Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0007016

Physical Location & Seq

Genomic Coordinates Reverse (-)

2771270 .. 2776658

Gene Structure 5389 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG041600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1572 bp

ATGGGCGTCCCGGCTTTTTACCGCTGGCTGGCGGATCGGTACCCGCTCTCGATCGTCGACGTGGTGGAGGAGCACCCCAGGGAGGACTCCAACGGCGTGCCGAGACCAATCGACGTCTCGAGGCCAAACCCTAACGGCTTCGAGTTCGATAACCTTTACCTCGACATGAACGGCATTATACATCCCTGTTTTCATCCCGACGGCCGACCTGCCCCTGCTACTTATCAGGACGTATTCAAGTCAATATTTGACTACATTGATCATCTCTTCACGCTGGTGCGCCCAAGAAAGCTTCTTTTTATGGCGATTGATGGAGTAGCACCAAGAGCTAAAATGAATCAGCAACGCTCTCGACGTTTCAGAGCTGCAAAAGATGCGGCTGAGGCGGAAGCTGAAGAGGAAAGACTAAAGAAAGAATTTGAGATGGAGGGGACATCATTGGTTTCTAAAGAGAAACCTGAAACTTCAGATACAAATGTTATTACTCCAGGCACTCAATTTATGGCGGTGCTCTCAGTAGCACTTCAATATTTTATACAATTTAAATTGAACAACGACCGTGGTTGGCGGTCTACAAAGGTTATTCTTTCTGATGCCAACGTTGCTGGCGAGGGAGAGCACAAAATAATGTCATACATACGATCGCAACGCAATCTTTTGGGTTCTGATCCTAACACTCGGCATTGTCTTTATGGTCTGGATGCAGATCTAATTATGCTTGCTTTAGCTACACATGAGGTTCACTTCTCAATACTAAGAGAGGTGATTGCTCTTCCAGGTCAACAGGAAAAATGTTTTCTTTGTGGACAAGTTGGTCATCTGGCAGCTGAATGTCGTGGTGGAGATGATGGTGCGGCCGATGAAACTCCAGTTCACAAGAAGAAATATCAGTTCCTCAACATCTGGGTGTTGCGTGAATATTTGGAATACGAGCTGGACATACCCAATCCTCCTTTTCCGCTTAATTTGGAAAGGATAGTGGATGATTTTGTGTTTATGTGCTTTTTTGTTGGCAATGATTTTCTTCCACATATGCCAACATTGGAGATCAGAGAGGGTGCAATTAATTTATTAATGCATATTTATAGAAGAGAATTTTCTGCTATGGGTGGCTATCTCACTGATGCGGGTGAGGTATTGTTAGATAGAGTAGAGCATTTTATCCAGTCTGTTGCTGTCTATGAGCGCCAAATTTTTCAAAAGCGGGCTCGAATTCAGCAGGCTTTTGAGAATAATGAAGAGAGACAGAGAAATAGAAGAGAGGCTTGTGAAGAGCTACCGGCTCCAGTGGTAGAAAAGGTGGTGGACAAGGTTAAATTGGGGGAGCCGGGATATACAGAAAGGTATTATGCTGAGAAGTTTCAAGTATCAAAGCCAGAGGAGATTGAACAAGTTAAAAAAGACTTGGTTCTAAAATATGTTGAAGGCTTATGTTGGGTCTGCCGATATTACTACCAAGGGGTCTGCTCATGGCAATGGTTAGTTTGGCTTGATTATTGCTGGAAAGTGTTGTGCTTTATTTTACTTTTTGGGGAAATACAAGGATATATATACACATCCTTATATACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000291 GO:0000902 GO:0000932 GO:0000956 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003824 GO:0004518 GO:0004527 GO:0004532 GO:0004534 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005844 GO:0006139 GO:0006401 GO:0006402 GO:0006725 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0008409 GO:0009056 GO:0009057 GO:0009266 GO:0009408 GO:0009628 GO:0009653 GO:0009826 GO:0009888 GO:0009892 GO:0009987 GO:0010087 GO:0010286 GO:0010468 GO:0010494 GO:0010586 GO:0010587 GO:0010605 GO:0010629 GO:0016043 GO:0016049 GO:0016070 GO:0016071 GO:0016787 GO:0016788 GO:0016796 GO:0016896 GO:0019222 GO:0019439 GO:0031086 GO:0031087 GO:0032502 GO:0032989 GO:0032991 GO:0033554 GO:0034605 GO:0034641 GO:0034655 GO:0034660 GO:0034661 GO:0035770 GO:0036464 GO:0040007 GO:0040029 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046700 GO:0048519 GO:0048589 GO:0048856 GO:0048869 GO:0050789 GO:0050896 GO:0051301 GO:0051716 GO:0060255 GO:0060560 GO:0065007 GO:0070370 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0090501 GO:0090503 GO:0097159 GO:0140098 GO:1901360 GO:1901361 GO:1901363 GO:1901575 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03008 ko03018 ko04016 map03008 map03018 map04016

