Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0007016

Physical Location & Seq

Genomic Coordinates Reverse (-)

2753056 .. 2761688

Gene Structure 8633 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G003160.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2961 bp

ATGGGCGTCCCCGCGTTTTACCGCTGGCTGGCGGATCGGTACCCGCTCTCGATCGTCGACGTGGTGGAAGAACACCCCAGGGAGGACCCGAACGGCGTGCCGAGACCAATCGACGTCTCGAGGCCAAACCCTAACGGCTACGAGTACGATAACCTTTACCTCGACATGAACGGCATTATACATCCCTGTTTTCATCCCGACGGCCGACCTGCCCCTGCTACTTATCAGGACGTATTCAAGTCAATATTTGACTACATTGATCATCTCTTCACGCTGGTGCGCCCAAGAAAGCTTCTTTTTATGGCGATTGATGGGGTAGCACCAAGAGCTAAAATGAATCAGCAACGCTCTCGACGTTTCAGAGCTGCAAAAGATGCGGCTGAGGCGGAAGCTGAAGAGGAAAGACTAAAGAAAGAATTTGAGATGGAGGGGACATCATTGGTTTCTAAAGAGAAACCTGAAACTTCAGATACAAATGTTATTACTCCAGGCACTCAATTTATGGCGGTGCTCTCAGTAGCACTTCAATATTTTATACAATTTAAATTGAACAACGACCGTGGTTGGCGGTCTACAAAGGTTATTCTTTCTGATGCCAACGTTCCTGGCGAGGGAGAGCACAAAATAATGTCATACATACGATCGCAACGCAATCTTTTGGGTTCTGATCCTAATACTCGGCATTGTCTTTATGGTCTGGATGCAGATCTAATTATGCTTGCTTTAGCTACACATGAGGTTCACTTCTCAATATTAAGAGAGGTGATTACTCTTCCAGGTCAACAGGAAAAATGTTTTCTTTGTGGACAAGTTGGTCATCTGGCAGCTGAATGTCGTGGTGGAGATGATGGTGCGGCTGATGAAACTCCAGTTCACAAGAAGAAATATCAGTTCCTCAACATCTGGGTGTTGCGTGAATATTTGGAATACGAGCTGAACATACCCAATCCTCCTTTTCCGCTTAATTTGGAAAGGATAGTGGATGATTTTGTGTTTATGTGCTTTTTTGTTGGCAATGATTTTCTTCCACATATGCCAACATTGGAGATCAGAGAGGGTGCAATTAATTTATTATTGCATATTTATAGAAGAGAATTTTCTGCTATGGGTGGCTATCTCACTGATGCGGGTGAGGTATTGTTAGATAGAGTAGAGCATTTTATCCAGTCTGTTGCTGTCTATGAGCACCAAATTTTTCAAAAGCGGGCTCGAATTCAGCAGGCTTTTGAGAATAATGAAGAGAGACAGAGAAATAGAAGAGAGGCTTGTGAAGAGCTACCGGCTCCAGTGGTAGAAAAGGTGGTGGACAAGGTTAAATTGGGGGAGCCGGGATATACAGAAAGGTATTATGCTGAGAAGTTTCAAGTATCAAAGCCAGAGGAGATTGAACAAGTTAAAAAAGACTTGGTTCTAAAATATGTAGAAGGCTTATGTTGGGTCTGCCGATATTACTACCAAGGGGTCTGCTCATGGCAATGGTATTATCCATACCATTATGCTCCTTTTGCGTCTGATCTAAAAGATCTAGATGAGTTGGAAATAACATTTTTTTTGGGAGAGCCATTTAAACCCTTTGATCAGCTCATGGGAACCTTACCAGCTGCAAGTTGTAGTGCTCTTCCAGAAAAATACAGAAATTTGATGACTGATCCATCATCTCCCATTTGTGATTTCTACCCATCTGATTTTGAGATTGACATGAATGGCAAGCGCTTTGCGTGGCAGGGCATTGCCAAATTGCCATTCATTGATGAGAAGAAATTGCTTGCTCAGACAAGGAAGCTTGAAAGCACTTTAACGGAGGAAGAGAAAGCTCGAAATAGCAGGATGCTTGATTTGCTTTATGTCTATCCTTCTCATCCTTTGGCGTCGGATATTATTTTGTACTACCATTTATATTATCAGAGTCCCCCACATGAAAGATTTTTCTATACGATAAATACTAATCATAGTGGTGGAATGAATGGATTCCTTTGGTTATCTGAGAGGAATGGCATTAGAAACGTAATCCCTTCCCCTGTGCATGGTTTTCCCAACATAGACTGTAACGAAGTCTTAAATGTTACATATGTTGGCCCTGCAGCTCAAAAACACAGCCCAGAACCTCCCGAGGGTGTGATCATGCCCAGAAAGGTTGTAAAACCTACGGATATCAAACCTCCCCCTGCGTTATGGCATGAAGACAATGGTCCCCGACGCTACCAAAACAGAGATAGGCCACAAATACCTGGAGCAATTGCTGGAAATGTGTTGGGAGAAGCAGCTCATCGCCTTGTCAAGAACACACTAAATCTTAAACCTAGTAATCCATCCTCTGGATTTTGGGATCAATCACAGCCTTTAAGAGCTTCTTCTGGAAACTACAATGGAAACTATCCAGTCAACAGACCAAGACCAGCTGGGCCATCTGGGTATGAAAGGGGTTTCCGTGAAGAACCAAATTATGGAAATTCCTTTAATCCTCAGGGCATCATGGCTAGGCCCAGAGCTCCTTACTCAAATGGTGTGCAAGGTGACAGACAGAGTTTTAGGACACAAGAAAGAACACAGTATCAAGAGCAGAGTTTTAGAGGACAAGAAAGAATACAATATCAAGAACAGTACCGCAACATGAGAACTGGGATGTCTAGTTTAACAATGGAAGGAAGTGTGAGAACCAGGTCTCCTGTAGTGGCGCAACCAGGGATGCCAAATTCAGGATACTCCACAAACCCACATCAGCAGTTTGTGCCAAATTCAGGATACTCCACAAACCCACATCAGCAGTTTGTGCAGAACATGGGCGCTCTTCCACCGCCACCTACAAAGTGGATCAACAAAGAATTCGGTGCCAATGGTGGGATTTATGGTAGGCATCAGGAAACCGGATATGGCGGACCATATGAGCAGCAGGTGAAAAAGGTTTATCAGGTAAAGACACGTCCTCCTCAGGACTTGTCAAACTCTGGAAACCAGGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000291 GO:0000902 GO:0000932 GO:0000956 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003824 GO:0004518 GO:0004527 GO:0004532 GO:0004534 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005844 GO:0006139 GO:0006401 GO:0006402 GO:0006725 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0008409 GO:0009056 GO:0009057 GO:0009266 GO:0009408 GO:0009628 GO:0009653 GO:0009826 GO:0009888 GO:0009892 GO:0009987 GO:0010087 GO:0010286 GO:0010468 GO:0010494 GO:0010586 GO:0010587 GO:0010605 GO:0010629 GO:0016043 GO:0016049 GO:0016070 GO:0016071 GO:0016787 GO:0016788 GO:0016796 GO:0016896 GO:0019222 GO:0019439 GO:0031086 GO:0031087 GO:0032502 GO:0032989 GO:0032991 GO:0033554 GO:0034605 GO:0034641 GO:0034655 GO:0034660 GO:0034661 GO:0035770 GO:0036464 GO:0040007 GO:0040029 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046700 GO:0048519 GO:0048589 GO:0048856 GO:0048869 GO:0050789 GO:0050896 GO:0051301 GO:0051716 GO:0060255 GO:0060560 GO:0065007 GO:0070370 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0090501 GO:0090503 GO:0097159 GO:0140098 GO:1901360 GO:1901361 GO:1901363 GO:1901575 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03008 ko03018 ko04016 map03008 map03018 map04016

