Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0007016

Physical Location & Seq

Genomic Coordinates Forward (+)

29344718 .. 29354972

Gene Structure 10255 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G338500.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2919 bp

ATGGGCGTTCCTGCGTTTTACCGCTGGCTAGCGGATCGGTACCCACTGTCCATCGTCGACGTGGTGGAGGAACAGCCTAGGGAGGGCCCCAATGGCGTGCCCCTACCGATCGACGTTTCCAGACCAAACCCTAATGGCTATGAGTTCGACAACTTGTACCTCGACATGAACGGCATTATACATCCCTGTTTTCATCCCGATGGCAAGCCTGCTCCTGCTACCTATGATGATGTATTCAGTTCAATATTTGATTACATTGACCATCTATTCTCATTGGTTCGCCCAAGAAAGCTTCTTTTTATGGCAATTGACGGGGTTGCTCCAAGAGCTAAAATGAATCAGCAACGTTCTCGACGTTTCAGAGCTGCAAAAGATGCGGCTGATGCGGAAGCCGAAGAGGAAAGACTGAAGAAAGAATTTGAGATGGAGGGGACATATTTGATTCCTAAAGAGAAGCCTGAAACATCAGATTCAAATGTTATTACTCCGGGCACTCAATTTATGGCAGTGCTTTCGGTGGCACTTCAATATTTCATACAAAGTAGGTTAAACCACAACCCTGGTTGGCGATCTACCAAGGTTATTCTGTCTGATTCAAATGTTTCTGGCGAGGGAGAGCACAAAATAATGTCATACATACGATTGCAGCGCAACCTTCTTGGTTTTGATCCGAACACTCGGCATTGTCTCTATGGTTTGGATGCAGATCTTATTATGCTGGCTTTAGCTACACATGAGGTTCACTTCTCAATATTAAGAGAGGTGATTACTCTTCCAGGTCAACAAGAAAAATGTTTTCTTTGTGGGCAAGTTGGTCATCTGGCAGCTGAGTGTCGTGGTAAACTTGATGATTATGGAAATGTTGTAGATGAAACCCCAATTCACAAGAAGAAATATCAGTTCCTCAACATATGGGTATTGCGCGAATACTTGCAATATGAGCTGGAGATTCCTAATCCTCCTTTTCAGATTAACTTTGAAAGGATAGTGGATGATTTTGTGTTTATGTGTTTTTTTGTTGGCAATGATTTTCTTCCACATATGCCGACATTGGAGATAAGGGAGGGTGCTATTAATTTATTGATGCATATTTATAGAAGGGAGTTTACTGCTATGGGTGGTTATCTTACTGATGCGGGTGAGGTATTGTTAGACAGAGTAGAGCATTTTATTCAATCTGTTGCTGTTTTTGAACGCCAAATCTTTCAAAAGCGGGTTCGGATTCAGCAGGCTATAGAGAATAATGAAGAGATGAGAAATAGATCTAGAAGAGAATCTTCTGCAGAGCTACCCGCTCCGGTGGTCGACAAGGTTAAATTGGGGGAGCCCGGATATACAGAGAGGTACTATGCTGAGAAATTTCAAGTAACAAAGCCCGAGGAGATTGATAATGTTAAAAAGGACTTAGTTTTAAAATATGTAGAAGGCTTATGTTGGGTCTGCCGATATTACTACCAAGGGGTCTGCTCATGGCAATGGTACTACCCGTATCATTATGCCCCTTTTGCTTCTGATCTAAAAGATTTAGATGAATTGGAAATAACATTTTTCTTGGGAGAGCCATTTAAACCCTTTGATCAGCTCATGGGAACCTTACCGGCTGCAAGCTCTAGTGCTCTTCCGGAAAAATACAGAAACTTGATGACTGATCCATCATCACCAATCTATAATTTCTATCCTTCTGATTTTGAGATTGACATGAATGGCAAGCGCTTTGCATGGCAGGGTGTTGCCAAATTGCCATTCATTGATGAGAAGAAATTGCTTGCTCAGACAAGGAGGCTTGAAAGCACTTTAACGGAGGAAGAGCAGGCTCGGAATAGTGTGATGCTTGATTTGCTTTATGTCTATCCATCTCATCCTTTGGCGGCAGAAATGAAGTTGTACTACCAACTATATTATCAGTCAGCCCCTCAGGAAAGATTTGTATGGCCGATAGACACAATTGCCAGTGGTGGAATGAATGGATACCTTTGGTTATCTGAGAGAAATGGTGTTCGATGCGTAATCCCTTCCCCTGTTCGTGGTTATCCGAACATTGATTATAACCAAGTCTTAAATGTTACCTATCTTAATCCCGCGGCTCATAAACACATCCCAGAACCTCCCCAGGGTGTGGTCATGCCCAAAAAGGTTGTAAAACCTATGGACATCAAACCAGCCCCTGCATTATGGCATGAAGACAATGGTCGACGCCAGCAAGGCAGAGAGAGGCCACAAGTACCTGGAGCAATTGCTGGACCTATGTTGGGAGAAGCAGCTCATCGACTTGTCAAGAACACACTTAATATTAGATCTAATAATTCAGCTTCGGGATTTTGGGACCAACAACCGCTACGTAATTTTCCAGGAAACTATCCAGTCAATAGACCAAGACCAGCTGGGCCCTCTGGGTATGAAAAGGGCTTCCGTGAAGAAGCAAAGTATGGAAACTCGTTCACTCCTCAGGGCATCATGGCTAGGCCTAGATTTCCCTCCTCAAATGGTATGCAGGGTGACAGACAGAGTTTTAGAGCTCAAGAAAGAGTCCAATATCAAGAACAGAGTTTTAGGACACAAGAAAGAGTACAATATCAAGAACAGTACCACAGCTTGAGAACTGGGATGTCTGGTTTAACAATGGAAGAAAGTGTGAGAACCAGGTCTCCTGCCGGGCAACCAGGGATGCCAAATTCAGGGTACTCCACGAACCCACAACACCAGTTTGCGCAGGATGCTCTTCCTTCACCGCCTCCCAAGTGGATTAACAAAGAATCAACTGCAAACGGTGGGTTATATAATAGGCAACAGGAAACTGGATTTGGTGGAGCATATGAGCCGCAGCCAGTCAAGAAGGTGTATCAGGTTAAGACTCGTGCTCCCCAGGATATGTCGGATGCTGGAGACCAGACTGGGAGTGATTCATCTGGATTTGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000291 GO:0000902 GO:0000932 GO:0000956 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003824 GO:0004518 GO:0004527 GO:0004532 GO:0004534 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005844 GO:0006139 GO:0006401 GO:0006402 GO:0006725 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0008409 GO:0009056 GO:0009057 GO:0009266 GO:0009408 GO:0009628 GO:0009653 GO:0009826 GO:0009888 GO:0009892 GO:0009987 GO:0010087 GO:0010286 GO:0010468 GO:0010494 GO:0010586 GO:0010587 GO:0010605 GO:0010629 GO:0016043 GO:0016049 GO:0016070 GO:0016071 GO:0016787 GO:0016788 GO:0016796 GO:0016896 GO:0019222 GO:0019439 GO:0031086 GO:0031087 GO:0032502 GO:0032989 GO:0032991 GO:0033554 GO:0034605 GO:0034641 GO:0034655 GO:0034660 GO:0034661 GO:0035770 GO:0036464 GO:0040007 GO:0040029 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046700 GO:0048519 GO:0048589 GO:0048856 GO:0048869 GO:0050789 GO:0050896 GO:0051301 GO:0051716 GO:0060255 GO:0060560 GO:0065007 GO:0070370 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0090501 GO:0090503 GO:0097159 GO:0140098 GO:1901360 GO:1901361 GO:1901363 GO:1901575 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03008 ko03018 ko04016 map03008 map03018 map04016

