Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0007016

Physical Location & Seq

Genomic Coordinates Reverse (-)

2766737 .. 2776493

Gene Structure 9757 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG041300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2754 bp

ATGAACGGCATTATACATCCCTGTTTTCATCCCGACGGCCGACCTGCCCCTGCTACTTATCAGGACGTATTCAAGTCAATATTTGACTACATTGATCATCTCTTCACGCTGGTGCGCCCAAGAAAGCTTCTTTTTATGGCGATTGATGGAGTAGCACCAAGAGCTAAAATGAATCAGCAACGCTCTCGACGTTTCAGAGCTGCAAAAGATGCGGCTGAGGCGGAAGCTGAAGAGGAAAGACTAAAGAAAGAATTTGAGATGGAGGGGACATCATTGGTTTCTAAAGAGAAACCTGAAACTTCAGATACAAATGTTATTACTCCAGGCACTCAATTTATGGCGGTGCTCTCAGTAGCACTTCAATATTTTATACAATTTAAATTGAACAACGACCGTGGTTGGCGGTCTACAAAGGTTATTCTTTCTGATGCCAACGTTGCTGGCGAGGGAGAGCACAAAATAATGTCATACATACGATCGCAACGCAATCTTTTGGGTTCTGATCCTAACACTCGGCATTGTCTTTATGGTCTGGATGCAGATCTAATTATGCTTGCTTTAGCTACACATGAGGTTCACTTCTCAATACTAAGAGAGGTGATTGCTCTTCCAGGTCAACAGGAAAAATGTTTTCTTTGTGGACAAGTTGGTCATCTGGCAGCTGAATGTCGTGGTGGAGATGATGGTGCGGCCGATGAAACTCCAGTTCACAAGAAGAAATATCAGTTCCTCAACATCTGGGTGTTGCGTGAATATTTGGAATACGAGCTGGACATACCCAATCCTCCTTTTCCGCTTAATTTGGAAAGGATAGTGGATGATTTTGTGTTTATGTGCTTTTTTGTTGGCAATGATTTTCTTCCACATATGCCAACATTGGAGATCAGAGAGGGTGCAATTAATTTATTAATGCATATTTATAGAAGAGAATTTTCTGCTATGGGTGGCTATCTCACTGATGCGGGTGAGGTATTGTTAGATAGAGTAGAGCATTTTATCCAGTCTGTTGCTGTCTATGAGCGCCAAATTTTTCAAAAGCGGGCTCGAATTCAGCAGGCTTTTGAGAATAATGAAGAGAGACAGAGAAATAGAAGAGAGGCTTGTGAAGAGCTACCGGCTCCAGTGGTAGAAAAGGTGGTGGACAAGGTTAAATTGGGGGAGCCGGGATATACAGAAAGGTATTATGCTGAGAAGTTTCAAGTATCAAAGCCAGAGGAGATTGAACAAGTTAAAAAAGACTTGGTTCTAAAATATGTTGAAGGCTTATGTTGGGTCTGCCGATATTACTACCAAGGGGTCTGCTCATGGCAATGGTATTATCCATACCATTATGCTCCTTTTGCTTCTGATCTAAAAGATCTAGATGAGTTGGAAATAACATTTTTTTTGGGAGAGCCATTTAAACCCTTTGATCAGCTCATGGGAACCTTACCAGCTGCAAGTTGTAGTGCTCTTCCAGAAAAATACAGAAATTTGATGACTGATCCATCATCTCCCATTTGTGATTTCTACCCATCTGATTTTGAGATTGACATGAATGGCAAGCGCTTTGCGTGGCAGGGCATTGCCAAATTGCCATTCATTGATGAGAAGAAATTGCTTGCTCAGACAAGGAAGCTTGAAAGCACTTTAACGGAGGAAGAGAAAGCTCGAAATAGCGTGATGCTTGATTTGCTTTATGTCTATCCTTCTCATCCTTTGGCGTCGGATATTATTTTGTACTACCATTTATATTATCAGAGTCCCCCACATGAAAGATTTTTTTATACGATAAATACTAATCGTAGTGGTGGAATGAATGGATTCCTTTGGTTATCTGAGAGGAATGGCATTAGAAACGTAATCCCTTCCCCTGTGCATGGTTTTCCCAACATAGACTGTAACGAAGTCTTAAATGTTACATATGTTAGCCCTACAGCTCAAAAACACATCCCAGAACCTCCCGAGGGTGTGATCATGCCCAGAAAGGTTGTAAAACCTACGGATATCAAACCTCCCCCTGCGTTATGGCATGAAGACAATGGTCCCCGACGCTACCAAAACAGAGATAGGCCACAAATACCCGGAGCAATTGCTGGAACTGTGTTGGGAGAAGCAGCTCATCGACTTGTCAAGAACACACTAAATTTTAGACCTAGTAATCCATCCTCTGGATTTTGGGATCAATCGCAGCCTTTACGAACTTCTTCTGGAAACTACATTGGAAACTATCCAGTCAACAGACCAAGACCAGCTGGGCCATCTGGGTATGAAAGGGGTTTCCGTGAAGAACCAAATTATGGAAATTCCTTTAATCCTCAGGGCATCATGGCTAGGCCCAGAGCTCCTTACTCAAATGGTGTGCAGGGTGACAGACAGAGTTTTAGGACACAAGAAAGAACACAGTATCAAGAGCAGGGTTTTAGAGGACAAGAAAGAATACAATATCAAGAACAGTACCGCAACATGAGAACTGGGATGTCTGGTTTAACAATGGAAGGAAGTGTGAGAACCAGGTCTCCTGTAGTGGTGCAACCAGGGACGCCAAATTCAGGATACTCCACAAACCCACATCAGCAGTTTGTGCAGAACATGGGCGCTCTTCCACCGCCACCTACAAAGTGGATCAACAAAGAATTCGGTGCCAATGGTGGGATTTATGGTAGGCATCAGGAAACCGGATATGGCGGACCATATGAACAGCAGGTGAAAAAGGTTTATCAGGTAAAGACACGTCCTCCTCAGGACTTGCCAAACTCTGGAAACCAGGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000291 GO:0000902 GO:0000932 GO:0000956 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003824 GO:0004518 GO:0004527 GO:0004532 GO:0004534 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005844 GO:0006139 GO:0006401 GO:0006402 GO:0006725 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0008409 GO:0009056 GO:0009057 GO:0009266 GO:0009408 GO:0009628 GO:0009653 GO:0009826 GO:0009888 GO:0009892 GO:0009987 GO:0010087 GO:0010286 GO:0010468 GO:0010494 GO:0010586 GO:0010587 GO:0010605 GO:0010629 GO:0016043 GO:0016049 GO:0016070 GO:0016071 GO:0016787 GO:0016788 GO:0016796 GO:0016896 GO:0019222 GO:0019439 GO:0031086 GO:0031087 GO:0032502 GO:0032989 GO:0032991 GO:0033554 GO:0034605 GO:0034641 GO:0034655 GO:0034660 GO:0034661 GO:0035770 GO:0036464 GO:0040007 GO:0040029 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046700 GO:0048519 GO:0048589 GO:0048856 GO:0048869 GO:0050789 GO:0050896 GO:0051301 GO:0051716 GO:0060255 GO:0060560 GO:0065007 GO:0070370 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0090501 GO:0090503 GO:0097159 GO:0140098 GO:1901360 GO:1901361 GO:1901363 GO:1901575 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03008 ko03018 ko04016 map03008 map03018 map04016

