 4 cut(s) 129, 148, 570, 1311
EarI CTCTTC 4 cut(s) 129, 148, 570, 1311
Eco130I CCWWGG 3 cut(s) 340, 967, 1148
Eco147I AGGCCT 1 cut(s) 1240
Eco24I GRGCYC 1 cut(s) 1164
Eco32I GATATC 1 cut(s) 773
Eco47I GGWCC 2 cut(s) 956, 1007
Eco57I CTGAAG 1 cut(s) 147
Eco81I CCTNAGG 2 cut(s) 879, 1221
Eco91I GGTNACC 1 cut(s) 797
EcoO109I RGGNCCY 2 cut(s) 956, 1161
EcoO65I GGTNACC 1 cut(s) 797
EcoRI GAATTC 1 cut(s) 108
EcoRII CCWGG 2 cut(s) 211, 991
EcoRV GATATC 1 cut(s) 773
EcoT14I CCWWGG 3 cut(s) 340, 967, 1148
EcoT38I GRGCYC 1 cut(s) 1164
ErhI CCWWGG 3 cut(s) 340, 967, 1148
FaeI CATG 6 cut(s) 357, 472, 689, 702, 1015, 1231
FalI AAGNNNNNCTT 2 cut(s) 145, 177
FatI CATG 6 cut(s) 353, 468, 685, 698, 1011, 1227
FauI CCCGC 2 cut(s) 16, 93
Fnu4HI GCNGC 5 cut(s) 486, 639, 852, 983, 1026
FokI GGATG 2 cut(s) 615, 1060
FriOI GRGCYC 1 cut(s) 1164
Fsp4HI GCNGC 5 cut(s) 486, 639, 852, 983, 1026
FspBI CTAG 5 cut(s) 150, 720, 1236, 1242, 1385
GluI GCNGC 5 cut(s) 486, 639, 852, 983, 1026
GsaI CCCAGC 1 cut(s) 1161
GsuI CTGGAG 1 cut(s) 1014
HaeIII GGCC 4 cut(s) 982, 1153, 1162, 1240
HapII CCGG 3 cut(s) 176, 848, 1113
HgaI GACGC 1 cut(s) 972
Hin1I GRCGYC 1 cut(s) 964
Hin1II CATG 6 cut(s) 357, 472, 689, 702, 1015, 1231
HincII GTYRAC 1 cut(s) 1141
HindII GTYRAC 1 cut(s) 1141
HindIII AAGCTT 1 cut(s) 551
HinfI GANTC 2 cut(s) 738, 1035
HpaII CCGG 3 cut(s) 176, 848, 1113
HphI GGTGA 5 cut(s) 38, 190, 196, 1022, 1283
Hpy166II GTNNAC 1 cut(s) 1141
Hpy188I TCNGA 4 cut(s) 397, 588, 675, 754
Hpy188III TCNNGA 7 cut(s) 878, 1042, 1080, 1113, 1228, 1313, 1352
Hpy8I GTNNAC 1 cut(s) 1141
Hpy99I CGWCG 2 cut(s) 953, 966
HpyAV CCTTC 5 cut(s) 302, 466, 792, 947, 1222
HpyCH4III ACNGT 2 cut(s) 666, 1359
HpyCH4IV ACGT 2 cut(s) 938, 1199
HpyCH4V TGCA 4 cut(s) 488, 1124, 1253, 1267
HpyF10VI GCNNNNNNNGC 4 cut(s) 389, 451, 607, 1159
HpyF3I CTNAG 4 cut(s) 237, 753, 879, 1221
HpySE526I ACGT 2 cut(s) 938, 1199
Hsp92I GRCGYC 1 cut(s) 964
Hsp92II CATG 6 cut(s) 357, 472, 689, 702, 1015, 1231
Kpn2I TCCGGA 1 cut(s) 1112
Kzo9I GATC 7 cut(s) 397, 460, 888, 1090, 1348, 1368, 1372
LguI GCTCTTC 1 cut(s) 570
LmnI GCTCC 2 cut(s) 388, 995
Lsp1109I GCAGC 4 cut(s) 472, 650, 863, 1037
LweI GCATC 3 cut(s) 10, 588, 1262
MaeI CTAG 5 cut(s) 150, 720, 1236, 1242, 1385
MaeII ACGT 2 cut(s) 938, 1199
MaeIII GTNAC 4 cut(s) 722, 797, 832, 1271
MalI GATC 7 cut(s) 399, 462, 890, 1092, 1350, 1370, 1374
MboI GATC 7 cut(s) 397, 460, 888, 1090, 1348, 1368, 1372
MboII GAAGA 6 cut(s) 146, 165, 584, 587, 1202, 1328
MfeI CAATTG 2 cut(s) 714, 999
MhlI GDGCHC 3 cut(s) 1049, 1164, 1294
MlyI GAGTC 1 cut(s) 1029
MnlI CCTC 8 cut(s) 22, 256, 874, 969, 972, 1087, 1174, 1230