Pfam Domains

Protein Families

XRN_N zf-CCHC

Protein Analysis

973

Amino Acids

111.27

Weight (kDa)

6.15

Isoelectric Point (pI)

52.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007016)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G54490 AT1G54490
fragaria_vesca	FvH4_6g03690 FvH4_6g03690
malus_domestica	MD04G1219200.v1.1 MD12G1236200.v1.1
prunus_persica	Prupe.6G338500_v2.0.a1 Prupe.6G338500_v2.0.a1
pyrus_communis	pycom04g19450 pycom12g21730
rosa_chinensis	RchiOBHm_Chr3g0452231
rosa_laevigata	RLG00000025615
rosa_multiflora	Rmu_sc0037132.1_g000001 Rmu_sc0041263.1_g000001
rosa_roxburghii	Rroxscaffold_164G00435930 Rroxscaffold_6G00429350
rosa_rugosa	Rorug02G0639400
rosa_samantha	Rh3AG041300 Rh3BG043000 Rh3BG043200 Rh3CG041400 Rh3CG041600 Rh3DG042300 Rh3DG042500
rosa_wichuraiana	Rw3G003160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	2046
Acc16I	TGCGCA	1 cut(s)	2709
Acc65I	GGTACC	1 cut(s)	39
AccB1I	GGYRCC	1 cut(s)	39
AccB7I	CCANNNNNTGG	1 cut(s)	2116
AccBSI	CCGCTC	1 cut(s)	1295
AccI	GTMKAC	3 cut(s)	57, 1305, 2191
AccII	CGCG	2 cut(s)	924, 2081
AccIII	TCCGGA	1 cut(s)	1621
AclI	AACGTT	1 cut(s)	346
AclWI	GGATC	3 cut(s)	42, 662, 1643
AcoI	YGGCCR	1 cut(s)	1931
AcsI	RAATTY	3 cut(s)	416, 1358, 2671
AcuI	CTGAAG	1 cut(s)	428
AcyI	GRCGYC	1 cut(s)	2194
AfaI	GTAC	9 cut(s)	41, 158, 1346, 1481, 1886, 2223, 2568, 2585, 2681
AfeI	AGCGCT	1 cut(s)	1712
AfiI	CCNNNNNNNGG	6 cut(s)	83, 2024, 2111, 2116, 2249, 2675
AjiI	CACGTC	1 cut(s)	61
AjnI	CCWGG	8 cut(s)	559, 775, 2109, 2224, 2347, 2639, 2659, 2862
AjuI	GAANNNNNNNTTGG	4 cut(s)	1727, 1759, 2784, 2816
AloI	GAACNNNNNNTCC	2 cut(s)	2629, 2661
Alw21I	GWGCWC	4 cut(s)	621, 1618, 2518, 2860
Alw26I	GTCTC	3 cut(s)	692, 2649, 2877
AlwI	GGATC	3 cut(s)	42, 662, 1643
AlwNI	CAGNNNCTG	1 cut(s)	2165
Ama87I	CYCGRG	1 cut(s)	1376
Aor13HI	TCCGGA	1 cut(s)	1621
Aor51HI	AGCGCT	1 cut(s)	1712
AoxI	GGCC	5 cut(s)	85, 1931, 2213, 2384, 2462
ApaI	GGGCCC	2 cut(s)	89, 2388
ApeKI	GCWGC	6 cut(s)	365, 646, 824, 1601, 2258, 2821
ApoI	RAATTY	3 cut(s)	416, 1358, 2671
AseI	ATTAAT	1 cut(s)	1074
Asp718I	GGTACC	1 cut(s)	39
AspA2I	CCTAGG	1 cut(s)	77
AspLEI	GCGC	4 cut(s)	651, 924, 1713, 2710
AspS9I	GGNCC	6 cut(s)	85, 86, 2240, 2323, 2384, 2385
AsuC2I	CCSGG	3 cut(s)	489, 1329, 2653
AsuHPI	GGTGA	5 cut(s)	775, 1151, 1650, 2507, 2718
AsuNHI	GCTAGC	1 cut(s)	28
AvaI	CYCGRG	1 cut(s)	1376
AvaII	GGWCC	2 cut(s)	2240, 2323
AvrII	CCTAGG	1 cut(s)	77
AxyI	CCTNAGG	2 cut(s)	1914, 2445