Pfam Domains

Protein Families

XRN_N zf-CCHC

Protein Analysis

986

Amino Acids

112.96

Weight (kDa)

6.33

Isoelectric Point (pI)

45.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
XRN_N	PF03159	1 - 254	1.6e-98	XRN 5'-3' exonuclease N-terminus
XRN_M	PF17846	321 - 422	1.1e-42	Xrn1 helical domain
XRN_M	PF17846	432 - 718	6.7e-116	Xrn1 helical domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007016)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G54490 AT1G54490
fragaria_vesca	FvH4_6g03690 FvH4_6g03690
malus_domestica	MD04G1219200.v1.1 MD12G1236200.v1.1
prunus_persica	Prupe.6G338500_v2.0.a1 Prupe.6G338500_v2.0.a1
pyrus_communis	pycom04g19450 pycom12g21730
rosa_chinensis	RchiOBHm_Chr3g0452231
rosa_laevigata	RLG00000025615
rosa_multiflora	Rmu_sc0037132.1_g000001 Rmu_sc0041263.1_g000001
rosa_roxburghii	Rroxscaffold_164G00435930 Rroxscaffold_6G00429350
rosa_rugosa	Rorug02G0639400
rosa_samantha	Rh3AG041300 Rh3BG043000 Rh3BG043200 Rh3CG041400 Rh3CG041600 Rh3DG042300 Rh3DG042500
rosa_wichuraiana	Rw3G003160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	2881
AasI	GACNNNNNNGTC	1 cut(s)	813
AatII	GACGTC	1 cut(s)	117
Acc36I	ACCTGC	2 cut(s)	217, 2881
Acc65I	GGTACC	1 cut(s)	39
AccB1I	GGYRCC	2 cut(s)	39, 2828
AccB7I	CCANNNNNTGG	2 cut(s)	2315, 2444
AccBSI	CCGCTC	1 cut(s)	46
AccI	GTMKAC	2 cut(s)	57, 572
AccII	CGCG	1 cut(s)	14
AclI	AACGTT	1 cut(s)	600
AclWI	GGATC	5 cut(s)	42, 662, 1643, 2334, 2819
AcoI	YGGCCR	1 cut(s)	202
AcsI	RAATTY	9 cut(s)	416, 1094, 1191, 1212, 1636, 2449, 2692, 2734, 2822
AcuI	CTGAAG	2 cut(s)	414, 450
AcyI	GRCGYC	3 cut(s)	6, 114, 1868
AfaI	GTAC	4 cut(s)	41, 146, 1886, 2603
AfeI	AGCGCT	1 cut(s)	1712
AflIII	ACRYGT	1 cut(s)	2918
AgsI	TTSAA	7 cut(s)	238, 527, 550, 1199, 1364, 1388, 1787
AjiI	CACGTC	2 cut(s)	61, 2921
AjnI	CCWGG	8 cut(s)	77, 487, 604, 775, 2227, 2657, 2680, 2952
AjuI	GAANNNNNNNTTGG	2 cut(s)	1727, 1759
AleI	CACNNNNGTG	1 cut(s)	275
AloI	GAACNNNNNNTCC	2 cut(s)	2647, 2679
Alw21I	GWGCWC	5 cut(s)	513, 621, 1188, 1618, 2491
Alw26I	GTCTC	4 cut(s)	97, 121, 1237, 2667
AlwI	GGATC	5 cut(s)	42, 662, 1643, 2334, 2819
Ama87I	CYCGRG	2 cut(s)	118, 2108
Aor51HI	AGCGCT	1 cut(s)	1712
AoxI	GGCC	6 cut(s)	122, 202, 2074, 2216, 2402, 2480
ApeKI	GCWGC	6 cut(s)	365, 824, 1601, 2081, 2261, 2887
ApoI	RAATTY	9 cut(s)	416, 1094, 1191, 1212, 1636, 2449, 2692, 2734, 2822
AseI	ATTAAT	1 cut(s)	1065
Asp700I	GAANNNNTTC	1 cut(s)	1967
Asp718I	GGTACC	1 cut(s)	39
AspLEI	GCGC	4 cut(s)	282, 1713, 2677, 2786
AspS9I	GGNCC	6 cut(s)	85, 2075, 2189, 2402, 2481, 2876
AsuC2I	CCSGG	1 cut(s)	1329