Pfam Domains

Protein Families

XRN_N zf-CCHC

Protein Analysis

917

Amino Acids

105.05

Weight (kDa)

6.65

Isoelectric Point (pI)

46.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
XRN_N	PF03159	1 - 199	2.1e-82	XRN 5'-3' exonuclease N-terminus
XRN_M	PF17846	266 - 367	8.3e-43	Xrn1 helical domain
XRN_M	PF17846	377 - 663	2.6e-116	Xrn1 helical domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0007016)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G54490 AT1G54490
fragaria_vesca	FvH4_6g03690 FvH4_6g03690
malus_domestica	MD04G1219200.v1.1 MD12G1236200.v1.1
prunus_persica	Prupe.6G338500_v2.0.a1 Prupe.6G338500_v2.0.a1
pyrus_communis	pycom04g19450 pycom12g21730
rosa_chinensis	RchiOBHm_Chr3g0452231
rosa_laevigata	RLG00000025615
rosa_multiflora	Rmu_sc0037132.1_g000001 Rmu_sc0041263.1_g000001
rosa_roxburghii	Rroxscaffold_164G00435930 Rroxscaffold_6G00429350
rosa_rugosa	Rorug02G0639400
rosa_samantha	Rh3AG041300 Rh3BG043000 Rh3BG043200 Rh3CG041400 Rh3CG041600 Rh3DG042300 Rh3DG042500
rosa_wichuraiana	Rw3G003160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	2674
AasI	GACNNNNNNGTC	1 cut(s)	648
Acc36I	ACCTGC	2 cut(s)	52, 2674
AccB1I	GGYRCC	1 cut(s)	2621
AccB7I	CCANNNNNTGG	3 cut(s)	2150, 2279, 2738
AccI	GTMKAC	1 cut(s)	407
AclI	AACGTT	1 cut(s)	435
AclWI	GGATC	4 cut(s)	497, 1478, 2169, 2612
AcoI	YGGCCR	2 cut(s)	37, 690
AcsI	RAATTY	9 cut(s)	251, 929, 1026, 1047, 1471, 2125, 2284, 2527, 2615
AcuI	CTGAAG	2 cut(s)	249, 285
AcyI	GRCGYC	2 cut(s)	1703, 2522
AfaI	GTAC	2 cut(s)	1721, 2438
AfeI	AGCGCT	1 cut(s)	1547
AfiI	CCNNNNNNNGG	7 cut(s)	1859, 1946, 2150, 2279, 2531, 2631, 2738
AflIII	ACRYGT	1 cut(s)	2711
AgsI	TTSAA	8 cut(s)	73, 362, 385, 1034, 1199, 1223, 1259, 1622
AjiI	CACGTC	1 cut(s)	2714
AjnI	CCWGG	5 cut(s)	322, 610, 2492, 2515, 2745
AjuI	GAANNNNNNNTTGG	2 cut(s)	1562, 1594
AleI	CACNNNNGTG	1 cut(s)	110
AloI	GAACNNNNNNTCC	2 cut(s)	2482, 2514
Alw21I	GWGCWC	4 cut(s)	348, 456, 1453, 2326
Alw26I	GTCTC	2 cut(s)	1072, 2502
AlwI	GGATC	4 cut(s)	497, 1478, 2169, 2612
Ama87I	CYCGRG	1 cut(s)	1943
Aor51HI	AGCGCT	1 cut(s)	1547
AoxI	GGCC	5 cut(s)	37, 690, 2051, 2237, 2315
ApeKI	GCWGC	5 cut(s)	200, 659, 1436, 2096, 2170
ApoI	RAATTY	9 cut(s)	251, 929, 1026, 1047, 1471, 2125, 2284, 2527, 2615
AseI	ATTAAT	2 cut(s)	900, 908
Asp700I	GAANNNNTTC	2 cut(s)	1802, 2185
AspLEI	GCGC	4 cut(s)	117, 1023, 1548, 2579