BaeGI	GKGCMC	4 cut(s)	89, 102, 494, 2388
BanI	GGYRCC	1 cut(s)	39
BanII	GRGCYC	4 cut(s)	89, 1329, 2388, 2518
BarI	GAAGNNNNNNTAC	4 cut(s)	1090, 1122, 1871, 1903
BauI	CACGAG	1 cut(s)	2853
BbsI	GAAGAC	1 cut(s)	2187
Bbv12I	GWGCWC	4 cut(s)	621, 1618, 2518, 2860
BbvI	GCAGC	6 cut(s)	352, 658, 836, 1588, 2270, 2833
BccI	CCATC	6 cut(s)	59, 194, 270, 418, 1660, 1861
BceAI	ACGGC	1 cut(s)	187
BcgI	CGANNNNNNTGC	4 cut(s)	332, 366, 495, 529
BciT130I	CCWGG	8 cut(s)	561, 777, 2111, 2226, 2349, 2641, 2661, 2864
BciVI	GTATCC	1 cut(s)	1961
BclI	TGATCA	1 cut(s)	1576
BcnI	CCSGG	3 cut(s)	489, 1329, 2653
BcoDI	GTCTC	3 cut(s)	692, 2649, 2877
BfaI	CTAG	6 cut(s)	29, 78, 1266, 1611, 2460, 2466
BfmI	CTRYAG	2 cut(s)	1233, 1281
BfoI	RGCGCY	1 cut(s)	1714
BfuI	GTATCC	1 cut(s)	1961
BglI	GCCNNNNNGGC	2 cut(s)	93, 2202
BglII	AGATCT	3 cut(s)	706, 1262, 2294
BlnI	CCTAGG	1 cut(s)	77
Bme18I	GGWCC	2 cut(s)	2240, 2323
BmeT110I	CYCGRG	1 cut(s)	1376
BmgBI	CACGTC	1 cut(s)	61
BmgT120I	GGNCC	6 cut(s)	85, 86, 2240, 2323, 2384, 2385
BmiI	GGNNCC	7 cut(s)	41, 87, 88, 1326, 1591, 2324, 2386
BmrI	ACTGGG	2 cut(s)	2610, 2901
BmtI	GCTAGC	1 cut(s)	32
BmuI	ACTGGG	2 cut(s)	2610, 2901
BoxI	GACNNNNGTC	1 cut(s)	2187
BpiI	GAAGAC	1 cut(s)	2187
BpmI	CTGGAG	3 cut(s)	965, 2247, 2901
BpuEI	CTTGAG	2 cut(s)	2502, 2614
BpuMI	CCSGG	3 cut(s)	489, 1329, 2653
BsaAI	YACGTR	1 cut(s)	2339
BsaBI	GATNNNNATC	1 cut(s)	705
BsaHI	GRCGYC	1 cut(s)	2194
BsaI	GGTCTC	2 cut(s)	2649, 2877
BsaWI	WCCGGW	2 cut(s)	1297, 1621
BsaXI	ACNNNNNCTCC	4 cut(s)	2629, 2659, 2842, 2872
Bsc4I	CCNNNNNNNGG	6 cut(s)	83, 2024, 2111, 2116, 2249, 2675
Bse118I	RCCGGY	1 cut(s)	1597
Bse1I	ACTGG	7 cut(s)	1950, 2360, 2605, 2701, 2800, 2825, 2896
Bse21I	CCTNAGG	2 cut(s)	1914, 2445
Bse3DI	GCAATG	2 cut(s)	1030, 1481
Bse8I	GATNNNNATC	1 cut(s)	705
BseAI	TCCGGA	1 cut(s)	1621
BseBI	CCWGG	8 cut(s)	561, 777, 2111, 2226, 2349, 2641, 2661, 2864
BseJI	GATNNNNATC	1 cut(s)	705
BseLI	CCNNNNNNNGG	6 cut(s)	83, 2024, 2111, 2116, 2249, 2675
BseMI	GCAATG	2 cut(s)	1030, 1481
BseMII	CTCAG	6 cut(s)	819, 1344, 1784, 1928, 1974, 2459
BseNI	ACTGG	7 cut(s)	1950, 2360, 2605, 2701, 2800, 2825, 2896
BseRI	GAGGAG	3 cut(s)	1394, 2433, 2467
BseSI	GKGCMC	4 cut(s)	89, 102, 494, 2388
BseXI	GCAGC	6 cut(s)	352, 658, 836, 1588, 2270, 2833
BseYI	CCCAGC	1 cut(s)	2381
Bsh1236I	CGCG	2 cut(s)	924, 2081
Bsh1285I	CGRYCG	1 cut(s)	111
BshFI	GGCC	5 cut(s)	87, 1933, 2215, 2386, 2464
BshNI	GGYRCC	1 cut(s)	39
BsiEI	CGRYCG	1 cut(s)	111
BsiHKAI	GWGCWC	4 cut(s)	621, 1618, 2518, 2860
