Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0007516

Physical Location & Seq

Genomic Coordinates Forward (+)

3731596 .. 3732027

Gene Structure 432 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g06391.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 351 bp

ATGCAGTCCGCCAAGGGTGTCAATGCTGCCAAGCATTTCACCAACATGTTTGCTGGTTTGATGGAAGATGGCTACTTCAAAGCAGCTATGGAGATCAAGAAGATGACCTTGGACAAAGGGGTTACCCGATGTGGTTATCCAGACAGGCCTGATGGAGGCCTTTGCCTGGCACTTGCTGCTGATGTTAACTTCCTCGATGATGCTAAGAAGTACTGGTTGGAAATGGGGAGAAAGAGTAAGGCACCCTATTATTCGACCTACATAACACTGAGTAACACTTTGAAAGATGCCGGTAAGGATGATGAGGACTTCACCACGGCAGCTTATAGCCCAACCATAAGAGGCCTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

117

Amino Acids

12.81

Weight (kDa)

7.7

Isoelectric Point (pI)

16.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0007516)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g06391
rosa_chinensis	RchiOBHm_Chr0c19g0499981 RchiOBHm_Chr2g0121371 RchiOBHm_Chr2g0124851 RchiOBHm_Chr2g0125661 RchiOBHm_Chr2g0131171 RchiOBHm_Chr2g0134161 RchiOBHm_Chr2g0165291 RchiOBHm_Chr3g0462421 RchiOBHm_Chr3g0497621 RchiOBHm_Chr4g0401911 RchiOBHm_Chr5g0067131 RchiOBHm_Chr7g0194981 RchiOBHm_Chr7g0195241 RchiOBHm_Chr7g0200621
rosa_laevigata	RLG00000025358
rosa_multiflora	Rmu_sc0000215.1_g000033 Rmu_sc0010428.1_g000007 Rmu_sc0016199.1_g000006
rosa_roxburghii	Rroxscaffold_5G00343890 Rroxscaffold_5G00387740 Rroxscaffold_6G00424250
rosa_rugosa	Rorug02G0437900
rosa_samantha	Rh3DG069600
rosa_wichuraiana	Rw3G005320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	241
AciI	CCGC	1 cut(s)	9
AfaI	GTAC	1 cut(s)	212
AfiI	CCNNNNNNNGG	2 cut(s)	155, 166
AflIII	ACRYGT	1 cut(s)	45
AgsI	TTSAA	2 cut(s)	79, 283
AjnI	CCWGG	1 cut(s)	165
AjuI	GAANNNNNNNTTGG	4 cut(s)	92, 124, 200, 232
AluBI	AGCT	2 cut(s)	86, 323
AluI	AGCT	2 cut(s)	86, 323
AoxI	GGCC	3 cut(s)	146, 157, 343
ApeKI	GCWGC	4 cut(s)	26, 83, 176, 320
AsuHPI	GGTGA	2 cut(s)	31, 304
BanI	GGYRCC	1 cut(s)	241
BbvI	GCAGC	4 cut(s)	13, 95, 163, 332
BccI	CCATC	3 cut(s)	55, 62, 146
BceAI	ACGGC	1 cut(s)	333
BciT130I	CCWGG	1 cut(s)	167
BisI	GCNGC	4 cut(s)	27, 84, 177, 321
BlsI	GCNGC	4 cut(s)	28, 85, 178, 322
BmcAI	AGTACT	1 cut(s)	212