MroI TCCGGA 1 cut(s) 1112
MroXI GAANNNNTTC 1 cut(s) 737
MslI CAYNNNNRTG 1 cut(s) 358
MspA1I CMGCKG 2 cut(s) 485, 1157
MspI CCGG 3 cut(s) 176, 848, 1113
MspR9I CCNGG 2 cut(s) 213, 993
MunI CAATTG 2 cut(s) 714, 999
MvaI CCWGG 2 cut(s) 213, 993
MvnI CGCG 2 cut(s) 1188, 1378
MwoI GCNNNNNNNGC 4 cut(s) 389, 451, 607, 1159
NdeII GATC 7 cut(s) 397, 460, 888, 1090, 1348, 1368, 1372
NlaIII CATG 6 cut(s) 357, 472, 689, 702, 1015, 1231
NlaIV GGNNCC 3 cut(s) 475, 1009, 1162
NmuCI GTSAC 2 cut(s) 722, 1271
NspV TTCGAA 1 cut(s) 106
PagI TCATGA 1 cut(s) 1227
PceI AGGCCT 1 cut(s) 1240
PciSI GCTCTTC 1 cut(s) 570
PdmI GAANNNNTTC 1 cut(s) 737
PfeI GAWTC 1 cut(s) 738
PinAI ACCGGT 1 cut(s) 175
PkrI GCNGC 5 cut(s) 487, 640, 853, 984, 1027
PleI GAGTC 1 cut(s) 1029
PpsI GAGTC 1 cut(s) 1029
PpuMI RGGWCCY 1 cut(s) 956
PshAI GACNNNNGTC 1 cut(s) 954
Psp5II RGGWCCY 1 cut(s) 956
Psp6I CCWGG 2 cut(s) 211, 991
PspEI GGTNACC 1 cut(s) 797
PspFI CCCAGC 1 cut(s) 1157
PspGI CCWGG 2 cut(s) 211, 991
PspN4I GGNNCC 3 cut(s) 475, 1009, 1162
PspOMI GGGCCC 1 cut(s) 1160
PspPI GGNCC 4 cut(s) 956, 1007, 1160, 1161
PspPPI RGGWCCY 1 cut(s) 956
PvuII CAGCTG 2 cut(s) 485, 1157
RsaI GTAC 4 cut(s) 656, 1305, 1344, 1361
RsaNI GTAC 4 cut(s) 655, 1304, 1343, 1360
RseI CAYNNNNRTG 1 cut(s) 358
SapI GCTCTTC 1 cut(s) 570
SatI GCNGC 5 cut(s) 486, 639, 852, 983, 1026
Sau3AI GATC 7 cut(s) 397, 460, 888, 1090, 1348, 1368, 1372
Sau96I GGNCC 4 cut(s) 956, 1007, 1160, 1161
SchI GAGTC 1 cut(s) 1029
ScrFI CCNGG 2 cut(s) 213, 993
SduI GDGCHC 3 cut(s) 1049, 1164, 1294
SfaNI GCATC 3 cut(s) 10, 588, 1262
SfiI GGCCNNNNNGGCC 1 cut(s) 1159
SfuI TTCGAA 1 cut(s) 106
SinI GGWCC 2 cut(s) 956, 1007
SmiI ATTTAAAT 1 cut(s) 411
SmiMI CAYNNNNRTG 1 cut(s) 358
SseBI AGGCCT 1 cut(s) 1240
SsiI CCGC 6 cut(s) 23, 100, 983, 1097, 1186, 1376
SspI AATATT 1 cut(s) 1057
SspMI CTAG 5 cut(s) 150, 720, 1236, 1242, 1385
StuI AGGCCT 1 cut(s) 1240
StyD4I CCNGG 2 cut(s) 211, 991
StyI CCWWGG 3 cut(s) 340, 967, 1148
SwaI ATTTAAAT 1 cut(s) 411
TaaI ACNGT 2 cut(s) 666, 1359
TaiI ACGT 2 cut(s) 941, 1202
TaqI TCGA 4 cut(s) 106, 459, 961, 1371
TatI WGTACW 4 cut(s) 654, 1303, 1342, 1359
TauI GCSGC 1 cut(s) 985
TfiI GAWTC 1 cut(s) 738
TseFI GTSAC 2 cut(s) 722, 1271
TseI GCWGC 4 cut(s) 485, 638, 851, 1025
Tsp45I GTSAC 2 cut(s) 722, 1271
TspDTI ATGAA 9 cut(s) 147, 288, 429, 505, 542, 702, 746, 1062, 1188
TspGWI ACGGA 3 cut(s) 554, 584, 932
VpaK11BI GGWCC 2 cut(s) 956, 1007
XapI RAATTY 6 cut(s) 108, 242, 1108, 1207, 1282, 1321
XmnI GAANNNNTTC 1 cut(s) 737
XspI CTAG 5 cut(s) 150, 720, 1236, 1242, 1385
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.