BsiHKCI	CYCGRG	1 cut(s)	1376
BsiSI	CCGG	6 cut(s)	488, 1298, 1329, 1598, 1622, 2652
BslFI	GGGAC	2 cut(s)	445, 2336
BslI	CCNNNNNNNGG	6 cut(s)	83, 2024, 2111, 2116, 2249, 2675
BsmAI	GTCTC	3 cut(s)	692, 2649, 2877
BsmFI	GGGAC	2 cut(s)	445, 2336
BsnI	GGCC	5 cut(s)	87, 1933, 2215, 2386, 2464
Bso31I	GGTCTC	2 cut(s)	2649, 2877
BsoBI	CYCGRG	1 cut(s)	1376
Bsp120I	GGGCCC	2 cut(s)	85, 2384
Bsp1286I	GDGCHC	9 cut(s)	89, 102, 494, 621, 1329, 1618, 2388, 2518, 2860
Bsp13I	TCCGGA	1 cut(s)	1621
BspANI	GGCC	5 cut(s)	87, 1933, 2215, 2386, 2464
BspCNI	CTCAG	6 cut(s)	820, 1345, 1783, 1927, 1975, 2458
BspEI	TCCGGA	1 cut(s)	1621
BspFNI	CGCG	2 cut(s)	924, 2081
BspLI	GGNNCC	7 cut(s)	41, 87, 88, 1326, 1591, 2324, 2386
BspMAI	CTGCAG	1 cut(s)	1285
BspOI	GCTAGC	1 cut(s)	32
BspPI	GGATC	3 cut(s)	42, 662, 1643
BspQI	GCTCTTC	3 cut(s)	1623, 1800, 2724
BspT107I	GGYRCC	1 cut(s)	39
BspTNI	GGTCTC	2 cut(s)	2649, 2877
BsrBI	CCGCTC	1 cut(s)	1295
BsrDI	GCAATG	2 cut(s)	1030, 1481
BsrFI	RCCGGY	1 cut(s)	1597
BsrI	ACTGG	7 cut(s)	1950, 2360, 2605, 2701, 2800, 2825, 2896
BssAI	RCCGGY	1 cut(s)	1597
BssNI	GRCGYC	1 cut(s)	2194
BssSI	CACGAG	1 cut(s)	2853
BssT1I	CCWWGG	3 cut(s)	77, 576, 1456
Bst2BI	CACGAG	1 cut(s)	2853
Bst2UI	CCWGG	8 cut(s)	561, 777, 2111, 2226, 2349, 2641, 2661, 2864
Bst4CI	ACNGT	3 cut(s)	48, 2583, 2768
Bst6I	CTCTTC	7 cut(s)	390, 777, 1242, 1264, 1623, 1800, 2724
BstACI	GRCGYC	1 cut(s)	2194
BstAPI	GCANNNNNTGC	1 cut(s)	374
BstBAI	YACGTR	1 cut(s)	2339
BstDEI	CTNAG	7 cut(s)	828, 1353, 1405, 1770, 1914, 1983, 2445
BstDSI	CCRYGG	1 cut(s)	2079
BstFNI	CGCG	2 cut(s)	924, 2081
BstH2I	RGCGCY	1 cut(s)	1714
BstHHI	GCGC	4 cut(s)	651, 924, 1713, 2710
BstMAI	GTCTC	3 cut(s)	692, 2649, 2877
BstMCI	CGRYCG	1 cut(s)	111
BstMWI	GCNNNNNNNGC	9 cut(s)	93, 326, 374, 383, 940, 1505, 1837, 2202, 2714
BstNI	CCWGG	8 cut(s)	561, 777, 2111, 2226, 2349, 2641, 2661, 2864
BstPAI	GACNNNNGTC	1 cut(s)	2187
BstSFI	CTRYAG	2 cut(s)	1233, 1281
BstSLI	GKGCMC	4 cut(s)	89, 102, 494, 2388
BstSNI	TACGTA	1 cut(s)	2339
BstUI	CGCG	2 cut(s)	924, 2081
BstV1I	GCAGC	6 cut(s)	352, 658, 836, 1588, 2270, 2833
BstV2I	GAAGAC	1 cut(s)	2187
BstX2I	RGATCY	3 cut(s)	706, 1262, 2294
BstXI	CCANNNNNNTGG	1 cut(s)	560
BstYI	RGATCY	3 cut(s)	706, 1262, 2294
Bsu36I	CCTNAGG	2 cut(s)	1914, 2445
BsuI	GTATCC	1 cut(s)	1961
BsuRI	GGCC	5 cut(s)	87, 1933, 2215, 2386, 2464
BtgI	CCRYGG	1 cut(s)	2079
BtrI	CACGTC	1 cut(s)	61
BtsI	GCAGTG	1 cut(s)	513
BtsIMutI	CAGTG	3 cut(s)	44, 513, 1957
CaiI	CAGNNNCTG	1 cut(s)	2165
