Rh3DG069600

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
Physical Location & Seq
Forward (+)
4732865 .. 4734106
1242 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG069600.1

Sequence Viewer

Length: 291 bp
ATGAAAGCAAGAGGCTTTAAGCCGGAGAAGGAGGTTGTGAGGGAGGTTCTTACAGCCACAAATACTGAAGCTGCTATGGTTGAAAGGGTCCTCAACTTTCTATTTGAGGACTCAGACGACGATGTCTTGCAGCAACTCTTGTCCTCTAAGATGCAATCCCCTGAGGGTGTCAATGCTGCCAAGCATTTCACCAAGATGTTTGCTGGTTTGATGGATGATGGCCCCTTCAAAGTGGCTATGGAGATCAAGAAGCTGAAGAAGGGTTTGATACCTGATGTGGATTTAGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

96

Amino Acids

10.73

Weight (kDa)

5.38

Isoelectric Point (pI)

29.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 122
AcuI CTGAAG 2 cut(s) 87, 275
AgsI TTSAA 2 cut(s) 83, 229
AluBI AGCT 2 cut(s) 71, 253
AluI AGCT 2 cut(s) 71, 253
AoxI GGCC 1 cut(s) 220
ApeKI GCWGC 3 cut(s) 71, 130, 176
AspS9I GGNCC 2 cut(s) 88, 221
AsuHPI GGTGA 1 cut(s) 181
AvaII GGWCC 1 cut(s) 88
AxyI CCTNAGG 1 cut(s) 162
BbvI GCAGC 3 cut(s) 58, 142, 163
BccI CCATC 2 cut(s) 205, 212
BisI GCNGC 3 cut(s) 72, 131, 177
BlsI GCNGC 3 cut(s) 73, 132, 178
Bme18I GGWCC 1 cut(s) 88
BmgT120I GGNCC 2 cut(s) 88, 221
BmiI GGNNCC 2 cut(s) 89, 223
BmsI GCATC 1 cut(s) 141
Bse21I CCTNAGG 1 cut(s) 162
BseGI GGATG 1 cut(s) 220
BseMII CTCAG 2 cut(s) 126, 153
BseXI GCAGC 3 cut(s) 58, 142, 163
BshFI GGCC 1 cut(s) 222
BsiSI CCGG 1 cut(s) 23
BsnI GGCC 1 cut(s) 222
Bsp143I GATC 1 cut(s) 243
BspANI GGCC 1 cut(s) 222
BspCNI CTCAG 2 cut(s) 125, 154
BspLI GGNNCC 2 cut(s) 89, 223
BssMI GATC 1 cut(s) 243
BstDEI CTNAG 3 cut(s) 112, 147, 162
BstF5I GGATG 1 cut(s) 220
BstKTI GATC 1 cut(s) 246
BstMBI GATC 1 cut(s) 243
BstV1I GCAGC 3 cut(s) 58, 142, 163
Bsu36I CCTNAGG 1 cut(s) 162
BsuRI GGCC 1 cut(s) 222
BtsCI GGATG 1 cut(s) 220
Cfr13I GGNCC 2 cut(s) 88, 221
CviJI RGCY 7 cut(s) 15, 22, 56, 71, 222, 236, 253
CviKI_1 RGCY 7 cut(s) 15, 22, 56, 71, 222, 236, 253
DdeI CTNAG 3 cut(s) 112, 147, 162
DpnI GATC 1 cut(s) 245
DpnII GATC 1 cut(s) 243
DrdI GACNNNNNNGTC 1 cut(s) 122
DseDI GACNNNNNNGTC 1 cut(s) 122
Eco47I GGWCC 1 cut(s) 88
Eco57I CTGAAG 2 cut(s) 87, 275
Eco81I CCTNAGG 1 cut(s) 162
EcoO109I RGGNCCY 1 cut(s) 88
FaiI YATR 2 cut(s) 77, 239
Fnu4HI GCNGC 3 cut(s) 72, 131, 177
FokI GGATG 1 cut(s) 227
Fsp4HI GCNGC 3 cut(s) 72, 131, 177
GluI GCNGC 3 cut(s) 72, 131, 177
HaeIII GGCC 1 cut(s) 222
HapII CCGG 1 cut(s) 23
HinfI GANTC 1 cut(s) 110
HpaII CCGG 1 cut(s) 23
HphI GGTGA 1 cut(s) 181
Hpy188I TCNGA 1 cut(s) 115
Hpy188III TCNNGA 1 cut(s) 247
Hpy99I CGWCG 1 cut(s) 122
HpyAV CCTTC 3 cut(s) 22, 235, 253
HpyCH4V TGCA 2 cut(s) 130, 154
HpyF3I CTNAG 3 cut(s) 112, 147, 162
Kzo9I GATC 1 cut(s) 243
LpnPI CCDG 4 cut(s) 36, 174, 189, 285
Lsp1109I GCAGC 3 cut(s) 58, 142, 163
LweI GCATC 1 cut(s) 141
MalI GATC 1 cut(s) 245
MboI GATC 1 cut(s) 243
MboII GAAGA 1 cut(s) 268
MlyI GAGTC 1 cut(s) 104
MnlI CCTC 8 cut(s) 5, 25, 33, 37, 100, 101, 154, 157
MseI TTAA 1 cut(s) 18
MslI CAYNNNNRTG 1 cut(s) 194
MspI CCGG 1 cut(s) 23
NdeII GATC 1 cut(s) 243
NlaIV GGNNCC 2 cut(s) 89, 223
PflFI GACNNNGTC 1 cut(s) 122
PkrI GCNGC 3 cut(s) 73, 132, 178
PleI GAGTC 1 cut(s) 104
PpsI GAGTC 1 cut(s) 104
PpuMI RGGWCCY 1 cut(s) 88
Psp5II RGGWCCY 1 cut(s) 88
PspN4I GGNNCC 2 cut(s) 89, 223
PspPI GGNCC 2 cut(s) 88, 221
PspPPI RGGWCCY 1 cut(s) 88
PsyI GACNNNGTC 1 cut(s) 122
RseI CAYNNNNRTG 1 cut(s) 194
SaqAI TTAA 1 cut(s) 18
SatI GCNGC 3 cut(s) 72, 131, 177
Sau3AI GATC 1 cut(s) 243
Sau96I GGNCC 2 cut(s) 88, 221
SchI GAGTC 1 cut(s) 104
SetI ASST 5 cut(s) 36, 48, 73, 255, 274
SfaNI GCATC 1 cut(s) 141
SinI GGWCC 1 cut(s) 88
SmiMI CAYNNNNRTG 1 cut(s) 194
Tru1I TTAA 1 cut(s) 18
Tru9I TTAA 1 cut(s) 18
TseI GCWGC 3 cut(s) 71, 130, 176
TspDTI ATGAA 1 cut(s) 17
Tth111I GACNNNGTC 1 cut(s) 122
VpaK11BI GGWCC 1 cut(s) 88
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.