Pfam Domains

Protein Families

XRN_N zf-CCHC

Protein Analysis

523

Amino Acids

60.65

Weight (kDa)

5.47

Isoelectric Point (pI)

39.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
XRN_N	PF03159	1 - 254	9.5e-99	XRN 5'-3' exonuclease N-terminus
XRN_M	PF17846	321 - 422	3.5e-43	Xrn1 helical domain
XRN_M	PF17846	432 - 494	5.6e-25	Xrn1 helical domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007016)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G54490 AT1G54490
fragaria_vesca	FvH4_6g03690 FvH4_6g03690
malus_domestica	MD04G1219200.v1.1 MD12G1236200.v1.1
prunus_persica	Prupe.6G338500_v2.0.a1 Prupe.6G338500_v2.0.a1
pyrus_communis	pycom04g19450 pycom12g21730
rosa_chinensis	RchiOBHm_Chr3g0452231
rosa_laevigata	RLG00000025615
rosa_multiflora	Rmu_sc0037132.1_g000001 Rmu_sc0041263.1_g000001
rosa_roxburghii	Rroxscaffold_164G00435930 Rroxscaffold_6G00429350
rosa_rugosa	Rorug02G0639400
rosa_samantha	Rh3AG041300 Rh3BG043000 Rh3BG043200 Rh3CG041400 Rh3CG041600 Rh3DG042300 Rh3DG042500
rosa_wichuraiana	Rw3G003160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	813
AatII	GACGTC	1 cut(s)	117
Acc36I	ACCTGC	1 cut(s)	217
Acc65I	GGTACC	1 cut(s)	39
AccB1I	GGYRCC	1 cut(s)	39
AccBSI	CCGCTC	1 cut(s)	46
AccI	GTMKAC	2 cut(s)	57, 572
AclI	AACGTT	1 cut(s)	600
AclWI	GGATC	2 cut(s)	42, 662
AcoI	YGGCCR	2 cut(s)	202, 855
AcsI	RAATTY	4 cut(s)	416, 1094, 1191, 1212
AcuI	CTGAAG	2 cut(s)	414, 450
AcyI	GRCGYC	2 cut(s)	6, 114
AfaI	GTAC	1 cut(s)	41
AfiI	CCNNNNNNNGG	2 cut(s)	28, 82
AgsI	TTSAA	7 cut(s)	238, 527, 550, 1199, 1364, 1388, 1424
AjiI	CACGTC	1 cut(s)	61
AjnI	CCWGG	3 cut(s)	77, 487, 775
AleI	CACNNNNGTG	1 cut(s)	275
AluBI	AGCT	8 cut(s)	292, 329, 365, 392, 728, 827, 934, 1276
AluI	AGCT	8 cut(s)	292, 329, 365, 392, 728, 827, 934, 1276
Alw21I	GWGCWC	3 cut(s)	75, 513, 621
Alw26I	GTCTC	3 cut(s)	97, 121, 1237
AlwI	GGATC	2 cut(s)	42, 662
Ama87I	CYCGRG	1 cut(s)	118
AoxI	GGCC	3 cut(s)	122, 202, 855
ApeKI	GCWGC	2 cut(s)	365, 824