CfoI	GCGC	4 cut(s)	651, 924, 1713, 2710
Cfr10I	RCCGGY	1 cut(s)	1597
Cfr13I	GGNCC	6 cut(s)	85, 86, 2240, 2323, 2384, 2385
Cfr42I	CCGCGG	1 cut(s)	2082
CseI	GACGC	1 cut(s)	2202
CsiI	ACCWGGT	1 cut(s)	2639
Csp6I	GTAC	9 cut(s)	40, 157, 1345, 1480, 1885, 2222, 2567, 2584, 2680
CviAII	CATG	9 cut(s)	166, 734, 1470, 1585, 1699, 1719, 2122, 2177, 2455
CviQI	GTAC	9 cut(s)	40, 157, 1345, 1480, 1885, 2222, 2567, 2584, 2680
DdeI	CTNAG	7 cut(s)	828, 1353, 1405, 1770, 1914, 1983, 2445
DraI	TTTAAA	2 cut(s)	1413, 1567
EaeI	YGGCCR	1 cut(s)	1931
Eam1104I	CTCTTC	7 cut(s)	390, 777, 1242, 1264, 1623, 1800, 2724
EarI	CTCTTC	7 cut(s)	390, 777, 1242, 1264, 1623, 1800, 2724
Ecl136II	GAGCTC	1 cut(s)	2516
Eco105I	TACGTA	1 cut(s)	2339
Eco130I	CCWWGG	3 cut(s)	77, 576, 1456
Eco147I	AGGCCT	1 cut(s)	2464
Eco24I	GRGCYC	4 cut(s)	89, 1329, 2388, 2518
Eco31I	GGTCTC	2 cut(s)	2649, 2877
Eco47I	GGWCC	2 cut(s)	2240, 2323
Eco47III	AGCGCT	1 cut(s)	1712
Eco53kI	GAGCTC	1 cut(s)	2516
Eco57I	CTGAAG	1 cut(s)	428
Eco81I	CCTNAGG	2 cut(s)	1914, 2445
Eco88I	CYCGRG	1 cut(s)	1376
EcoICRI	GAGCTC	1 cut(s)	2516
EcoO109I	RGGNCCY	3 cut(s)	85, 86, 2385
EcoRII	CCWGG	8 cut(s)	559, 775, 2109, 2224, 2347, 2639, 2659, 2862
EcoT14I	CCWWGG	3 cut(s)	77, 576, 1456
EcoT22I	ATGCAT	1 cut(s)	1089
EcoT38I	GRGCYC	4 cut(s)	89, 1329, 2388, 2518
ErhI	CCWWGG	3 cut(s)	77, 576, 1456
FaeI	CATG	9 cut(s)	169, 737, 1473, 1588, 1702, 1722, 2125, 2180, 2458
FalI	AAGNNNNNCTT	2 cut(s)	1261, 1293
FaqI	GGGAC	2 cut(s)	445, 2336
FatI	CATG	9 cut(s)	165, 733, 1469, 1584, 1698, 1718, 2121, 2176, 2454
FauI	CCCGC	4 cut(s)	1129, 1206, 1300, 2086
FauNDI	CATATG	3 cut(s)	911, 1041, 2812
FbaI	TGATCA	1 cut(s)	1576
FblI	GTMKAC	3 cut(s)	57, 1305, 2191
FriOI	GRGCYC	4 cut(s)	89, 1329, 2388, 2518
FspBI	CTAG	6 cut(s)	29, 78, 1266, 1611, 2460, 2466
FspI	TGCGCA	1 cut(s)	2709
GlaI	GCGC	4 cut(s)	650, 923, 1712, 2709
GsaI	CCCAGC	1 cut(s)	2385
GsuI	CTGGAG	3 cut(s)	965, 2247, 2901
HaeII	RGCGCY	1 cut(s)	1714
HaeIII	GGCC	5 cut(s)	87, 1933, 2215, 2386, 2464
HapII	CCGG	6 cut(s)	488, 1298, 1329, 1598, 1622, 2652
HgaI	GACGC	1 cut(s)	2202
HhaI	GCGC	4 cut(s)	651, 924, 1713, 2710
Hin1I	GRCGYC	1 cut(s)	2194
Hin1II	CATG	9 cut(s)	169, 737, 1473, 1588, 1702, 1722, 2125, 2180, 2458
Hin6I	GCGC	4 cut(s)	649, 922, 1711, 2708
HinP1I	GCGC	4 cut(s)	649, 922, 1711, 2708
HincII	GTYRAC	4 cut(s)	58, 782, 1306, 2192
HindII	GTYRAC	4 cut(s)	58, 782, 1306, 2192
HindIII	AAGCTT	1 cut(s)	290
HpaII	CCGG	6 cut(s)	488, 1298, 1329, 1598, 1622, 2652