Bme1390I	CCNGG	1 cut(s)	167
BmiI	GGNNCC	1 cut(s)	243
BmrFI	CCNGG	1 cut(s)	167
BmsI	GCATC	2 cut(s)	190, 277
BsaJI	CCNNGG	3 cut(s)	12, 108, 315
BsaXI	ACNNNNNCTCC	2 cut(s)	220, 250
Bsc4I	CCNNNNNNNGG	2 cut(s)	155, 166
Bse118I	RCCGGY	1 cut(s)	290
Bse1I	ACTGG	1 cut(s)	218
BseBI	CCWGG	1 cut(s)	167
BseDI	CCNNGG	3 cut(s)	12, 108, 315
BseGI	GGATG	1 cut(s)	304
BseLI	CCNNNNNNNGG	2 cut(s)	155, 166
BseMII	CTCAG	1 cut(s)	260
BseNI	ACTGG	1 cut(s)	218
BseXI	GCAGC	4 cut(s)	13, 95, 163, 332
BshFI	GGCC	3 cut(s)	148, 159, 345
BshNI	GGYRCC	1 cut(s)	241
BsiSI	CCGG	1 cut(s)	291
BslI	CCNNNNNNNGG	2 cut(s)	155, 166
BsnI	GGCC	3 cut(s)	148, 159, 345
Bsp143I	GATC	1 cut(s)	93
BspACI	CCGC	1 cut(s)	9
BspANI	GGCC	3 cut(s)	148, 159, 345
BspCNI	CTCAG	1 cut(s)	261
BspLI	GGNNCC	1 cut(s)	243
BspT107I	GGYRCC	1 cut(s)	241
BsrFI	RCCGGY	1 cut(s)	290
BsrI	ACTGG	1 cut(s)	218
BssAI	RCCGGY	1 cut(s)	290
BssECI	CCNNGG	3 cut(s)	12, 108, 315
BssMI	GATC	1 cut(s)	93
BssT1I	CCWWGG	2 cut(s)	12, 108
Bst2UI	CCWGG	1 cut(s)	167
BstAPI	GCANNNNNTGC	1 cut(s)	176
BstDEI	CTNAG	2 cut(s)	204, 269
BstDSI	CCRYGG	1 cut(s)	315
BstEII	GGTNACC	1 cut(s)	121
BstENI	CCTNNNNNAGG	1 cut(s)	153
BstF5I	GGATG	1 cut(s)	304
BstKTI	GATC	1 cut(s)	96
BstMBI	GATC	1 cut(s)	93
BstMWI	GCNNNNNNNGC	1 cut(s)	176
BstNI	CCWGG	1 cut(s)	167
BstNSI	RCATGY	1 cut(s)	49
BstPI	GGTNACC	1 cut(s)	121
BstSCI	CCNGG	1 cut(s)	165
BstV1I	GCAGC	4 cut(s)	13, 95, 163, 332
BsuRI	GGCC	3 cut(s)	148, 159, 345
BtgI	CCRYGG	1 cut(s)	315
BtsCI	GGATG	1 cut(s)	304
BtsIMutI	CAGTG	1 cut(s)	266
Cfr10I	RCCGGY	1 cut(s)	290
Csp6I	GTAC	1 cut(s)	211
CviAII	CATG	1 cut(s)	46
CviJI	RGCY	7 cut(s)	72, 86, 148, 159, 323, 330, 345
CviKI_1	RGCY	7 cut(s)	72, 86, 148, 159, 323, 330, 345
CviQI	GTAC	1 cut(s)	211
DdeI	CTNAG	2 cut(s)	204, 269
DpnI	GATC	1 cut(s)	95
DpnII	GATC	1 cut(s)	93
Eco130I	CCWWGG	2 cut(s)	12, 108
Eco147I	AGGCCT	3 cut(s)	148, 159, 345
Eco91I	GGTNACC	1 cut(s)	121
EcoNI	CCTNNNNNAGG	1 cut(s)	153
EcoO65I	GGTNACC	1 cut(s)	121
EcoRII	CCWGG	1 cut(s)	165
EcoT14I	CCWWGG	2 cut(s)	12, 108
ErhI	CCWWGG	2 cut(s)	12, 108
FaeI	CATG	1 cut(s)	49
FaiI	YATR	5 cut(s)	47, 89, 263, 327, 338
FalI	AAGNNNNNCTT	2 cut(s)	92, 124
FatI	CATG	1 cut(s)	45