AsuHPI	GGTGA	4 cut(s)	775, 1142, 2525, 2905
AvaI	CYCGRG	2 cut(s)	118, 2108
AvaII	GGWCC	3 cut(s)	85, 2189, 2876
AxyI	CCTNAGG	2 cut(s)	2463, 2928
BaeI	ACNNNNGTAYC	2 cut(s)	462, 495
BanI	GGYRCC	2 cut(s)	39, 2828
BanII	GRGCYC	2 cut(s)	1210, 2491
BbsI	GAAGAC	1 cut(s)	2187
Bbv12I	GWGCWC	5 cut(s)	513, 621, 1188, 1618, 2491
BbvCI	CCTCAGC	1 cut(s)	381
BbvI	GCAGC	6 cut(s)	352, 836, 1588, 2093, 2273, 2899
BccI	CCATC	7 cut(s)	305, 418, 842, 1660, 1687, 2317, 2413
BceAI	ACGGC	4 cut(s)	109, 151, 187, 217
BcgI	CGANNNNNNTGC	4 cut(s)	79, 113, 332, 366
BciT130I	CCWGG	8 cut(s)	79, 489, 606, 777, 2229, 2659, 2682, 2954
BciVI	GTATCC	2 cut(s)	2693, 2735
BclI	TGATCA	3 cut(s)	259, 1576, 2118
BcnI	CCSGG	1 cut(s)	1329
BcoDI	GTCTC	4 cut(s)	97, 121, 1237, 2667
BfaI	CTAG	4 cut(s)	1526, 2301, 2478, 2628
BfmI	CTRYAG	2 cut(s)	2079, 2667
BfoI	RGCGCY	2 cut(s)	1714, 2787
BfuAI	ACCTGC	2 cut(s)	217, 2881
BfuI	GTATCC	2 cut(s)	2693, 2735
BglII	AGATCT	2 cut(s)	706, 1522
BisI	GCNGC	8 cut(s)	366, 378, 825, 855, 1602, 2082, 2262, 2888
BlsI	GCNGC	8 cut(s)	367, 379, 826, 856, 1603, 2083, 2263, 2889
Bme1390I	CCNGG	9 cut(s)	79, 489, 606, 777, 1329, 2229, 2659, 2682, 2954
Bme18I	GGWCC	3 cut(s)	85, 2189, 2876
BmeT110I	CYCGRG	2 cut(s)	118, 2108
BmgBI	CACGTC	2 cut(s)	61, 2921
BmgT120I	GGNCC	6 cut(s)	85, 2075, 2189, 2402, 2481, 2876
BmiI	GGNNCC	7 cut(s)	41, 87, 1284, 1326, 1591, 2191, 2830
BmrFI	CCNGG	9 cut(s)	79, 489, 606, 777, 1329, 2229, 2659, 2682, 2954
BmrI	ACTGGG	1 cut(s)	2628
BmsI	GCATC	8 cut(s)	364, 583, 691, 1114, 1818, 2478, 2676, 2863
BmuI	ACTGGG	1 cut(s)	2628
BoxI	GACNNNNGTC	1 cut(s)	2187
BpiI	GAAGAC	1 cut(s)	2187
BpmI	CTGGAG	4 cut(s)	471, 852, 1269, 2250
Bpu10I	CCTNAGC	1 cut(s)	381
BpuMI	CCSGG	1 cut(s)	1329
BsaBI	GATNNNNATC	1 cut(s)	705
BsaHI	GRCGYC	3 cut(s)	6, 114, 1868
BsaI	GGTCTC	2 cut(s)	97, 2667
BsaJI	CCNNGG	6 cut(s)	77, 78, 559, 1456, 2109, 2681
BsaWI	WCCGGW	1 cut(s)	2864
BsaXI	ACNNNNNCTCC	4 cut(s)	2647, 2677, 2908, 2938
Bse118I	RCCGGY	1 cut(s)	1279
Bse1I	ACTGG	5 cut(s)	869, 1165, 1286, 2378, 2623
Bse21I	CCTNAGG	2 cut(s)	2463, 2928
Bse3DI	GCAATG	3 cut(s)	1021, 1481, 1728
Bse8I	GATNNNNATC	1 cut(s)	705
BseBI	CCWGG	8 cut(s)	79, 489, 606, 777, 2229, 2659, 2682, 2954
BseDI	CCNNGG	6 cut(s)	77, 78, 559, 1456, 2109, 2681
BseGI	GGATG	9 cut(s)	181, 193, 706, 988, 1833, 1858, 2309, 2628, 2691
BseJI	GATNNNNATC	1 cut(s)	705
BseMI	GCAATG	3 cut(s)	1021, 1481, 1728
BseMII	CTCAG	7 cut(s)	372, 528, 1344, 1784, 1974, 2477, 2942
BseNI	ACTGG	5 cut(s)	869, 1165, 1286, 2378, 2623
BseRI	GAGGAG	2 cut(s)	1394, 2916
BseX3I	CGGCCG	1 cut(s)	202
BseXI	GCAGC	6 cut(s)	352, 836, 1588, 2093, 2273, 2899
