Rroxscaffold_5G00387740

No description available

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
Physical Location & Seq
Reverse (-)
66377684 .. 66378636
953 bp
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UTR
Exon/CDS
Intron
Rroxscaffold_5G00387740.1

Sequence Viewer

Length: 165 bp
ATGAGCCTTCGACTTCTTCATAAAAAATGTTCCACTATGAGTGTAGATCATCCTGACAAAGTTTCAGAGCTTTATTCCATGCGGTTGGGCCGAAAATGCTGCTGGACCTCTTACAGGTCCAGTTTTCCAGTTTTGCTTCTGCAGAAAATTGGACTGATTGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

54

Amino Acids

6.26

Weight (kDa)

9.73

Isoelectric Point (pI)

48.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 82
AfiI CCNNNNNNNGG 1 cut(s) 114
AluBI AGCT 1 cut(s) 70
AluI AGCT 1 cut(s) 70
AoxI GGCC 1 cut(s) 88
ApeKI GCWGC 1 cut(s) 99
ArsI GACNNNNNNTTYG 1 cut(s) 144
AspS9I GGNCC 3 cut(s) 88, 105, 117
AvaII GGWCC 2 cut(s) 105, 117
BbvI GCAGC 1 cut(s) 86
BcgI CGANNNNNNTGC 2 cut(s) 81, 115
BfmI CTRYAG 1 cut(s) 140
BisI GCNGC 1 cut(s) 100
BlsI GCNGC 1 cut(s) 101
Bme18I GGWCC 2 cut(s) 105, 117
BmgT120I GGNCC 3 cut(s) 88, 105, 117
Bsc4I CCNNNNNNNGG 1 cut(s) 114
Bse1I ACTGG 2 cut(s) 120, 128
BseGI GGATG 1 cut(s) 49
BseLI CCNNNNNNNGG 1 cut(s) 114
BseNI ACTGG 2 cut(s) 120, 128
BseXI GCAGC 1 cut(s) 86
BshFI GGCC 1 cut(s) 90
BslI CCNNNNNNNGG 1 cut(s) 114
BsnI GGCC 1 cut(s) 90
Bsp143I GATC 1 cut(s) 46
BspACI CCGC 1 cut(s) 82
BspANI GGCC 1 cut(s) 90
BspMAI CTGCAG 1 cut(s) 144
BsrI ACTGG 2 cut(s) 120, 128
BssMI GATC 1 cut(s) 46
BstENI CCTNNNNNAGG 1 cut(s) 112
BstF5I GGATG 1 cut(s) 49
BstKTI GATC 1 cut(s) 49
BstMBI GATC 1 cut(s) 46
BstMWI GCNNNNNNNGC 1 cut(s) 96
BstSFI CTRYAG 1 cut(s) 140
BstV1I GCAGC 1 cut(s) 86
BstXI CCANNNNNNTGG 1 cut(s) 85
BsuRI GGCC 1 cut(s) 90
BtsCI GGATG 1 cut(s) 49
Cfr13I GGNCC 3 cut(s) 88, 105, 117
CviAII CATG 1 cut(s) 79
CviJI RGCY 3 cut(s) 6, 70, 90
CviKI_1 RGCY 3 cut(s) 6, 70, 90
DpnI GATC 1 cut(s) 48
DpnII GATC 1 cut(s) 46
Eco47I GGWCC 2 cut(s) 105, 117
EcoNI CCTNNNNNAGG 1 cut(s) 112
FaeI CATG 1 cut(s) 82
FaiI YATR 3 cut(s) 21, 38, 80
FatI CATG 1 cut(s) 78
Fnu4HI GCNGC 1 cut(s) 100
FokI GGATG 1 cut(s) 36
Fsp4HI GCNGC 1 cut(s) 100
GluI GCNGC 1 cut(s) 100
HaeIII GGCC 1 cut(s) 90
Hin1II CATG 1 cut(s) 82
Hpy188I TCNGA 1 cut(s) 67
Hpy188III TCNNGA 1 cut(s) 53
HpyAV CCTTC 1 cut(s) 17
HpyCH4V TGCA 1 cut(s) 142
HpyF10VI GCNNNNNNNGC 1 cut(s) 96
Hsp92II CATG 1 cut(s) 82
Kzo9I GATC 1 cut(s) 46
LpnPI CCDG 5 cut(s) 66, 88, 100, 133, 141
Lsp1109I GCAGC 1 cut(s) 86
MalI GATC 1 cut(s) 48
MboI GATC 1 cut(s) 46
MboII GAAGA 1 cut(s) 8
MluCI AATT 1 cut(s) 147
MnlI CCTC 1 cut(s) 118
MwoI GCNNNNNNNGC 1 cut(s) 96
NdeII GATC 1 cut(s) 46
NlaIII CATG 1 cut(s) 82
PkrI GCNGC 1 cut(s) 101
PspPI GGNCC 3 cut(s) 88, 105, 117
PstI CTGCAG 1 cut(s) 144
SatI GCNGC 1 cut(s) 100
Sau3AI GATC 1 cut(s) 46
Sau96I GGNCC 3 cut(s) 88, 105, 117
SetI ASST 3 cut(s) 72, 110, 119
SfcI CTRYAG 1 cut(s) 140
SgeI CNNG 6 cut(s) 65, 91, 115, 127, 132, 140
SinI GGWCC 2 cut(s) 105, 117
Sse9I AATT 1 cut(s) 147
SsiI CCGC 1 cut(s) 82
TaqI TCGA 1 cut(s) 10
TasI AATT 1 cut(s) 147
TseI GCWGC 1 cut(s) 99
TspDTI ATGAA 1 cut(s) 8
VpaK11BI GGWCC 2 cut(s) 105, 117
XagI CCTNNNNNAGG 1 cut(s) 112
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.