ApoI	RAATTY	4 cut(s)	416, 1094, 1191, 1212
AseI	ATTAAT	2 cut(s)	1065, 1073
Asp718I	GGTACC	1 cut(s)	39
AspLEI	GCGC	2 cut(s)	282, 1188
AsuC2I	CCSGG	2 cut(s)	11, 1329
AsuHPI	GGTGA	2 cut(s)	775, 1142
AvaI	CYCGRG	1 cut(s)	118
BaeI	ACNNNNGTAYC	2 cut(s)	462, 495
BanI	GGYRCC	1 cut(s)	39
BanII	GRGCYC	1 cut(s)	1210
Bbv12I	GWGCWC	3 cut(s)	75, 513, 621
BbvCI	CCTCAGC	1 cut(s)	381
BbvI	GCAGC	2 cut(s)	352, 836
BccI	CCATC	3 cut(s)	305, 418, 842
BceAI	ACGGC	4 cut(s)	109, 151, 187, 217
BcgI	CGANNNNNNTGC	2 cut(s)	332, 366
BciT130I	CCWGG	3 cut(s)	79, 489, 777
BclI	TGATCA	1 cut(s)	259
BcnI	CCSGG	2 cut(s)	11, 1329
BcoDI	GTCTC	3 cut(s)	97, 121, 1237
BfoI	RGCGCY	1 cut(s)	1189
BfuAI	ACCTGC	1 cut(s)	217
BglII	AGATCT	1 cut(s)	706
BisI	GCNGC	4 cut(s)	366, 378, 825, 855
BlsI	GCNGC	4 cut(s)	367, 379, 826, 856
Bme1390I	CCNGG	5 cut(s)	11, 79, 489, 777, 1329
BmeT110I	CYCGRG	1 cut(s)	118
BmgBI	CACGTC	1 cut(s)	61
BmiI	GGNNCC	3 cut(s)	41, 1284, 1326
BmrFI	CCNGG	5 cut(s)	11, 79, 489, 777, 1329
BmsI	GCATC	4 cut(s)	364, 583, 691, 1114
BpmI	CTGGAG	3 cut(s)	471, 852, 1269
Bpu10I	CCTNAGC	1 cut(s)	381
BpuMI	CCSGG	2 cut(s)	11, 1329
BsaBI	GATNNNNATC	1 cut(s)	705
BsaHI	GRCGYC	2 cut(s)	6, 114
BsaI	GGTCTC	1 cut(s)	97
BsaJI	CCNNGG	4 cut(s)	77, 78, 559, 1456
Bsc4I	CCNNNNNNNGG	2 cut(s)	28, 82
Bse118I	RCCGGY	1 cut(s)	1279
Bse1I	ACTGG	3 cut(s)	869, 1165, 1286
Bse3DI	GCAATG	2 cut(s)	1021, 1481
Bse8I	GATNNNNATC	1 cut(s)	705
BseBI	CCWGG	3 cut(s)	79, 489, 777
BseDI	CCNNGG	4 cut(s)	77, 78, 559, 1456
BseGI	GGATG	5 cut(s)	181, 193, 706, 988, 1556
BseJI	GATNNNNATC	1 cut(s)	705
BseLI	CCNNNNNNNGG	2 cut(s)	28, 82
BseMI	GCAATG	2 cut(s)	1021, 1481
BseMII	CTCAG	3 cut(s)	372, 528, 1344
BseNI	ACTGG	3 cut(s)	869, 1165, 1286
BseRI	GAGGAG	2 cut(s)	83, 1394
BseX3I	CGGCCG	2 cut(s)	202, 855
BseXI	GCAGC	2 cut(s)	352, 836
Bsh1285I	CGRYCG	5 cut(s)	54, 205, 559, 644, 858
BshFI	GGCC	3 cut(s)	124, 204, 857
BshNI	GGYRCC	1 cut(s)	39
BsiEI	CGRYCG	5 cut(s)	54, 205, 559, 644, 858