BseYI	CCCAGC	1 cut(s)	2399
BsgI	GTGCAG	1 cut(s)	2792
Bsh1236I	CGCG	1 cut(s)	14
Bsh1285I	CGRYCG	4 cut(s)	54, 205, 559, 644
BshFI	GGCC	6 cut(s)	124, 204, 2076, 2218, 2404, 2482
BshNI	GGYRCC	2 cut(s)	39, 2828
BsiEI	CGRYCG	4 cut(s)	54, 205, 559, 644
BsiHKAI	GWGCWC	5 cut(s)	513, 621, 1188, 1618, 2491
BsiHKCI	CYCGRG	2 cut(s)	118, 2108
BsiSI	CCGG	3 cut(s)	1280, 1328, 2865
BslFI	GGGAC	3 cut(s)	445, 1893, 2175
BsmAI	GTCTC	4 cut(s)	97, 121, 1237, 2667
BsmBI	CGTCTC	1 cut(s)	121
BsmFI	GGGAC	3 cut(s)	445, 1893, 2175
BsnI	GGCC	6 cut(s)	124, 204, 2076, 2218, 2404, 2482
Bso31I	GGTCTC	2 cut(s)	97, 2667
BsoBI	CYCGRG	2 cut(s)	118, 2108
Bsp1286I	GDGCHC	6 cut(s)	513, 621, 1188, 1210, 1618, 2491
BspANI	GGCC	6 cut(s)	124, 204, 2076, 2218, 2404, 2482
BspCNI	CTCAG	7 cut(s)	373, 527, 1345, 1783, 1975, 2476, 2941
BspFNI	CGCG	1 cut(s)	14
BspLI	GGNNCC	7 cut(s)	41, 87, 1284, 1326, 1591, 2191, 2830
BspMAI	CTGCAG	1 cut(s)	2083
BspMI	ACCTGC	2 cut(s)	217, 2881
BspPI	GGATC	5 cut(s)	42, 662, 1643, 2334, 2819
BspQI	GCTCTTC	3 cut(s)	1266, 1623, 2793
BspT107I	GGYRCC	2 cut(s)	39, 2828
BspTNI	GGTCTC	2 cut(s)	97, 2667
BsrBI	CCGCTC	1 cut(s)	46
BsrDI	GCAATG	3 cut(s)	1021, 1481, 1728
BsrFI	RCCGGY	1 cut(s)	1279
BsrI	ACTGG	5 cut(s)	869, 1165, 1286, 2378, 2623
BssAI	RCCGGY	1 cut(s)	1279
BssECI	CCNNGG	6 cut(s)	77, 78, 559, 1456, 2109, 2681
BssNI	GRCGYC	3 cut(s)	6, 114, 1868
BssT1I	CCWWGG	1 cut(s)	1456
Bst2UI	CCWGG	8 cut(s)	79, 489, 606, 777, 2229, 2659, 2682, 2954
Bst4CI	ACNGT	4 cut(s)	560, 2045, 2550, 2601
BstACI	GRCGYC	3 cut(s)	6, 114, 1868
BstAPI	GCANNNNNTGC	3 cut(s)	374, 2728, 2770
BstC8I	GCNNGC	8 cut(s)	26, 30, 98, 720, 1206, 1221, 1709, 1767
BstDEI	CTNAG	7 cut(s)	381, 514, 1353, 1770, 1983, 2463, 2928
BstDSI	CCRYGG	1 cut(s)	559
BstF5I	GGATG	9 cut(s)	181, 193, 706, 988, 1833, 1858, 2309, 2628, 2691
BstFNI	CGCG	1 cut(s)	14
BstH2I	RGCGCY	2 cut(s)	1714, 2787
BstHHI	GCGC	4 cut(s)	282, 1713, 2677, 2786
BstMAI	GTCTC	4 cut(s)	97, 121, 1237, 2667
BstMCI	CGRYCG	4 cut(s)	54, 205, 559, 644
BstMWI	GCNNNNNNNGC	7 cut(s)	326, 374, 383, 1505, 1837, 2728, 2770
BstNI	CCWGG	8 cut(s)	79, 489, 606, 777, 2229, 2659, 2682, 2954
BstPAI	GACNNNNGTC	1 cut(s)	2187
BstSCI	CCNGG	9 cut(s)	77, 487, 604, 775, 1327, 2227, 2657, 2680, 2952
BstSFI	CTRYAG	2 cut(s)	2079, 2667
BstUI	CGCG	1 cut(s)	14
BstV1I	GCAGC	6 cut(s)	352, 836, 1588, 2093, 2273, 2899
BstV2I	GAAGAC	1 cut(s)	2187
BstX2I	RGATCY	2 cut(s)	706, 1522
BstYI	RGATCY	2 cut(s)	706, 1522
BstZI	CGGCCG	1 cut(s)	202
Bsu36I	CCTNAGG	2 cut(s)	2463, 2928
BsuI	GTATCC	2 cut(s)	2693, 2735
BsuRI	GGCC	6 cut(s)	124, 204, 2076, 2218, 2404, 2482
