Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0041263.1

Orthogroup ID

OG0007016

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 824

Gene Structure 823 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0041263.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 273 bp

atgtttactttttggccattgtgcgagctcactagtgatgctactcattatttcaactctttcagtgttggaatgaatggattcctttggttatctgagaggaatggcattagaaacgtaatcccttcccctgtgcatggttttcccaacatagactgtaacaaagtcttaaatgttacatatgttggccctgcagctcaaaaacacagcccagaacctcccgagggtgtgatcatgcccagaaaggttgtaaaacctacggatatcaaacct

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000291 GO:0000902 GO:0000932 GO:0000956 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003824 GO:0004518 GO:0004527 GO:0004532 GO:0004534 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005844 GO:0006139 GO:0006401 GO:0006402 GO:0006725 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0008409 GO:0009056 GO:0009057 GO:0009266 GO:0009408 GO:0009628 GO:0009653 GO:0009826 GO:0009888 GO:0009892 GO:0009987 GO:0010087 GO:0010286 GO:0010468 GO:0010494 GO:0010586 GO:0010587 GO:0010605 GO:0010629 GO:0016043 GO:0016049 GO:0016070 GO:0016071 GO:0016787 GO:0016788 GO:0016796 GO:0016896 GO:0019222 GO:0019439 GO:0031086 GO:0031087 GO:0032502 GO:0032989 GO:0032991 GO:0033554 GO:0034605 GO:0034641 GO:0034655 GO:0034660 GO:0034661 GO:0035770 GO:0036464 GO:0040007 GO:0040029 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046700 GO:0048519 GO:0048589 GO:0048856 GO:0048869 GO:0050789 GO:0050896 GO:0051301 GO:0051716 GO:0060255 GO:0060560 GO:0065007 GO:0070370 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0090501 GO:0090503 GO:0097159 GO:0140098 GO:1901360 GO:1901361 GO:1901363 GO:1901575 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03008 ko03018 ko04016 map03008 map03018 map04016

Pfam Domains

Protein Families

XRN_N zf-CCHC

Protein Analysis

91

Amino Acids

10.18

Weight (kDa)

7.83

Isoelectric Point (pI)