AspS9I	GGNCC	4 cut(s)	2024, 2237, 2316, 2669
AsuC2I	CCSGG	2 cut(s)	1164, 2064
AsuHPI	GGTGA	4 cut(s)	610, 977, 2360, 2698
AvaI	CYCGRG	1 cut(s)	1943
AvaII	GGWCC	2 cut(s)	2024, 2669
AxyI	CCTNAGG	2 cut(s)	2298, 2721
BaeI	ACNNNNGTAYC	2 cut(s)	297, 330
BanI	GGYRCC	1 cut(s)	2621
BanII	GRGCYC	2 cut(s)	1045, 2326
BbsI	GAAGAC	1 cut(s)	2022
Bbv12I	GWGCWC	4 cut(s)	348, 456, 1453, 2326
BbvCI	CCTCAGC	1 cut(s)	216
BbvI	GCAGC	5 cut(s)	187, 671, 1423, 2108, 2182
BccI	CCATC	7 cut(s)	140, 253, 677, 1495, 1522, 2152, 2248
BceAI	ACGGC	2 cut(s)	22, 52
BcgI	CGANNNNNNTGC	2 cut(s)	167, 201
BciT130I	CCWGG	5 cut(s)	324, 612, 2494, 2517, 2747
BciVI	GTATCC	1 cut(s)	2528
BclI	TGATCA	3 cut(s)	94, 1411, 1953
BcnI	CCSGG	2 cut(s)	1164, 2064
BcoDI	GTCTC	2 cut(s)	1072, 2502
BfaI	CTAG	3 cut(s)	1361, 2136, 2313
BfmI	CTRYAG	2 cut(s)	1914, 2502
BfoI	RGCGCY	3 cut(s)	1024, 1549, 2580
BfuAI	ACCTGC	2 cut(s)	52, 2674
BfuI	GTATCC	1 cut(s)	2528
BglII	AGATCT	2 cut(s)	541, 1357
BisI	GCNGC	7 cut(s)	201, 213, 660, 690, 1437, 2097, 2171
BlsI	GCNGC	7 cut(s)	202, 214, 661, 691, 1438, 2098, 2172
Bme1390I	CCNGG	7 cut(s)	324, 612, 1164, 2064, 2494, 2517, 2747
Bme18I	GGWCC	2 cut(s)	2024, 2669
BmeT110I	CYCGRG	1 cut(s)	1943
BmgBI	CACGTC	1 cut(s)	2714
BmgT120I	GGNCC	4 cut(s)	2024, 2237, 2316, 2669
BmiI	GGNNCC	5 cut(s)	1119, 1161, 1426, 2026, 2623
BmrFI	CCNGG	7 cut(s)	324, 612, 1164, 2064, 2494, 2517, 2747
BmrI	ACTGGG	1 cut(s)	2463
BmsI	GCATC	7 cut(s)	199, 418, 526, 949, 1653, 2313, 2656
BmuI	ACTGGG	1 cut(s)	2463
BoxI	GACNNNNGTC	1 cut(s)	2022
BpiI	GAAGAC	1 cut(s)	2022
BpmI	CTGGAG	3 cut(s)	306, 687, 1104
Bpu10I	CCTNAGC	1 cut(s)	216
BpuMI	CCSGG	2 cut(s)	1164, 2064
BsaBI	GATNNNNATC	1 cut(s)	540
BsaHI	GRCGYC	2 cut(s)	1703, 2522
BsaI	GGTCTC	1 cut(s)	2502
BsaJI	CCNNGG	4 cut(s)	394, 1291, 1944, 2516
BsaWI	WCCGGW	1 cut(s)	2657
BsaXI	ACNNNNNCTCC	4 cut(s)	2482, 2512, 2701, 2731
Bsc4I	CCNNNNNNNGG	7 cut(s)	1859, 1946, 2150, 2279, 2531, 2631, 2738
Bse118I	RCCGGY	1 cut(s)	1114
Bse1I	ACTGG	5 cut(s)	704, 1000, 1121, 2213, 2458
Bse21I	CCTNAGG	2 cut(s)	2298, 2721
Bse3DI	GCAATG	3 cut(s)	856, 1316, 1563
Bse8I	GATNNNNATC	1 cut(s)	540
BseBI	CCWGG	5 cut(s)	324, 612, 2494, 2517, 2747
BseDI	CCNNGG	4 cut(s)	394, 1291, 1944, 2516
BseGI	GGATG	8 cut(s)	16, 28, 541, 823, 1693, 1929, 2144, 2463
BseJI	GATNNNNATC	1 cut(s)	540
BseLI	CCNNNNNNNGG	7 cut(s)	1859, 1946, 2150, 2279, 2531, 2631, 2738
BseMI	GCAATG	3 cut(s)	856, 1316, 1563