BtgI	CCRYGG	1 cut(s)	559
BtgZI	GCGATG	1 cut(s)	2252
BtrI	CACGTC	2 cut(s)	61, 2921
BtsCI	GGATG	9 cut(s)	181, 193, 706, 988, 1833, 1858, 2309, 2628, 2691
BtsIMutI	CAGTG	2 cut(s)	1119, 1293
BveI	ACCTGC	2 cut(s)	217, 2881
Cac8I	GCNNGC	8 cut(s)	26, 30, 98, 720, 1206, 1221, 1709, 1767
CfoI	GCGC	4 cut(s)	282, 1713, 2677, 2786
Cfr10I	RCCGGY	1 cut(s)	1279
Cfr13I	GGNCC	6 cut(s)	85, 2075, 2189, 2402, 2481, 2876
CseI	GACGC	3 cut(s)	1497, 1857, 2205
CsiI	ACCWGGT	1 cut(s)	2657
Csp6I	GTAC	4 cut(s)	40, 145, 1885, 2602
CspCI	CAANNNNNGTGG	2 cut(s)	541, 576
CviQI	GTAC	4 cut(s)	40, 145, 1885, 2602
DdeI	CTNAG	7 cut(s)	381, 514, 1353, 1770, 1983, 2463, 2928
DraI	TTTAAA	2 cut(s)	544, 1567
DrdI	GACNNNNNNGTC	1 cut(s)	813
DseDI	GACNNNNNNGTC	1 cut(s)	813
EaeI	YGGCCR	1 cut(s)	202
EagI	CGGCCG	1 cut(s)	202
EciI	GGCGGA	3 cut(s)	47, 401, 2889
Ecl136II	GAGCTC	1 cut(s)	2489
EclXI	CGGCCG	1 cut(s)	202
Eco130I	CCWWGG	1 cut(s)	1456
Eco24I	GRGCYC	2 cut(s)	1210, 2491
Eco31I	GGTCTC	2 cut(s)	97, 2667
Eco32I	GATATC	1 cut(s)	2152
Eco47I	GGWCC	3 cut(s)	85, 2189, 2876
Eco47III	AGCGCT	1 cut(s)	1712
Eco52I	CGGCCG	1 cut(s)	202
Eco53kI	GAGCTC	1 cut(s)	2489
Eco57I	CTGAAG	2 cut(s)	414, 450
Eco81I	CCTNAGG	2 cut(s)	2463, 2928
Eco88I	CYCGRG	2 cut(s)	118, 2108
EcoICRI	GAGCTC	1 cut(s)	2489
EcoO109I	RGGNCCY	1 cut(s)	85
EcoRI	GAATTC	2 cut(s)	1212, 2822
EcoRII	CCWGG	8 cut(s)	77, 487, 604, 775, 2227, 2657, 2680, 2952
EcoRV	GATATC	1 cut(s)	2152
EcoT14I	CCWWGG	1 cut(s)	1456
EcoT38I	GRGCYC	2 cut(s)	1210, 2491
ErhI	CCWWGG	1 cut(s)	1456
Esp3I	CGTCTC	1 cut(s)	121
FalI	AAGNNNNNCTT	4 cut(s)	1249, 1281, 2335, 2367
FaqI	GGGAC	3 cut(s)	445, 1893, 2175
FauI	CCCGC	4 cut(s)	19, 51, 1120, 1197
FauNDI	CATATG	3 cut(s)	1032, 2068, 2881
FbaI	TGATCA	3 cut(s)	259, 1576, 2118
FblI	GTMKAC	2 cut(s)	57, 572
Fnu4HI	GCNGC	8 cut(s)	366, 378, 825, 855, 1602, 2082, 2262, 2888
FokI	GGATG	9 cut(s)	168, 180, 713, 995, 1840, 1845, 2296, 2635, 2698
FriOI	GRGCYC	2 cut(s)	1210, 2491
Fsp4HI	GCNGC	8 cut(s)	366, 378, 825, 855, 1602, 2082, 2262, 2888
FspBI	CTAG	4 cut(s)	1526, 2301, 2478, 2628
GlaI	GCGC	4 cut(s)	281, 1712, 2676, 2785
GluI	GCNGC	8 cut(s)	366, 378, 825, 855, 1602, 2082, 2262, 2888
GsaI	CCCAGC	1 cut(s)	2403
GsuI	CTGGAG	4 cut(s)	471, 852, 1269, 2250
HaeII	RGCGCY	2 cut(s)	1714, 2787
HaeIII	GGCC	6 cut(s)	124, 204, 2076, 2218, 2404, 2482
HapII	CCGG	3 cut(s)	1280, 1328, 2865
HgaI	GACGC	3 cut(s)	1497, 1857, 2205
HhaI	GCGC	4 cut(s)	282, 1713, 2677, 2786
Hin1I	GRCGYC	3 cut(s)	6, 114, 1868
Hin6I	GCGC	4 cut(s)	280, 1711, 2675, 2784
HinP1I	GCGC	4 cut(s)	280, 1711, 2675, 2784