BsiHKAI	GWGCWC	3 cut(s)	75, 513, 621
BsiHKCI	CYCGRG	1 cut(s)	118
BsiSI	CCGG	3 cut(s)	11, 1280, 1328
BslFI	GGGAC	1 cut(s)	445
BslI	CCNNNNNNNGG	2 cut(s)	28, 82
BsmAI	GTCTC	3 cut(s)	97, 121, 1237
BsmBI	CGTCTC	1 cut(s)	121
BsmFI	GGGAC	1 cut(s)	445
BsnI	GGCC	3 cut(s)	124, 204, 857
Bso31I	GGTCTC	1 cut(s)	97
BsoBI	CYCGRG	1 cut(s)	118
Bsp1286I	GDGCHC	4 cut(s)	75, 513, 621, 1210
Bsp143I	GATC	7 cut(s)	34, 51, 259, 641, 667, 706, 1047
BspANI	GGCC	3 cut(s)	124, 204, 857
BspCNI	CTCAG	3 cut(s)	373, 527, 1345
BspLI	GGNNCC	3 cut(s)	41, 1284, 1326
BspMI	ACCTGC	1 cut(s)	217
BspPI	GGATC	2 cut(s)	42, 662
BspQI	GCTCTTC	2 cut(s)	777, 1266
BspT107I	GGYRCC	1 cut(s)	39
BspTNI	GGTCTC	1 cut(s)	97
BsrBI	CCGCTC	1 cut(s)	46
BsrDI	GCAATG	2 cut(s)	1021, 1481
BsrFI	RCCGGY	1 cut(s)	1279
BsrI	ACTGG	3 cut(s)	869, 1165, 1286
BssAI	RCCGGY	1 cut(s)	1279
BssECI	CCNNGG	4 cut(s)	77, 78, 559, 1456
BssMI	GATC	7 cut(s)	34, 51, 259, 641, 667, 706, 1047
BssNI	GRCGYC	2 cut(s)	6, 114
BssT1I	CCWWGG	1 cut(s)	1456
Bst2UI	CCWGG	3 cut(s)	79, 489, 777
Bst4CI	ACNGT	1 cut(s)	560
Bst6I	CTCTTC	7 cut(s)	272, 390, 777, 1084, 1233, 1252, 1266
BstACI	GRCGYC	2 cut(s)	6, 114
BstAPI	GCANNNNNTGC	1 cut(s)	374
BstC8I	GCNNGC	7 cut(s)	26, 30, 98, 607, 720, 1206, 1221
BstDEI	CTNAG	4 cut(s)	381, 514, 755, 1353
BstDSI	CCRYGG	1 cut(s)	559
BstF5I	GGATG	5 cut(s)	181, 193, 706, 988, 1556
BstH2I	RGCGCY	1 cut(s)	1189
BstHHI	GCGC	2 cut(s)	282, 1188
BstKTI	GATC	7 cut(s)	37, 54, 262, 644, 670, 709, 1050
BstMAI	GTCTC	3 cut(s)	97, 121, 1237
BstMBI	GATC	7 cut(s)	34, 51, 259, 641, 667, 706, 1047
BstMCI	CGRYCG	5 cut(s)	54, 205, 559, 644, 858
BstMWI	GCNNNNNNNGC	4 cut(s)	326, 374, 383, 602
BstNI	CCWGG	3 cut(s)	79, 489, 777
BstSCI	CCNGG	5 cut(s)	9, 77, 487, 775, 1327
BstV1I	GCAGC	2 cut(s)	352, 836
BstX2I	RGATCY	1 cut(s)	706
BstYI	RGATCY	1 cut(s)	706
BstZI	CGGCCG	2 cut(s)	202, 855
BsuRI	GGCC	3 cut(s)	124, 204, 857
BtgI	CCRYGG	1 cut(s)	559
BtrI	CACGTC	1 cut(s)	61
BtsCI	GGATG	5 cut(s)	181, 193, 706, 988, 1556