BseMII	CTCAG	7 cut(s)	207, 363, 1179, 1619, 1809, 2312, 2735
BseNI	ACTGG	5 cut(s)	704, 1000, 1121, 2213, 2458
BseRI	GAGGAG	2 cut(s)	1229, 2709
BseX3I	CGGCCG	2 cut(s)	37, 690
BseXI	GCAGC	5 cut(s)	187, 671, 1423, 2108, 2182
BseYI	CCCAGC	1 cut(s)	2234
BsgI	GTGCAG	2 cut(s)	2363, 2585
Bsh1285I	CGRYCG	4 cut(s)	40, 394, 479, 693
BshFI	GGCC	5 cut(s)	39, 692, 2053, 2239, 2317
BshNI	GGYRCC	1 cut(s)	2621
BsiEI	CGRYCG	4 cut(s)	40, 394, 479, 693
BsiHKAI	GWGCWC	4 cut(s)	348, 456, 1453, 2326
BsiHKCI	CYCGRG	1 cut(s)	1943
BsiSI	CCGG	4 cut(s)	1115, 1163, 2064, 2658
BslFI	GGGAC	4 cut(s)	280, 1728, 2010, 2533
BslI	CCNNNNNNNGG	7 cut(s)	1859, 1946, 2150, 2279, 2531, 2631, 2738
BsmAI	GTCTC	2 cut(s)	1072, 2502
BsmFI	GGGAC	4 cut(s)	280, 1728, 2010, 2533
BsnI	GGCC	5 cut(s)	39, 692, 2053, 2239, 2317
Bso31I	GGTCTC	1 cut(s)	2502
BsoBI	CYCGRG	1 cut(s)	1943
Bsp1286I	GDGCHC	5 cut(s)	348, 456, 1045, 1453, 2326
BspANI	GGCC	5 cut(s)	39, 692, 2053, 2239, 2317
BspCNI	CTCAG	7 cut(s)	208, 362, 1180, 1618, 1810, 2311, 2734
BspLI	GGNNCC	5 cut(s)	1119, 1161, 1426, 2026, 2623
BspMI	ACCTGC	2 cut(s)	52, 2674
BspPI	GGATC	4 cut(s)	497, 1478, 2169, 2612
BspQI	GCTCTTC	4 cut(s)	612, 1101, 1458, 2586
BspT107I	GGYRCC	1 cut(s)	2621
BspTNI	GGTCTC	1 cut(s)	2502
BsrDI	GCAATG	3 cut(s)	856, 1316, 1563
BsrFI	RCCGGY	1 cut(s)	1114
BsrI	ACTGG	5 cut(s)	704, 1000, 1121, 2213, 2458
BssAI	RCCGGY	1 cut(s)	1114
BssECI	CCNNGG	4 cut(s)	394, 1291, 1944, 2516
BssNI	GRCGYC	2 cut(s)	1703, 2522
BssT1I	CCWWGG	1 cut(s)	1291
Bst2UI	CCWGG	5 cut(s)	324, 612, 2494, 2517, 2747
Bst4CI	ACNGT	5 cut(s)	395, 1880, 2083, 2385, 2436
BstACI	GRCGYC	2 cut(s)	1703, 2522
BstAPI	GCANNNNNTGC	2 cut(s)	209, 2563
BstC8I	GCNNGC	6 cut(s)	442, 555, 1041, 1056, 1544, 1602
BstDEI	CTNAG	8 cut(s)	216, 349, 590, 1188, 1605, 1818, 2298, 2721
BstDSI	CCRYGG	1 cut(s)	394
BstF5I	GGATG	8 cut(s)	16, 28, 541, 823, 1693, 1929, 2144, 2463
BstH2I	RGCGCY	3 cut(s)	1024, 1549, 2580
BstHHI	GCGC	4 cut(s)	117, 1023, 1548, 2579
BstMAI	GTCTC	2 cut(s)	1072, 2502
BstMCI	CGRYCG	4 cut(s)	40, 394, 479, 693
BstMWI	GCNNNNNNNGC	7 cut(s)	161, 209, 218, 437, 1340, 1672, 2563
BstNI	CCWGG	5 cut(s)	324, 612, 2494, 2517, 2747
BstPAI	GACNNNNGTC	1 cut(s)	2022
BstSCI	CCNGG	7 cut(s)	322, 610, 1162, 2062, 2492, 2515, 2745
BstSFI	CTRYAG	2 cut(s)	1914, 2502
BstV1I	GCAGC	5 cut(s)	187, 671, 1423, 2108, 2182
BstV2I	GAAGAC	1 cut(s)	2022