HphI	GGTGA	5 cut(s)	775, 1151, 1650, 2507, 2718
Hpy166II	GTNNAC	8 cut(s)	58, 742, 782, 842, 1107, 1306, 2192, 2439
Hpy8I	GTNNAC	8 cut(s)	58, 742, 782, 842, 1107, 1306, 2192, 2439
Hpy99I	CGWCG	5 cut(s)	59, 62, 116, 357, 2196
HpyAV	CCTTC	7 cut(s)	665, 1092, 1418, 1689, 2022, 2733, 2827
HpyCH4III	ACNGT	3 cut(s)	48, 2583, 2768
HpyCH4IV	ACGT	5 cut(s)	60, 114, 346, 355, 2338
HpyF10VI	GCNNNNNNNGC	9 cut(s)	93, 326, 374, 383, 940, 1505, 1837, 2202, 2714
HpyF3I	CTNAG	7 cut(s)	828, 1353, 1405, 1770, 1914, 1983, 2445
HpySE526I	ACGT	5 cut(s)	60, 114, 346, 355, 2338
Hsp92I	GRCGYC	1 cut(s)	2194
Hsp92II	CATG	9 cut(s)	169, 737, 1473, 1588, 1702, 1722, 2125, 2180, 2458
HspAI	GCGC	4 cut(s)	649, 922, 1711, 2708
Kpn2I	TCCGGA	1 cut(s)	1621
KpnI	GGTACC	1 cut(s)	43
Ksp22I	TGATCA	1 cut(s)	1576
KspI	CCGCGG	1 cut(s)	2082
LguI	GCTCTTC	3 cut(s)	1623, 1800, 2724
LmnI	GCTCC	7 cut(s)	217, 325, 1300, 1324, 2228, 2807, 2863
Lsp1109I	GCAGC	6 cut(s)	352, 658, 836, 1588, 2270, 2833
MabI	ACCWGGT	1 cut(s)	2639
MaeI	CTAG	6 cut(s)	29, 78, 1266, 1611, 2460, 2466
MaeII	ACGT	5 cut(s)	60, 114, 346, 355, 2338
MaeIII	GTNAC	3 cut(s)	1366, 2062, 2495
MbiI	CCGCTC	1 cut(s)	1295
MfeI	CAATTG	3 cut(s)	306, 1944, 2232
MflI	RGATCY	3 cut(s)	706, 1262, 2294
MhlI	GDGCHC	9 cut(s)	89, 102, 494, 621, 1329, 1618, 2388, 2518, 2860
MlyI	GAGTC	2 cut(s)	2535, 2845
MmeI	TCCRAC	1 cut(s)	2853
Mph1103I	ATGCAT	1 cut(s)	1089
MroI	TCCGGA	1 cut(s)	1621
MslI	CAYNNNNRTG	2 cut(s)	198, 1474
MspA1I	CMGCKG	4 cut(s)	24, 827, 2081, 2381
MspI	CCGG	6 cut(s)	488, 1298, 1329, 1598, 1622, 2652
MunI	CAATTG	3 cut(s)	306, 1944, 2232
MvaI	CCWGG	8 cut(s)	561, 777, 2111, 2226, 2349, 2641, 2661, 2864
MvnI	CGCG	2 cut(s)	924, 2081
MwoI	GCNNNNNNNGC	9 cut(s)	93, 326, 374, 383, 940, 1505, 1837, 2202, 2714
NciI	CCSGG	3 cut(s)	489, 1329, 2653
NdeI	CATATG	3 cut(s)	911, 1041, 2812
NheI	GCTAGC	1 cut(s)	28
NlaIII	CATG	9 cut(s)	169, 737, 1473, 1588, 1702, 1722, 2125, 2180, 2458
NlaIV	GGNNCC	7 cut(s)	41, 87, 88, 1326, 1591, 2324, 2386
NmeAIII	GCCGAG	1 cut(s)	658
NmuCI	GTSAC	1 cut(s)	2495
NsbI	TGCGCA	1 cut(s)	2709
NsiI	ATGCAT	1 cut(s)	1089
PasI	CCCWGGG	1 cut(s)	2110
PceI	AGGCCT	1 cut(s)	2464
PciSI	GCTCTTC	3 cut(s)	1623, 1800, 2724
PcsI	WCGNNNNNNNCGW	1 cut(s)	352
PfeI	GAWTC	9 cut(s)	337, 442, 470, 593, 949, 1222, 1274, 2753, 2900
PflMI	CCANNNNNTGG	1 cut(s)	2116
PfoI	TCCNGGA	1 cut(s)	2347
Ple19I	CGATCG	1 cut(s)	111
PleI	GAGTC	2 cut(s)	2534, 2845
PpsI	GAGTC	2 cut(s)	2534, 2845
Ppu21I	YACGTR	1 cut(s)	2339