BtsIMutI	CAGTG	2 cut(s)	1119, 1293
BveI	ACCTGC	1 cut(s)	217
Cac8I	GCNNGC	7 cut(s)	26, 30, 98, 607, 720, 1206, 1221
CfoI	GCGC	2 cut(s)	282, 1188
Cfr10I	RCCGGY	1 cut(s)	1279
Csp6I	GTAC	1 cut(s)	40
CspCI	CAANNNNNGTGG	2 cut(s)	541, 576
CviAII	CATG	3 cut(s)	166, 734, 1470
CviQI	GTAC	1 cut(s)	40
DdeI	CTNAG	4 cut(s)	381, 514, 755, 1353
DpnI	GATC	7 cut(s)	36, 53, 261, 643, 669, 708, 1049
DpnII	GATC	7 cut(s)	34, 51, 259, 641, 667, 706, 1047
DraI	TTTAAA	1 cut(s)	544
DrdI	GACNNNNNNGTC	1 cut(s)	813
DseDI	GACNNNNNNGTC	1 cut(s)	813
EaeI	YGGCCR	2 cut(s)	202, 855
EagI	CGGCCG	2 cut(s)	202, 855
Eam1104I	CTCTTC	7 cut(s)	272, 390, 777, 1084, 1233, 1252, 1266
EarI	CTCTTC	7 cut(s)	272, 390, 777, 1084, 1233, 1252, 1266
EciI	GGCGGA	2 cut(s)	47, 401
EclXI	CGGCCG	2 cut(s)	202, 855
Eco130I	CCWWGG	1 cut(s)	1456
Eco24I	GRGCYC	1 cut(s)	1210
Eco31I	GGTCTC	1 cut(s)	97
Eco52I	CGGCCG	2 cut(s)	202, 855
Eco57I	CTGAAG	2 cut(s)	414, 450
Eco88I	CYCGRG	1 cut(s)	118
EcoRI	GAATTC	1 cut(s)	1212
EcoRII	CCWGG	3 cut(s)	77, 487, 775
EcoT14I	CCWWGG	1 cut(s)	1456
EcoT22I	ATGCAT	1 cut(s)	1080
EcoT38I	GRGCYC	1 cut(s)	1210
ErhI	CCWWGG	1 cut(s)	1456
Esp3I	CGTCTC	1 cut(s)	121
FaeI	CATG	3 cut(s)	169, 737, 1473
FalI	AAGNNNNNCTT	2 cut(s)	1249, 1281
FaqI	GGGAC	1 cut(s)	445
FatI	CATG	3 cut(s)	165, 733, 1469
FauI	CCCGC	3 cut(s)	51, 1120, 1197
FauNDI	CATATG	1 cut(s)	1032
FbaI	TGATCA	1 cut(s)	259
FblI	GTMKAC	2 cut(s)	57, 572
Fnu4HI	GCNGC	4 cut(s)	366, 378, 825, 855
FokI	GGATG	5 cut(s)	168, 180, 713, 995, 1543
FriOI	GRGCYC	1 cut(s)	1210
Fsp4HI	GCNGC	4 cut(s)	366, 378, 825, 855
GlaI	GCGC	2 cut(s)	281, 1187
GluI	GCNGC	4 cut(s)	366, 378, 825, 855
GsuI	CTGGAG	3 cut(s)	471, 852, 1269
HaeII	RGCGCY	1 cut(s)	1189
HaeIII	GGCC	3 cut(s)	124, 204, 857
HapII	CCGG	3 cut(s)	11, 1280, 1328
HhaI	GCGC	2 cut(s)	282, 1188
Hin1I	GRCGYC	2 cut(s)	6, 114
Hin1II	CATG	3 cut(s)	169, 737, 1473
Hin6I	GCGC	2 cut(s)	280, 1186
HinP1I	GCGC	2 cut(s)	280, 1186
HincII	GTYRAC	2 cut(s)	58, 782
HindII	GTYRAC	2 cut(s)	58, 782