Fnu4HI	GCNGC	4 cut(s)	27, 84, 177, 321
FokI	GGATG	1 cut(s)	311
Fsp4HI	GCNGC	4 cut(s)	27, 84, 177, 321
GluI	GCNGC	4 cut(s)	27, 84, 177, 321
HaeIII	GGCC	3 cut(s)	148, 159, 345
HapII	CCGG	1 cut(s)	291
Hin1II	CATG	1 cut(s)	49
HincII	GTYRAC	1 cut(s)	187
HindII	GTYRAC	1 cut(s)	187
HpaI	GTTAAC	1 cut(s)	187
HpaII	CCGG	1 cut(s)	291
HphI	GGTGA	2 cut(s)	31, 304
Hpy166II	GTNNAC	1 cut(s)	187
Hpy188III	TCNNGA	2 cut(s)	97, 140
Hpy8I	GTNNAC	1 cut(s)	187
HpyCH4V	TGCA	1 cut(s)	4
HpyF10VI	GCNNNNNNNGC	1 cut(s)	176
HpyF3I	CTNAG	2 cut(s)	204, 269
Hsp92II	CATG	1 cut(s)	49
KspAI	GTTAAC	1 cut(s)	187
Kzo9I	GATC	1 cut(s)	93
LpnPI	CCDG	8 cut(s)	39, 130, 152, 153, 162, 179, 199, 304
Lsp1109I	GCAGC	4 cut(s)	13, 95, 163, 332
LweI	GCATC	2 cut(s)	190, 277
MaeIII	GTNAC	2 cut(s)	121, 272
MalI	GATC	1 cut(s)	95
MboI	GATC	1 cut(s)	93
MboII	GAAGA	2 cut(s)	77, 112
MmeI	TCCRAC	1 cut(s)	198
MnlI	CCTC	4 cut(s)	149, 203, 298, 335
MseI	TTAA	1 cut(s)	186
MslI	CAYNNNNRTG	1 cut(s)	44
MspI	CCGG	1 cut(s)	291
MspR9I	CCNGG	1 cut(s)	167
MvaI	CCWGG	1 cut(s)	167
MwoI	GCNNNNNNNGC	1 cut(s)	176
NdeII	GATC	1 cut(s)	93
NlaIII	CATG	1 cut(s)	49
NlaIV	GGNNCC	1 cut(s)	243
NspI	RCATGY	1 cut(s)	49
PceI	AGGCCT	3 cut(s)	148, 159, 345
PciI	ACATGT	1 cut(s)	45
PkrI	GCNGC	4 cut(s)	28, 85, 178, 322
PscI	ACATGT	1 cut(s)	45
Psp6I	CCWGG	1 cut(s)	165
PspEI	GGTNACC	1 cut(s)	121
PspGI	CCWGG	1 cut(s)	165
PspN4I	GGNNCC	1 cut(s)	243
RsaI	GTAC	1 cut(s)	212
RsaNI	GTAC	1 cut(s)	211
RseI	CAYNNNNRTG	1 cut(s)	44
SaqAI	TTAA	1 cut(s)	186
SatI	GCNGC	4 cut(s)	27, 84, 177, 321
Sau3AI	GATC	1 cut(s)	93
ScaI	AGTACT	1 cut(s)	212
ScrFI	CCNGG	1 cut(s)	167
SetI	ASST	4 cut(s)	88, 110, 260, 325
SfaNI	GCATC	2 cut(s)	190, 277
SmiMI	CAYNNNNRTG	1 cut(s)	44
SseBI	AGGCCT	3 cut(s)	148, 159, 345
SsiI	CCGC	1 cut(s)	9
StuI	AGGCCT	3 cut(s)	148, 159, 345
StyD4I	CCNGG	1 cut(s)	165
StyI	CCWWGG	2 cut(s)	12, 108
TaqI	TCGA	2 cut(s)	195, 254
TatI	WGTACW	1 cut(s)	210
Tru1I	TTAA	1 cut(s)	186
Tru9I	TTAA	1 cut(s)	186
TscAI	CASTG	1 cut(s)	273
TseI	GCWGC	4 cut(s)	26, 83, 176, 320
TspRI	CASTG	1 cut(s)	273
XagI	CCTNNNNNAGG	1 cut(s)	153
XceI	RCATGY	1 cut(s)	49
ZrmI	AGTACT	1 cut(s)	212

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.