RchiOBHm_Chr2g0134161

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0007516
Physical Location & Seq
Reverse (-)
51136455 .. 51136904
450 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ50521

Sequence Viewer

Length: 240 bp
ATGAAATGTTCCACTATGAGTGTAGATCATCCTGACAAATTTTCAGAGCTTTCATCCATGTGGTTGGGCCGAAAATGCTGCTGGACCTCTTACAGGTCCAGTTTTCCGGTTTTGCTTCTAATGGATCTGCAGAGTTTCAGCTCATTTCAAGTTCATTTGGTCAGGTGCCCGCTCCTTCTTCCTTGCTTGGCTCTGATTCTCCTAGCCGGAGTAAGAAAATATTCAAGGTTGACTTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

79

Amino Acids

9.09

Weight (kDa)

9.23

Isoelectric Point (pI)

53.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 165
AccBSI CCGCTC 1 cut(s) 172
AciI CCGC 1 cut(s) 170
AclWI GGATC 1 cut(s) 132
AcsI RAATTY 1 cut(s) 38
AfiI CCNNNNNNNGG 1 cut(s) 93
AgsI TTSAA 2 cut(s) 149, 225
AluBI AGCT 2 cut(s) 49, 141
AluI AGCT 2 cut(s) 49, 141
AlwI GGATC 1 cut(s) 132
AoxI GGCC 1 cut(s) 67
ApeKI GCWGC 1 cut(s) 78
ApoI RAATTY 1 cut(s) 38
Asp700I GAANNNNTTC 1 cut(s) 220
AspS9I GGNCC 3 cut(s) 67, 84, 96
AvaII GGWCC 2 cut(s) 84, 96
BaeGI GKGCMC 1 cut(s) 170
BanI GGYRCC 1 cut(s) 165
BbvI GCAGC 1 cut(s) 65
BcgI CGANNNNNNTGC 2 cut(s) 60, 94
BfaI CTAG 1 cut(s) 203
BfmI CTRYAG 1 cut(s) 128
BisI GCNGC 1 cut(s) 79
BlsI GCNGC 1 cut(s) 80
Bme18I GGWCC 2 cut(s) 84, 96
BmgT120I GGNCC 3 cut(s) 67, 84, 96
BmiI GGNNCC 1 cut(s) 167
BsaWI WCCGGW 1 cut(s) 106
Bsc4I CCNNNNNNNGG 1 cut(s) 93
Bse1I ACTGG 1 cut(s) 99
BseGI GGATG 2 cut(s) 28, 53
BseLI CCNNNNNNNGG 1 cut(s) 93
BseNI ACTGG 1 cut(s) 99
BseSI GKGCMC 1 cut(s) 170
BseXI GCAGC 1 cut(s) 65
BshFI GGCC 1 cut(s) 69
BshNI GGYRCC 1 cut(s) 165
BsiSI CCGG 2 cut(s) 107, 207
BslI CCNNNNNNNGG 1 cut(s) 93
BsnI GGCC 1 cut(s) 69
Bsp1286I GDGCHC 1 cut(s) 170
Bsp143I GATC 2 cut(s) 25, 124
BspACI CCGC 1 cut(s) 170
BspANI GGCC 1 cut(s) 69
BspLI GGNNCC 1 cut(s) 167
BspMAI CTGCAG 1 cut(s) 132
BspPI GGATC 1 cut(s) 132
BspT107I GGYRCC 1 cut(s) 165
BsrBI CCGCTC 1 cut(s) 172
BsrI ACTGG 1 cut(s) 99
BssMI GATC 2 cut(s) 25, 124
BstC8I GCNNGC 1 cut(s) 170
BstENI CCTNNNNNAGG 1 cut(s) 91
BstF5I GGATG 2 cut(s) 28, 53
BstKTI GATC 2 cut(s) 28, 127
BstMBI GATC 2 cut(s) 25, 124
BstMWI GCNNNNNNNGC 1 cut(s) 75
BstSFI CTRYAG 1 cut(s) 128
BstSLI GKGCMC 1 cut(s) 170
BstV1I GCAGC 1 cut(s) 65
BstX2I RGATCY 1 cut(s) 124
BstXI CCANNNNNNTGG 1 cut(s) 64
BstYI RGATCY 1 cut(s) 124
BsuRI GGCC 1 cut(s) 69