HincII	GTYRAC	3 cut(s)	58, 782, 2383
HindII	GTYRAC	3 cut(s)	58, 782, 2383
HindIII	AAGCTT	2 cut(s)	290, 1781
HinfI	GANTC	3 cut(s)	337, 1906, 1968
HpaII	CCGG	3 cut(s)	1280, 1328, 2865
HphI	GGTGA	4 cut(s)	775, 1142, 2525, 2905
Hpy166II	GTNNAC	8 cut(s)	58, 573, 742, 782, 806, 874, 1306, 2383
Hpy8I	GTNNAC	8 cut(s)	58, 573, 742, 782, 806, 874, 1306, 2383
Hpy99I	CGWCG	7 cut(s)	59, 62, 116, 203, 357, 1873, 2199
HpyAV	CCTTC	4 cut(s)	1418, 1863, 2022, 2636
HpyCH4III	ACNGT	4 cut(s)	560, 2045, 2550, 2601
HpyCH4IV	ACGT	7 cut(s)	60, 114, 231, 355, 600, 2004, 2920
HpyCH4V	TGCA	9 cut(s)	368, 704, 1061, 1078, 1604, 2023, 2081, 2509, 2773
HpyF10VI	GCNNNNNNNGC	7 cut(s)	326, 374, 383, 1505, 1837, 2728, 2770
HpyF3I	CTNAG	7 cut(s)	381, 514, 1353, 1770, 1983, 2463, 2928
HpySE526I	ACGT	7 cut(s)	60, 114, 231, 355, 600, 2004, 2920
Hsp92I	GRCGYC	3 cut(s)	6, 114, 1868
HspAI	GCGC	4 cut(s)	280, 1711, 2675, 2784
KpnI	GGTACC	1 cut(s)	43
Ksp22I	TGATCA	3 cut(s)	259, 1576, 2118
LguI	GCTCTTC	3 cut(s)	1266, 1623, 2793
LmnI	GCTCC	5 cut(s)	1288, 1324, 1504, 2231, 2494
Lsp1109I	GCAGC	6 cut(s)	352, 836, 1588, 2093, 2273, 2899
LweI	GCATC	8 cut(s)	364, 583, 691, 1114, 1818, 2478, 2676, 2863
MabI	ACCWGGT	1 cut(s)	2657
MaeI	CTAG	4 cut(s)	1526, 2301, 2478, 2628
MaeII	ACGT	7 cut(s)	60, 114, 231, 355, 600, 2004, 2920
MaeIII	GTNAC	3 cut(s)	2045, 2062, 2513
MbiI	CCGCTC	1 cut(s)	46
MfeI	CAATTG	1 cut(s)	2235
MflI	RGATCY	2 cut(s)	706, 1522
MhlI	GDGCHC	6 cut(s)	513, 621, 1188, 1210, 1618, 2491
MlyI	GAGTC	1 cut(s)	1915
MmeI	TCCRAC	2 cut(s)	1515, 1851
MroXI	GAANNNNTTC	1 cut(s)	1967
MslI	CAYNNNNRTG	4 cut(s)	275, 905, 1474, 1953
MspA1I	CMGCKG	4 cut(s)	24, 827, 1601, 2399
MspI	CCGG	3 cut(s)	1280, 1328, 2865
MspR9I	CCNGG	9 cut(s)	79, 489, 606, 777, 1329, 2229, 2659, 2682, 2954
MunI	CAATTG	1 cut(s)	2235
MvaI	CCWGG	8 cut(s)	79, 489, 606, 777, 2229, 2659, 2682, 2954
MvnI	CGCG	1 cut(s)	14
MwoI	GCNNNNNNNGC	7 cut(s)	326, 374, 383, 1505, 1837, 2728, 2770
NciI	CCSGG	1 cut(s)	1329
NdeI	CATATG	3 cut(s)	1032, 2068, 2881
NlaIV	GGNNCC	7 cut(s)	41, 87, 1284, 1326, 1591, 2191, 2830
NmeAIII	GCCGAG	2 cut(s)	126, 658
NmuCI	GTSAC	1 cut(s)	2513
OliI	CACNNNNGTG	1 cut(s)	275
PaeR7I	CTCGAG	1 cut(s)	118
PaqCI	CACCTGC	1 cut(s)	2881
PasI	CCCWGGG	1 cut(s)	78
PciSI	GCTCTTC	3 cut(s)	1266, 1623, 2793
PcsI	WCGNNNNNNNCGW	2 cut(s)	352, 606
PdmI	GAANNNNTTC	1 cut(s)	1967
PfeI	GAWTC	2 cut(s)	337, 1968
PflMI	CCANNNNNTGG	2 cut(s)	2315, 2444
PkrI	GCNGC	8 cut(s)	367, 379, 826, 856, 1603, 2083, 2263, 2889
Ple19I	CGATCG	2 cut(s)	54, 644
PleI	GAGTC	1 cut(s)	1914
PpsI	GAGTC	1 cut(s)	1914
PpuMI	RGGWCCY	1 cut(s)	85