HindIII	AAGCTT	1 cut(s)	290
HinfI	GANTC	2 cut(s)	86, 337
HpaII	CCGG	3 cut(s)	11, 1280, 1328
HphI	GGTGA	2 cut(s)	775, 1142
Hpy166II	GTNNAC	7 cut(s)	58, 573, 742, 782, 806, 874, 1306
Hpy188I	TCNGA	5 cut(s)	362, 469, 592, 667, 1052
Hpy188III	TCNNGA	6 cut(s)	49, 118, 197, 227, 351, 698
Hpy8I	GTNNAC	7 cut(s)	58, 573, 742, 782, 806, 874, 1306
Hpy99I	CGWCG	5 cut(s)	59, 62, 116, 203, 357
HpyAV	CCTTC	1 cut(s)	1418
HpyCH4III	ACNGT	1 cut(s)	560
HpyCH4IV	ACGT	5 cut(s)	60, 114, 231, 355, 600
HpyCH4V	TGCA	4 cut(s)	368, 704, 1061, 1078
HpyF10VI	GCNNNNNNNGC	4 cut(s)	326, 374, 383, 602
HpyF3I	CTNAG	4 cut(s)	381, 514, 755, 1353
HpySE526I	ACGT	5 cut(s)	60, 114, 231, 355, 600
Hsp92I	GRCGYC	2 cut(s)	6, 114
Hsp92II	CATG	3 cut(s)	169, 737, 1473
HspAI	GCGC	2 cut(s)	280, 1186
KpnI	GGTACC	1 cut(s)	43
Ksp22I	TGATCA	1 cut(s)	259
Kzo9I	GATC	7 cut(s)	34, 51, 259, 641, 667, 706, 1047
LguI	GCTCTTC	2 cut(s)	777, 1266
LmnI	GCTCC	3 cut(s)	70, 1288, 1324
Lsp1109I	GCAGC	2 cut(s)	352, 836
LweI	GCATC	4 cut(s)	364, 583, 691, 1114
MaeII	ACGT	5 cut(s)	60, 114, 231, 355, 600
MalI	GATC	7 cut(s)	36, 53, 261, 643, 669, 708, 1049
MbiI	CCGCTC	1 cut(s)	46
MboI	GATC	7 cut(s)	34, 51, 259, 641, 667, 706, 1047
MboII	GAAGA	9 cut(s)	259, 407, 764, 892, 1016, 1101, 1250, 1269, 1283
MflI	RGATCY	1 cut(s)	706
MhlI	GDGCHC	4 cut(s)	75, 513, 621, 1210
MlyI	GAGTC	1 cut(s)	80
MmeI	TCCRAC	1 cut(s)	114
Mph1103I	ATGCAT	1 cut(s)	1080
MseI	TTAA	6 cut(s)	543, 963, 1065, 1073, 1314, 1395
MslI	CAYNNNNRTG	3 cut(s)	275, 905, 1474
MspA1I	CMGCKG	2 cut(s)	24, 827
MspI	CCGG	3 cut(s)	11, 1280, 1328
MspR9I	CCNGG	5 cut(s)	11, 79, 489, 777, 1329
MvaI	CCWGG	3 cut(s)	79, 489, 777
MwoI	GCNNNNNNNGC	4 cut(s)	326, 374, 383, 602
NciI	CCSGG	2 cut(s)	11, 1329
NdeI	CATATG	1 cut(s)	1032
NdeII	GATC	7 cut(s)	34, 51, 259, 641, 667, 706, 1047
NlaIII	CATG	3 cut(s)	169, 737, 1473
NlaIV	GGNNCC	3 cut(s)	41, 1284, 1326
NmeAIII	GCCGAG	2 cut(s)	126, 658
NsiI	ATGCAT	1 cut(s)	1080
OliI	CACNNNNGTG	1 cut(s)	275
