RCHIOBHM_CHR0C19G0499981

No description available

Basic Information

Type: Sequence Only
Biological Identity
rosa_chinensis
Unknown
Physical Location & Seq
Reverse (-)
0 .. 0
1 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 156 bp
ATGAGCCTTCGACTTCTTCATAAAAAATGTTCCACTATGAGTGTAGATCATCCTGACAAATTTTCAGAGCTTTATTCCATGTGGTTGGGCCGGAAATGCTGCTGGACCTCTTACAGGTCCAGTTTTCCGGTTTACTTCTGTAGAAAATTGGGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

51

Amino Acids

6.11

Weight (kDa)

9.51

Isoelectric Point (pI)

50.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 59
AfiI CCNNNNNNNGG 1 cut(s) 114
AluBI AGCT 1 cut(s) 70
AluI AGCT 1 cut(s) 70
AoxI GGCC 1 cut(s) 88
ApeKI GCWGC 1 cut(s) 99
ApoI RAATTY 1 cut(s) 59
AspS9I GGNCC 3 cut(s) 88, 105, 117
AvaII GGWCC 2 cut(s) 105, 117
BbvI GCAGC 1 cut(s) 86
BfmI CTRYAG 1 cut(s) 139
BisI GCNGC 1 cut(s) 100
BlsI GCNGC 1 cut(s) 101
Bme18I GGWCC 2 cut(s) 105, 117
BmgT120I GGNCC 3 cut(s) 88, 105, 117
BsaWI WCCGGW 1 cut(s) 127
Bsc4I CCNNNNNNNGG 1 cut(s) 114
Bse1I ACTGG 1 cut(s) 120
BseGI GGATG 1 cut(s) 49
BseLI CCNNNNNNNGG 1 cut(s) 114
BseNI ACTGG 1 cut(s) 120
BseXI GCAGC 1 cut(s) 86
BshFI GGCC 1 cut(s) 90
BsiSI CCGG 2 cut(s) 91, 128
BslI CCNNNNNNNGG 1 cut(s) 114
BsnI GGCC 1 cut(s) 90
Bsp143I GATC 1 cut(s) 46
BspANI GGCC 1 cut(s) 90
BsrI ACTGG 1 cut(s) 120
BssMI GATC 1 cut(s) 46
BstENI CCTNNNNNAGG 1 cut(s) 112
BstF5I GGATG 1 cut(s) 49
BstKTI GATC 1 cut(s) 49
BstMBI GATC 1 cut(s) 46
BstMWI GCNNNNNNNGC 1 cut(s) 96
BstSFI CTRYAG 1 cut(s) 139
BstV1I GCAGC 1 cut(s) 86
BstXI CCANNNNNNTGG 1 cut(s) 85
BsuRI GGCC 1 cut(s) 90
BtsCI GGATG 1 cut(s) 49
Cfr13I GGNCC 3 cut(s) 88, 105, 117
CviAII CATG 1 cut(s) 79
CviJI RGCY 4 cut(s) 6, 70, 90, 153
CviKI_1 RGCY 4 cut(s) 6, 70, 90, 153
DpnI GATC 1 cut(s) 48
DpnII GATC 1 cut(s) 46
Eco47I GGWCC 2 cut(s) 105, 117
EcoNI CCTNNNNNAGG 1 cut(s) 112
FaeI CATG 1 cut(s) 82
FaiI YATR 3 cut(s) 21, 38, 80
FatI CATG 1 cut(s) 78
Fnu4HI GCNGC 1 cut(s) 100
FokI GGATG 1 cut(s) 36
Fsp4HI GCNGC 1 cut(s) 100
GluI GCNGC 1 cut(s) 100
HaeIII GGCC 1 cut(s) 90
HapII CCGG 2 cut(s) 91, 128
Hin1II CATG 1 cut(s) 82
HpaII CCGG 2 cut(s) 91, 128
Hpy166II GTNNAC 1 cut(s) 133
Hpy188I TCNGA 1 cut(s) 67
Hpy188III TCNNGA 1 cut(s) 53
Hpy8I GTNNAC 1 cut(s) 133
HpyAV CCTTC 1 cut(s) 17
HpyF10VI GCNNNNNNNGC 1 cut(s) 96
Hsp92II CATG 1 cut(s) 82
Kzo9I GATC 1 cut(s) 46
LpnPI CCDG 6 cut(s) 66, 88, 100, 104, 133, 141
Lsp1109I GCAGC 1 cut(s) 86
MalI GATC 1 cut(s) 48
MboI GATC 1 cut(s) 46
MboII GAAGA 1 cut(s) 8
MluCI AATT 2 cut(s) 59, 146
MnlI CCTC 1 cut(s) 118
MspI CCGG 2 cut(s) 91, 128
MwoI GCNNNNNNNGC 1 cut(s) 96
NdeII GATC 1 cut(s) 46
NlaIII CATG 1 cut(s) 82
PkrI GCNGC 1 cut(s) 101
PspPI GGNCC 3 cut(s) 88, 105, 117
SatI GCNGC 1 cut(s) 100
Sau3AI GATC 1 cut(s) 46
Sau96I GGNCC 3 cut(s) 88, 105, 117
SetI ASST 3 cut(s) 72, 110, 119
SfcI CTRYAG 1 cut(s) 139
SgeI CNNG 7 cut(s) 65, 91, 103, 115, 127, 132, 140
SinI GGWCC 2 cut(s) 105, 117
Sse9I AATT 2 cut(s) 59, 146
TaqI TCGA 1 cut(s) 10
TasI AATT 2 cut(s) 59, 146
TseI GCWGC 1 cut(s) 99
TspDTI ATGAA 1 cut(s) 8
VpaK11BI GGWCC 2 cut(s) 105, 117
XagI CCTNNNNNAGG 1 cut(s) 112
XapI RAATTY 1 cut(s) 59
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.