BstX2I	RGATCY	2 cut(s)	541, 1357
BstYI	RGATCY	2 cut(s)	541, 1357
BstZI	CGGCCG	2 cut(s)	37, 690
Bsu36I	CCTNAGG	2 cut(s)	2298, 2721
BsuI	GTATCC	1 cut(s)	2528
BsuRI	GGCC	5 cut(s)	39, 692, 2053, 2239, 2317
BtgI	CCRYGG	1 cut(s)	394
BtrI	CACGTC	1 cut(s)	2714
BtsCI	GGATG	8 cut(s)	16, 28, 541, 823, 1693, 1929, 2144, 2463
BtsIMutI	CAGTG	2 cut(s)	954, 1128
BveI	ACCTGC	2 cut(s)	52, 2674
Cac8I	GCNNGC	6 cut(s)	442, 555, 1041, 1056, 1544, 1602
CfoI	GCGC	4 cut(s)	117, 1023, 1548, 2579
Cfr10I	RCCGGY	1 cut(s)	1114
Cfr13I	GGNCC	4 cut(s)	2024, 2237, 2316, 2669
CseI	GACGC	3 cut(s)	1692, 2040, 2530
CsiI	ACCWGGT	1 cut(s)	2492
Csp6I	GTAC	2 cut(s)	1720, 2437
CspCI	CAANNNNNGTGG	2 cut(s)	376, 411
CviQI	GTAC	2 cut(s)	1720, 2437
DdeI	CTNAG	8 cut(s)	216, 349, 590, 1188, 1605, 1818, 2298, 2721
DraI	TTTAAA	2 cut(s)	379, 1402
DrdI	GACNNNNNNGTC	1 cut(s)	648
DseDI	GACNNNNNNGTC	1 cut(s)	648
EaeI	YGGCCR	2 cut(s)	37, 690
EagI	CGGCCG	2 cut(s)	37, 690
EciI	GGCGGA	2 cut(s)	236, 2682
Ecl136II	GAGCTC	1 cut(s)	2324
EclXI	CGGCCG	2 cut(s)	37, 690
Eco130I	CCWWGG	1 cut(s)	1291
Eco24I	GRGCYC	2 cut(s)	1045, 2326
Eco31I	GGTCTC	1 cut(s)	2502
Eco32I	GATATC	1 cut(s)	1987
Eco47I	GGWCC	2 cut(s)	2024, 2669
Eco47III	AGCGCT	1 cut(s)	1547
Eco52I	CGGCCG	2 cut(s)	37, 690
Eco53kI	GAGCTC	1 cut(s)	2324
Eco57I	CTGAAG	2 cut(s)	249, 285
Eco81I	CCTNAGG	2 cut(s)	2298, 2721
Eco88I	CYCGRG	1 cut(s)	1943
EcoICRI	GAGCTC	1 cut(s)	2324
EcoRI	GAATTC	2 cut(s)	1047, 2615
EcoRII	CCWGG	5 cut(s)	322, 610, 2492, 2515, 2745
EcoRV	GATATC	1 cut(s)	1987
EcoT14I	CCWWGG	1 cut(s)	1291
EcoT22I	ATGCAT	1 cut(s)	915
EcoT38I	GRGCYC	2 cut(s)	1045, 2326
ErhI	CCWWGG	1 cut(s)	1291
FalI	AAGNNNNNCTT	2 cut(s)	1084, 1116
FaqI	GGGAC	4 cut(s)	280, 1728, 2010, 2533
FauI	CCCGC	2 cut(s)	955, 1032
FauNDI	CATATG	3 cut(s)	867, 1903, 2674
FbaI	TGATCA	3 cut(s)	94, 1411, 1953
FblI	GTMKAC	1 cut(s)	407
Fnu4HI	GCNGC	7 cut(s)	201, 213, 660, 690, 1437, 2097, 2171
FokI	GGATG	8 cut(s)	3, 15, 548, 830, 1680, 1916, 2131, 2470
FriOI	GRGCYC	2 cut(s)	1045, 2326
Fsp4HI	GCNGC	7 cut(s)	201, 213, 660, 690, 1437, 2097, 2171
FspBI	CTAG	3 cut(s)	1361, 2136, 2313
GlaI	GCGC	4 cut(s)	116, 1022, 1547, 2578
GluI	GCNGC	7 cut(s)	201, 213, 660, 690, 1437, 2097, 2171
GsaI	CCCAGC	1 cut(s)	2238
GsuI	CTGGAG	3 cut(s)	306, 687, 1104
HaeII	RGCGCY	3 cut(s)	1024, 1549, 2580
HaeIII	GGCC	5 cut(s)	39, 692, 2053, 2239, 2317
HapII	CCGG	4 cut(s)	1115, 1163, 2064, 2658