49.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007016)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G54490 AT1G54490
fragaria_vesca	FvH4_6g03690 FvH4_6g03690
malus_domestica	MD04G1219200.v1.1 MD12G1236200.v1.1
prunus_persica	Prupe.6G338500_v2.0.a1 Prupe.6G338500_v2.0.a1
pyrus_communis	pycom04g19450 pycom12g21730
rosa_chinensis	RchiOBHm_Chr3g0452231
rosa_laevigata	RLG00000025615
rosa_multiflora	Rmu_sc0037132.1_g000001 Rmu_sc0041263.1_g000001
rosa_roxburghii	Rroxscaffold_164G00435930 Rroxscaffold_6G00429350
rosa_rugosa	Rorug02G0639400
rosa_samantha	Rh3AG041300 Rh3BG043000 Rh3BG043200 Rh3CG041400 Rh3CG041600 Rh3DG042300 Rh3DG042500
rosa_wichuraiana	Rw3G003160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	14
AfiI	CCNNNNNNNGG	2 cut(s)	137, 224
AgsI	TTSAA	1 cut(s)	55
AhlI	ACTAGT	1 cut(s)	32
AluBI	AGCT	2 cut(s)	28, 197
AluI	AGCT	2 cut(s)	28, 197
Alw21I	GWGCWC	1 cut(s)	30
Ama87I	CYCGRG	1 cut(s)	221
AoxI	GGCC	2 cut(s)	14, 187
ApeKI	GCWGC	1 cut(s)	194
Asp700I	GAANNNNTTC	1 cut(s)	80
AspS9I	GGNCC	1 cut(s)	188
AvaI	CYCGRG	1 cut(s)	221
BalI	TGGCCA	1 cut(s)	16
BanII	GRGCYC	1 cut(s)	30
Bbv12I	GWGCWC	1 cut(s)	30
BbvI	GCAGC	1 cut(s)	206
BclI	TGATCA	1 cut(s)	231
BcuI	ACTAGT	1 cut(s)	32
BfaI	CTAG	1 cut(s)	33
BfmI	CTRYAG	1 cut(s)	192
BisI	GCNGC	1 cut(s)	195
BlsI	GCNGC	1 cut(s)	196
BmeT110I	CYCGRG	1 cut(s)	221
BmgT120I	GGNCC	1 cut(s)	188
BmsI	GCATC	1 cut(s)	28
BsaJI	CCNNGG	1 cut(s)	222
Bsc4I	CCNNNNNNNGG	2 cut(s)	137, 224
BseDI	CCNNGG	1 cut(s)	222
BseLI	CCNNNNNNNGG	2 cut(s)	137, 224
BseMII	CTCAG	1 cut(s)	87
BseXI	GCAGC	1 cut(s)	206
BshFI	GGCC	2 cut(s)	16, 189
BsiHKAI	GWGCWC	1 cut(s)	30
BsiHKCI	CYCGRG	1 cut(s)	221
BslI	CCNNNNNNNGG	2 cut(s)	137, 224
BsnI	GGCC	2 cut(s)	16, 189
BsoBI	CYCGRG	1 cut(s)	221
Bsp1286I	GDGCHC	1 cut(s)	30
Bsp143I	GATC	1 cut(s)	231
BspANI	GGCC	2 cut(s)	16, 189
BspCNI	CTCAG	1 cut(s)	88
BspMAI	CTGCAG	1 cut(s)	196
BssECI	CCNNGG	1 cut(s)	222
BssMI	GATC	1 cut(s)	231
Bst4CI	ACNGT	1 cut(s)	158
BstC8I	GCNNGC	1 cut(s)	26
BstDEI	CTNAG	1 cut(s)	96
BstKTI	GATC	1 cut(s)	234
BstMBI	GATC	1 cut(s)	231
BstSFI	CTRYAG	1 cut(s)	192
BstV1I	GCAGC	1 cut(s)	206
BsuRI	GGCC	2 cut(s)	16, 189
BtsIMutI	CAGTG	1 cut(s)	70
Cac8I	GCNNGC	1 cut(s)	26
Cfr13I	GGNCC	1 cut(s)	188
CviAII	CATG	2 cut(s)	137, 235
CviJI	RGCY	5 cut(s)	16, 28, 189, 197, 210
CviKI_1	RGCY	5 cut(s)	16, 28, 189, 197, 210
DdeI	CTNAG	1 cut(s)	96
DpnI	GATC	1 cut(s)	233
DpnII	GATC	1 cut(s)	231
EaeI	YGGCCR	1 cut(s)	14
Ecl136II	GAGCTC	1 cut(s)	28
Eco24I	GRGCYC	1 cut(s)	30
Eco32I	GATATC	1 cut(s)	265
Eco53kI	GAGCTC	1 cut(s)	28
Eco88I	CYCGRG	1 cut(s)	221
EcoICRI	GAGCTC	1 cut(s)	28
EcoRV	GATATC	1 cut(s)	265
EcoT38I	GRGCYC	1 cut(s)	30
FaeI	CATG	2 cut(s)	140, 238
FaiI	YATR	5 cut(s)	138, 152, 181, 183, 236
FatI	CATG	2 cut(s)	136, 234
FauNDI	CATATG	1 cut(s)	181
FbaI	TGATCA	1 cut(s)	231
Fnu4HI	GCNGC	1 cut(s)	195
FriOI	GRGCYC	1 cut(s)	30
Fsp4HI	GCNGC	1 cut(s)	195
FspBI	CTAG	1 cut(s)	33
GluI	GCNGC	1 cut(s)	195
HaeIII	GGCC	2 cut(s)	16, 189
Hin1II	CATG	2 cut(s)	140, 238
HinfI	GANTC	1 cut(s)	81
Hpy166II	GTNNAC	1 cut(s)	6
Hpy188I	TCNGA	1 cut(s)	97
Hpy188III	TCNNGA	1 cut(s)	221
Hpy8I	GTNNAC	1 cut(s)	6
HpyAV	CCTTC	1 cut(s)	135
HpyCH4III	ACNGT	1 cut(s)	158
HpyCH4IV	ACGT	1 cut(s)	117
HpyCH4V	TGCA	2 cut(s)	136, 194
HpyF3I	CTNAG	1 cut(s)	96
HpySE526I	ACGT	1 cut(s)	117
Hsp92II	CATG	2 cut(s)	140, 238
Ksp22I	TGATCA	1 cut(s)	231
Kzo9I	GATC	1 cut(s)	231
LpnPI	CCDG	4 cut(s)	144, 204, 225, 253
Lsp1109I	GCAGC	1 cut(s)	206
LweI	GCATC	1 cut(s)	28
MaeI	CTAG	1 cut(s)	33
MaeII	ACGT	1 cut(s)	117
MaeIII	GTNAC	2 cut(s)	158, 175
MalI	GATC	1 cut(s)	233
MboI	GATC	1 cut(s)	231
MhlI	GDGCHC	1 cut(s)	30
MlsI	TGGCCA	1 cut(s)	16
MluNI	TGGCCA	1 cut(s)	16
MmeI	TCCRAC	1 cut(s)	49
MnlI	CCTC	3 cut(s)	93, 217, 228
Mox20I	TGGCCA	1 cut(s)	16
MroXI	GAANNNNTTC	1 cut(s)	80
MscI	TGGCCA	1 cut(s)	16
MseI	TTAA	1 cut(s)	170
Msp20I	TGGCCA	1 cut(s)	16
NdeI	CATATG	1 cut(s)	181
NdeII	GATC	1 cut(s)	231
NlaIII	CATG	2 cut(s)	140, 238
PdmI	GAANNNNTTC	1 cut(s)	80
PfeI	GAWTC	1 cut(s)	81
PkrI	GCNGC	1 cut(s)	196
Psp124BI	GAGCTC	1 cut(s)	30
PspPI	GGNCC	1 cut(s)	188
PstI	CTGCAG	1 cut(s)	196
SacI	GAGCTC	1 cut(s)	30
SaqAI	TTAA	1 cut(s)	170
SatI	GCNGC	1 cut(s)	195
Sau3AI	GATC	1 cut(s)	231
Sau96I	GGNCC	1 cut(s)	188
SduI	GDGCHC	1 cut(s)	30
SetI	ASST	6 cut(s)	30, 120, 199, 220, 249, 259
SfaNI	GCATC	1 cut(s)	28
SfcI	CTRYAG	1 cut(s)	192
SpeI	ACTAGT	1 cut(s)	32
SspMI	CTAG	1 cut(s)	33
SstI	GAGCTC	1 cut(s)	30
TaaI	ACNGT	1 cut(s)	158
TaiI	ACGT	1 cut(s)	120
TfiI	GAWTC	1 cut(s)	81
Tru1I	TTAA	1 cut(s)	170
Tru9I	TTAA	1 cut(s)	170
TscAI	CASTG	1 cut(s)	70
TseI	GCWGC	1 cut(s)	194
TspDTI	ATGAA	1 cut(s)	89
TspRI	CASTG	1 cut(s)	70
XmnI	GAANNNNTTC	1 cut(s)	80
XspI	CTAG	1 cut(s)	33

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.