BtsCI GGATG 2 cut(s) 28, 53
Cac8I GCNNGC 1 cut(s) 170
Cfr13I GGNCC 3 cut(s) 67, 84, 96
CviAII CATG 1 cut(s) 58
CviJI RGCY 5 cut(s) 49, 69, 141, 191, 206
CviKI_1 RGCY 5 cut(s) 49, 69, 141, 191, 206
DpnI GATC 2 cut(s) 27, 126
DpnII GATC 2 cut(s) 25, 124
Eco47I GGWCC 2 cut(s) 84, 96
EcoNI CCTNNNNNAGG 1 cut(s) 91
FaeI CATG 1 cut(s) 61
FaiI YATR 2 cut(s) 17, 59
FalI AAGNNNNNCTT 1 cut(s) 217
FatI CATG 1 cut(s) 57
FauI CCCGC 1 cut(s) 177
Fnu4HI GCNGC 1 cut(s) 79
FokI GGATG 2 cut(s) 15, 40
Fsp4HI GCNGC 1 cut(s) 79
FspBI CTAG 1 cut(s) 203
GluI GCNGC 1 cut(s) 79
HaeIII GGCC 1 cut(s) 69
HapII CCGG 2 cut(s) 107, 207
Hin1II CATG 1 cut(s) 61
HincII GTYRAC 1 cut(s) 231
HindII GTYRAC 1 cut(s) 231
HinfI GANTC 1 cut(s) 196
HpaII CCGG 2 cut(s) 107, 207
Hpy166II GTNNAC 1 cut(s) 231
Hpy188I TCNGA 2 cut(s) 46, 195
Hpy188III TCNNGA 1 cut(s) 32
Hpy8I GTNNAC 1 cut(s) 231
HpyAV CCTTC 1 cut(s) 185
HpyCH4V TGCA 1 cut(s) 130
HpyF10VI GCNNNNNNNGC 1 cut(s) 75
Hsp92II CATG 1 cut(s) 61
Kzo9I GATC 2 cut(s) 25, 124
LmnI GCTCC 1 cut(s) 177
LpnPI CCDG 7 cut(s) 45, 67, 79, 112, 120, 148, 220
Lsp1109I GCAGC 1 cut(s) 65
MaeI CTAG 1 cut(s) 203
MalI GATC 2 cut(s) 27, 126
MbiI CCGCTC 1 cut(s) 172
MboI GATC 2 cut(s) 25, 124
MboII GAAGA 1 cut(s) 170
MflI RGATCY 1 cut(s) 124
MhlI GDGCHC 1 cut(s) 170
MluCI AATT 1 cut(s) 38
MnlI CCTC 1 cut(s) 97
MroXI GAANNNNTTC 1 cut(s) 220
MslI CAYNNNNRTG 1 cut(s) 58
MspI CCGG 2 cut(s) 107, 207
MwoI GCNNNNNNNGC 1 cut(s) 75
NdeII GATC 2 cut(s) 25, 124
NlaIII CATG 1 cut(s) 61
NlaIV GGNNCC 1 cut(s) 167
PdmI GAANNNNTTC 1 cut(s) 220
PfeI GAWTC 1 cut(s) 196
PkrI GCNGC 1 cut(s) 80
PspN4I GGNNCC 1 cut(s) 167
PspPI GGNCC 3 cut(s) 67, 84, 96
PstI CTGCAG 1 cut(s) 132
PsuI RGATCY 1 cut(s) 124
RseI CAYNNNNRTG 1 cut(s) 58
SatI GCNGC 1 cut(s) 79
Sau3AI GATC 2 cut(s) 25, 124
Sau96I GGNCC 3 cut(s) 67, 84, 96
SduI GDGCHC 1 cut(s) 170
SetI ASST 6 cut(s) 51, 89, 98, 143, 167, 230
SfcI CTRYAG 1 cut(s) 128
SinI GGWCC 2 cut(s) 84, 96
SmiMI CAYNNNNRTG 1 cut(s) 58
Sse9I AATT 1 cut(s) 38
SsiI CCGC 1 cut(s) 170
SspI AATATT 1 cut(s) 221
SspMI CTAG 1 cut(s) 203
TasI AATT 1 cut(s) 38
TfiI GAWTC 1 cut(s) 196
TseI GCWGC 1 cut(s) 78
TspDTI ATGAA 3 cut(s) 17, 42, 143
VpaK11BI GGWCC 2 cut(s) 84, 96
XagI CCTNNNNNAGG 1 cut(s) 91
XapI RAATTY 1 cut(s) 38
XmnI GAANNNNTTC 1 cut(s) 220
XspI CTAG 1 cut(s) 203
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.