HgaI	GACGC	3 cut(s)	1692, 2040, 2530
HhaI	GCGC	4 cut(s)	117, 1023, 1548, 2579
Hin1I	GRCGYC	2 cut(s)	1703, 2522
Hin6I	GCGC	4 cut(s)	115, 1021, 1546, 2577
HinP1I	GCGC	4 cut(s)	115, 1021, 1546, 2577
HincII	GTYRAC	2 cut(s)	617, 2218
HindII	GTYRAC	2 cut(s)	617, 2218
HindIII	AAGCTT	2 cut(s)	125, 1616
HinfI	GANTC	3 cut(s)	172, 1741, 1803
HpaII	CCGG	4 cut(s)	1115, 1163, 2064, 2658
HphI	GGTGA	4 cut(s)	610, 977, 2360, 2698
Hpy166II	GTNNAC	7 cut(s)	408, 577, 617, 641, 709, 1141, 2218
Hpy8I	GTNNAC	7 cut(s)	408, 577, 617, 641, 709, 1141, 2218
Hpy99I	CGWCG	4 cut(s)	38, 192, 1708, 2034
HpyAV	CCTTC	4 cut(s)	1253, 1698, 1857, 2471
HpyCH4III	ACNGT	5 cut(s)	395, 1880, 2083, 2385, 2436
HpyCH4IV	ACGT	5 cut(s)	66, 190, 435, 1839, 2713
HpyCH4V	TGCA	9 cut(s)	203, 539, 896, 913, 1439, 1858, 2344, 2512, 2566
HpyF10VI	GCNNNNNNNGC	7 cut(s)	161, 209, 218, 437, 1340, 1672, 2563
HpyF3I	CTNAG	8 cut(s)	216, 349, 590, 1188, 1605, 1818, 2298, 2721
HpySE526I	ACGT	5 cut(s)	66, 190, 435, 1839, 2713
Hsp92I	GRCGYC	2 cut(s)	1703, 2522
HspAI	GCGC	4 cut(s)	115, 1021, 1546, 2577
Ksp22I	TGATCA	3 cut(s)	94, 1411, 1953
LguI	GCTCTTC	4 cut(s)	612, 1101, 1458, 2586
LmnI	GCTCC	5 cut(s)	1123, 1159, 1339, 2066, 2329
Lsp1109I	GCAGC	5 cut(s)	187, 671, 1423, 2108, 2182
LweI	GCATC	7 cut(s)	199, 418, 526, 949, 1653, 2313, 2656
MabI	ACCWGGT	1 cut(s)	2492
MaeI	CTAG	3 cut(s)	1361, 2136, 2313
MaeII	ACGT	5 cut(s)	66, 190, 435, 1839, 2713
MaeIII	GTNAC	3 cut(s)	1880, 1897, 2348
MfeI	CAATTG	1 cut(s)	2070
MflI	RGATCY	2 cut(s)	541, 1357
MhlI	GDGCHC	5 cut(s)	348, 456, 1045, 1453, 2326
MlyI	GAGTC	1 cut(s)	1750
MmeI	TCCRAC	2 cut(s)	1350, 1686
Mph1103I	ATGCAT	1 cut(s)	915
MroXI	GAANNNNTTC	2 cut(s)	1802, 2185
MslI	CAYNNNNRTG	3 cut(s)	110, 740, 1309
MspA1I	CMGCKG	3 cut(s)	662, 1436, 2234
MspI	CCGG	4 cut(s)	1115, 1163, 2064, 2658
MspR9I	CCNGG	7 cut(s)	324, 612, 1164, 2064, 2494, 2517, 2747
MunI	CAATTG	1 cut(s)	2070
MvaI	CCWGG	5 cut(s)	324, 612, 2494, 2517, 2747
MwoI	GCNNNNNNNGC	7 cut(s)	161, 209, 218, 437, 1340, 1672, 2563
NciI	CCSGG	2 cut(s)	1164, 2064
NdeI	CATATG	3 cut(s)	867, 1903, 2674
NlaIV	GGNNCC	5 cut(s)	1119, 1161, 1426, 2026, 2623
NmeAIII	GCCGAG	1 cut(s)	493
NmuCI	GTSAC	1 cut(s)	2348
NsiI	ATGCAT	1 cut(s)	915
OliI	CACNNNNGTG	1 cut(s)	110
PaqCI	CACCTGC	1 cut(s)	2674
PciSI	GCTCTTC	4 cut(s)	612, 1101, 1458, 2586
PcsI	WCGNNNNNNNCGW	2 cut(s)	187, 441
PdmI	GAANNNNTTC	2 cut(s)	1802, 2185