PshAI	GACNNNNGTC	1 cut(s)	2187
PshBI	ATTAAT	1 cut(s)	1065
Psp124BI	GAGCTC	1 cut(s)	2491
Psp1406I	AACGTT	1 cut(s)	600
Psp5II	RGGWCCY	1 cut(s)	85
Psp6I	CCWGG	8 cut(s)	77, 487, 604, 775, 2227, 2657, 2680, 2952
PspFI	CCCAGC	1 cut(s)	2399
PspGI	CCWGG	8 cut(s)	77, 487, 604, 775, 2227, 2657, 2680, 2952
PspN4I	GGNNCC	7 cut(s)	41, 87, 1284, 1326, 1591, 2191, 2830
PspPI	GGNCC	6 cut(s)	85, 2075, 2189, 2402, 2481, 2876
PspPPI	RGGWCCY	1 cut(s)	85
PstI	CTGCAG	1 cut(s)	2083
PsuI	RGATCY	2 cut(s)	706, 1522
PvuI	CGATCG	2 cut(s)	54, 644
PvuII	CAGCTG	3 cut(s)	827, 1601, 2399
RsaI	GTAC	4 cut(s)	41, 146, 1886, 2603
RsaNI	GTAC	4 cut(s)	40, 145, 1885, 2602
RseI	CAYNNNNRTG	4 cut(s)	275, 905, 1474, 1953
SacI	GAGCTC	1 cut(s)	2491
SalI	GTCGAC	1 cut(s)	56
SapI	GCTCTTC	3 cut(s)	1266, 1623, 2793
SatI	GCNGC	8 cut(s)	366, 378, 825, 855, 1602, 2082, 2262, 2888
Sau96I	GGNCC	6 cut(s)	85, 2075, 2189, 2402, 2481, 2876
SchI	GAGTC	1 cut(s)	1915
ScrFI	CCNGG	9 cut(s)	79, 489, 606, 777, 1329, 2229, 2659, 2682, 2954
SduI	GDGCHC	6 cut(s)	513, 621, 1188, 1210, 1618, 2491
SexAI	ACCWGGT	1 cut(s)	2657
SfaNI	GCATC	8 cut(s)	364, 583, 691, 1114, 1818, 2478, 2676, 2863
SfcI	CTRYAG	2 cut(s)	2079, 2667
Sfr274I	CTCGAG	1 cut(s)	118
SgrDI	CGTCGACG	1 cut(s)	56
SinI	GGWCC	3 cut(s)	85, 2189, 2876
SlaI	CTCGAG	1 cut(s)	118
SmiI	ATTTAAAT	1 cut(s)	544
SmiMI	CAYNNNNRTG	4 cut(s)	275, 905, 1474, 1953
SmlI	CTYRAG	1 cut(s)	118
SmoI	CTYRAG	1 cut(s)	118
SspI	AATATT	4 cut(s)	246, 530, 753, 920
SspMI	CTAG	4 cut(s)	1526, 2301, 2478, 2628
SstI	GAGCTC	1 cut(s)	2491
StyD4I	CCNGG	9 cut(s)	77, 487, 604, 775, 1327, 2227, 2657, 2680, 2952
StyI	CCWWGG	1 cut(s)	1456
SwaI	ATTTAAAT	1 cut(s)	544
TaaI	ACNGT	4 cut(s)	560, 2045, 2550, 2601
TaiI	ACGT	7 cut(s)	63, 117, 234, 358, 603, 2007, 2923
TaqI	TCGA	8 cut(s)	50, 57, 111, 119, 162, 352, 1210, 1816
TatI	WGTACW	1 cut(s)	1884
TauI	GCSGC	2 cut(s)	380, 857
TfiI	GAWTC	2 cut(s)	337, 1968
TscAI	CASTG	2 cut(s)	1126, 1293
TseFI	GTSAC	1 cut(s)	2513
TseI	GCWGC	6 cut(s)	365, 824, 1601, 2081, 2261, 2887
Tsp45I	GTSAC	1 cut(s)	2513
TspGWI	ACGGA	3 cut(s)	1814, 2162, 2417
TspRI	CASTG	2 cut(s)	1126, 1293
Van91I	CCANNNNNTGG	2 cut(s)	2315, 2444
VpaK11BI	GGWCC	3 cut(s)	85, 2189, 2876
VspI	ATTAAT	1 cut(s)	1065
XapI	RAATTY	9 cut(s)	416, 1094, 1191, 1212, 1636, 2449, 2692, 2734, 2822
XbaI	TCTAGA	1 cut(s)	1525
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2805
XhoI	CTCGAG	1 cut(s)	118
XmiI	GTMKAC	2 cut(s)	57, 572
XmnI	GAANNNNTTC	1 cut(s)	1967
XspI	CTAG	4 cut(s)	1526, 2301, 2478, 2628
ZraI	GACGTC	1 cut(s)	115

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.