PshAI	GACNNNNGTC	1 cut(s)	2187
PshBI	ATTAAT	1 cut(s)	1074
PsiI	TTATAA	1 cut(s)	2046
Psp124BI	GAGCTC	1 cut(s)	2518
Psp1406I	AACGTT	1 cut(s)	346
Psp6I	CCWGG	8 cut(s)	559, 775, 2109, 2224, 2347, 2639, 2659, 2862
PspFI	CCCAGC	1 cut(s)	2381
PspGI	CCWGG	8 cut(s)	559, 775, 2109, 2224, 2347, 2639, 2659, 2862
PspN4I	GGNNCC	7 cut(s)	41, 87, 88, 1326, 1591, 2324, 2386
PspOMI	GGGCCC	2 cut(s)	85, 2384
PspPI	GGNCC	6 cut(s)	85, 86, 2240, 2323, 2384, 2385
PstI	CTGCAG	1 cut(s)	1285
PstNI	CAGNNNCTG	1 cut(s)	2165
PsuI	RGATCY	3 cut(s)	706, 1262, 2294
PvuI	CGATCG	1 cut(s)	111
PvuII	CAGCTG	2 cut(s)	827, 2381
RsaI	GTAC	9 cut(s)	41, 158, 1346, 1481, 1886, 2223, 2568, 2585, 2681
RsaNI	GTAC	9 cut(s)	40, 157, 1345, 1480, 1885, 2222, 2567, 2584, 2680
RseI	CAYNNNNRTG	2 cut(s)	198, 1474
SacI	GAGCTC	1 cut(s)	2518
SacII	CCGCGG	1 cut(s)	2082
SalI	GTCGAC	3 cut(s)	56, 1304, 2190
SapI	GCTCTTC	3 cut(s)	1623, 1800, 2724
Sau96I	GGNCC	6 cut(s)	85, 86, 2240, 2323, 2384, 2385
SchI	GAGTC	2 cut(s)	2535, 2845
SduI	GDGCHC	9 cut(s)	89, 102, 494, 621, 1329, 1618, 2388, 2518, 2860
SexAI	ACCWGGT	1 cut(s)	2639
SfcI	CTRYAG	2 cut(s)	1233, 1281
Sfr303I	CCGCGG	1 cut(s)	2082
SgrBI	CCGCGG	1 cut(s)	2082
SgrDI	CGTCGACG	1 cut(s)	56
SinI	GGWCC	2 cut(s)	2240, 2323
SmiMI	CAYNNNNRTG	2 cut(s)	198, 1474
SmlI	CTYRAG	2 cut(s)	2517, 2593
SmoI	CTYRAG	2 cut(s)	2517, 2593
SnaBI	TACGTA	1 cut(s)	2339
SseBI	AGGCCT	1 cut(s)	2464
SspI	AATATT	4 cut(s)	246, 530, 753, 2290
SspMI	CTAG	6 cut(s)	29, 78, 1266, 1611, 2460, 2466
SstI	GAGCTC	1 cut(s)	2518
StuI	AGGCCT	1 cut(s)	2464
StyI	CCWWGG	3 cut(s)	77, 576, 1456
TaaI	ACNGT	3 cut(s)	48, 2583, 2768
TaiI	ACGT	5 cut(s)	63, 117, 349, 358, 2341
TaqI	TCGA	9 cut(s)	57, 111, 147, 162, 352, 1305, 1999, 2191, 2266
TatI	WGTACW	2 cut(s)	1884, 2566
TauI	GCSGC	4 cut(s)	380, 1871, 2084, 2821
TfiI	GAWTC	9 cut(s)	337, 442, 470, 593, 949, 1222, 1274, 2753, 2900
TscAI	CASTG	3 cut(s)	51, 513, 1957
TseFI	GTSAC	1 cut(s)	2495
TseI	GCWGC	6 cut(s)	365, 646, 824, 1601, 2258, 2821
Tsp45I	GTSAC	1 cut(s)	2495
TspGWI	ACGGA	2 cut(s)	1814, 2399
TspRI	CASTG	3 cut(s)	51, 513, 1957
Van91I	CCANNNNNTGG	1 cut(s)	2116
VpaK11BI	GGWCC	2 cut(s)	2240, 2323
VspI	ATTAAT	1 cut(s)	1074
XapI	RAATTY	3 cut(s)	416, 1358, 2671
XbaI	TCTAGA	1 cut(s)	1265
XcmI	CCANNNNNNNNNTGG	1 cut(s)	58
XmaJI	CCTAGG	1 cut(s)	77
XmiI	GTMKAC	3 cut(s)	57, 1305, 2191
XspI	CTAG	6 cut(s)	29, 78, 1266, 1611, 2460, 2466
Zsp2I	ATGCAT	1 cut(s)	1089

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.