PaeR7I	CTCGAG	1 cut(s)	118
PasI	CCCWGGG	1 cut(s)	78
PciSI	GCTCTTC	2 cut(s)	777, 1266
PcsI	WCGNNNNNNNCGW	2 cut(s)	352, 606
PfeI	GAWTC	1 cut(s)	337
PkrI	GCNGC	4 cut(s)	367, 379, 826, 856
Ple19I	CGATCG	2 cut(s)	54, 644
PleI	GAGTC	1 cut(s)	80
PpsI	GAGTC	1 cut(s)	80
PshBI	ATTAAT	2 cut(s)	1065, 1073
Psp1406I	AACGTT	1 cut(s)	600
Psp6I	CCWGG	3 cut(s)	77, 487, 775
PspGI	CCWGG	3 cut(s)	77, 487, 775
PspN4I	GGNNCC	3 cut(s)	41, 1284, 1326
PsuI	RGATCY	1 cut(s)	706
PvuI	CGATCG	2 cut(s)	54, 644
PvuII	CAGCTG	1 cut(s)	827
RsaI	GTAC	1 cut(s)	41
RsaNI	GTAC	1 cut(s)	40
RseI	CAYNNNNRTG	3 cut(s)	275, 905, 1474
SalI	GTCGAC	1 cut(s)	56
SapI	GCTCTTC	2 cut(s)	777, 1266
SaqAI	TTAA	6 cut(s)	543, 963, 1065, 1073, 1314, 1395
SatI	GCNGC	4 cut(s)	366, 378, 825, 855
Sau3AI	GATC	7 cut(s)	34, 51, 259, 641, 667, 706, 1047
SchI	GAGTC	1 cut(s)	80
ScrFI	CCNGG	5 cut(s)	11, 79, 489, 777, 1329
SduI	GDGCHC	4 cut(s)	75, 513, 621, 1210
SfaNI	GCATC	4 cut(s)	364, 583, 691, 1114
Sfr274I	CTCGAG	1 cut(s)	118
SgrDI	CGTCGACG	1 cut(s)	56
SlaI	CTCGAG	1 cut(s)	118
SmiI	ATTTAAAT	1 cut(s)	544
SmiMI	CAYNNNNRTG	3 cut(s)	275, 905, 1474
SmlI	CTYRAG	1 cut(s)	118
SmoI	CTYRAG	1 cut(s)	118
SspI	AATATT	3 cut(s)	246, 530, 920
StyD4I	CCNGG	5 cut(s)	9, 77, 487, 775, 1327
StyI	CCWWGG	1 cut(s)	1456
SwaI	ATTTAAAT	1 cut(s)	544
TaaI	ACNGT	1 cut(s)	560
TaiI	ACGT	5 cut(s)	63, 117, 234, 358, 603
TaqI	TCGA	9 cut(s)	50, 57, 111, 119, 141, 147, 162, 352, 1210
TauI	GCSGC	2 cut(s)	380, 857
TfiI	GAWTC	1 cut(s)	337
Tru1I	TTAA	6 cut(s)	543, 963, 1065, 1073, 1314, 1395
Tru9I	TTAA	6 cut(s)	543, 963, 1065, 1073, 1314, 1395
TscAI	CASTG	2 cut(s)	1126, 1293
TseI	GCWGC	2 cut(s)	365, 824
TspDTI	ATGAA	5 cut(s)	182, 182, 350, 876, 1251
TspRI	CASTG	2 cut(s)	1126, 1293
VspI	ATTAAT	2 cut(s)	1065, 1073
XapI	RAATTY	4 cut(s)	416, 1094, 1191, 1212
XhoI	CTCGAG	1 cut(s)	118
XmiI	GTMKAC	2 cut(s)	57, 572
ZraI	GACGTC	1 cut(s)	115
Zsp2I	ATGCAT	1 cut(s)	1080

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.