PfeI	GAWTC	2 cut(s)	172, 1803
PflMI	CCANNNNNTGG	3 cut(s)	2150, 2279, 2738
PkrI	GCNGC	7 cut(s)	202, 214, 661, 691, 1438, 2098, 2172
Ple19I	CGATCG	1 cut(s)	479
PleI	GAGTC	1 cut(s)	1749
PpsI	GAGTC	1 cut(s)	1749
PshAI	GACNNNNGTC	1 cut(s)	2022
PshBI	ATTAAT	2 cut(s)	900, 908
Psp124BI	GAGCTC	1 cut(s)	2326
Psp1406I	AACGTT	1 cut(s)	435
Psp6I	CCWGG	5 cut(s)	322, 610, 2492, 2515, 2745
PspFI	CCCAGC	1 cut(s)	2234
PspGI	CCWGG	5 cut(s)	322, 610, 2492, 2515, 2745
PspN4I	GGNNCC	5 cut(s)	1119, 1161, 1426, 2026, 2623
PspPI	GGNCC	4 cut(s)	2024, 2237, 2316, 2669
PsuI	RGATCY	2 cut(s)	541, 1357
PvuI	CGATCG	1 cut(s)	479
PvuII	CAGCTG	3 cut(s)	662, 1436, 2234
RsaI	GTAC	2 cut(s)	1721, 2438
RsaNI	GTAC	2 cut(s)	1720, 2437
RseI	CAYNNNNRTG	3 cut(s)	110, 740, 1309
SacI	GAGCTC	1 cut(s)	2326
SapI	GCTCTTC	4 cut(s)	612, 1101, 1458, 2586
SatI	GCNGC	7 cut(s)	201, 213, 660, 690, 1437, 2097, 2171
Sau96I	GGNCC	4 cut(s)	2024, 2237, 2316, 2669
SchI	GAGTC	1 cut(s)	1750
ScrFI	CCNGG	7 cut(s)	324, 612, 1164, 2064, 2494, 2517, 2747
SduI	GDGCHC	5 cut(s)	348, 456, 1045, 1453, 2326
SexAI	ACCWGGT	1 cut(s)	2492
SfaNI	GCATC	7 cut(s)	199, 418, 526, 949, 1653, 2313, 2656
SfcI	CTRYAG	2 cut(s)	1914, 2502
SinI	GGWCC	2 cut(s)	2024, 2669
SmiI	ATTTAAAT	1 cut(s)	379
SmiMI	CAYNNNNRTG	3 cut(s)	110, 740, 1309
SspI	AATATT	3 cut(s)	81, 365, 755
SspMI	CTAG	3 cut(s)	1361, 2136, 2313
SstI	GAGCTC	1 cut(s)	2326
StyD4I	CCNGG	7 cut(s)	322, 610, 1162, 2062, 2492, 2515, 2745
StyI	CCWWGG	1 cut(s)	1291
SwaI	ATTTAAAT	1 cut(s)	379
TaaI	ACNGT	5 cut(s)	395, 1880, 2083, 2385, 2436
TaiI	ACGT	5 cut(s)	69, 193, 438, 1842, 2716
TaqI	TCGA	4 cut(s)	187, 1045, 1651, 2104
TatI	WGTACW	1 cut(s)	1719
TauI	GCSGC	2 cut(s)	215, 692
TfiI	GAWTC	2 cut(s)	172, 1803
TscAI	CASTG	2 cut(s)	961, 1128
TseFI	GTSAC	1 cut(s)	2348
TseI	GCWGC	5 cut(s)	200, 659, 1436, 2096, 2170
Tsp45I	GTSAC	1 cut(s)	2348
TspGWI	ACGGA	3 cut(s)	1649, 1997, 2252
TspRI	CASTG	2 cut(s)	961, 1128
Van91I	CCANNNNNTGG	3 cut(s)	2150, 2279, 2738
VpaK11BI	GGWCC	2 cut(s)	2024, 2669
VspI	ATTAAT	2 cut(s)	900, 908
XapI	RAATTY	9 cut(s)	251, 929, 1026, 1047, 1471, 2125, 2284, 2527, 2615
XbaI	TCTAGA	1 cut(s)	1360
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2598
XmiI	GTMKAC	1 cut(s)	407
XmnI	GAANNNNTTC	2 cut(s)	1802, 2185
XspI	CTAG	3 cut(s)	1361, 2136, 2313
Zsp2I	ATGCAT	1 cut(s)	915

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.