Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0007516

Physical Location & Seq

Genomic Coordinates Forward (+)

4441101 .. 4442290

Gene Structure 1190 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G005320.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 738 bp

ATGGTTATCCGGGTCTTTACGGTGATCTTACACAGCAAACGAACCGCCCCCAACCGACCCAATGCTTACTCATACAGTGTTATCATCAAGGCTCTGGCTGCAGAACCTGGGTTTGTCAAGCTTGCCATGCATGACATGCTTAAGATCATGACAAAGGGAATGCATCCCAATGCCAAGACCTATGCTACCGTGTTCGACGCCTTTGCTCGGAGGAGGGAGGAAGAAGAAGTTGATAATGATGATGATGATAAGGTGGAGGAGGAGAACGTGAAGGAGTATGTGAAGCTAATGAAAGCAAAAGGCTTTAAGCCGAAGAAGGAGGCTGTGAGGGAGGTTCTTACAGCCACAAATACTGAAGCTGCTATGGTTGAAAGGGTCCTCAACTTTCTATTTGAAAACTCAGACGGCGATGTCTTGCAGCAACTCTTGTCCTACAAGATGCAATCCCCTGAGGGTGTCAATGCTGCCAAGCATTTCACCAAGATGTTTGTTGGTTTGATAGATGATGGCCCCTTCAAAGCGGCTATGGAGATCAAGAAGCTGAAGAAGGGTTTGATACCCAATGTGGTCATTCAGACCGGCCTGATGGAGGCCTATGGCATGACATCCTCTGGGATCACCCCCAACCCCTACACCAATGGTGTTCTCATCAGGGCACTCATCTCTGATAACTTCCTCGATGATGCTATTCAGTATTGGCTGGAAATTGGGGAAAAGGGAATGGCGCCCAATCATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

245

Amino Acids

27.49

Weight (kDa)

6.54

Isoelectric Point (pI)

31.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007516)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g06391
rosa_chinensis	RchiOBHm_Chr0c19g0499981 RchiOBHm_Chr2g0121371 RchiOBHm_Chr2g0124851 RchiOBHm_Chr2g0125661 RchiOBHm_Chr2g0131171 RchiOBHm_Chr2g0134161 RchiOBHm_Chr2g0165291 RchiOBHm_Chr3g0462421 RchiOBHm_Chr3g0497621 RchiOBHm_Chr4g0401911 RchiOBHm_Chr5g0067131 RchiOBHm_Chr7g0194981 RchiOBHm_Chr7g0195241 RchiOBHm_Chr7g0200621
rosa_laevigata	RLG00000025358
rosa_multiflora	Rmu_sc0000215.1_g000033 Rmu_sc0010428.1_g000007 Rmu_sc0016199.1_g000006
rosa_roxburghii	Rroxscaffold_5G00343890 Rroxscaffold_5G00387740 Rroxscaffold_6G00424250
rosa_rugosa	Rorug02G0437900
rosa_samantha	Rh3DG069600
rosa_wichuraiana	Rw3G005320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	410
AccB1I	GGYRCC	1 cut(s)	724
AciI	CCGC	2 cut(s)	45, 521
AclWI	GGATC	1 cut(s)	623
AcuI	CTGAAG	2 cut(s)	375, 563
AcyI	GRCGYC	2 cut(s)	198, 725
AfiI	CCNNNNNNNGG	2 cut(s)	207, 589
AflII	CTTAAG	1 cut(s)	140
AgsI	TTSAA	3 cut(s)	371, 395, 517
AjnI	CCWGG	1 cut(s)	106
AluBI	AGCT	4 cut(s)	121, 286, 359, 541
AluI	AGCT	4 cut(s)	121, 286, 359, 541
AlwI	GGATC	1 cut(s)	623
AlwNI	CAGNNNCTG	1 cut(s)	107
AoxI	GGCC	3 cut(s)	508, 580, 591
ApeKI	GCWGC	4 cut(s)	98, 359, 418, 464
AspLEI	GCGC	1 cut(s)	727
AspS9I	GGNCC	2 cut(s)	376, 509
AsuC2I	CCSGG	1 cut(s)	11
AsuHPI	GGTGA	3 cut(s)	34, 469, 610
AvaII	GGWCC	1 cut(s)	376
AxyI	CCTNAGG	1 cut(s)	450
BaeGI	GKGCMC	1 cut(s)	658
BanI	GGYRCC	1 cut(s)	724
BbvI	GCAGC	4 cut(s)	85, 346, 430, 451
BccI	CCATC	2 cut(s)	500, 580
BceAI	ACGGC	1 cut(s)	421
BcgI	CGANNNNNNTGC	2 cut(s)	185, 219
BciT130I	CCWGG	1 cut(s)	108
BcnI	CCSGG	1 cut(s)	11
BfmI	CTRYAG	1 cut(s)	99
BfoI	RGCGCY	1 cut(s)	728
BfrI	CTTAAG	1 cut(s)	140
BisI	GCNGC	5 cut(s)	99, 360, 419, 465, 522
BlsI	GCNGC	5 cut(s)	100, 361, 420, 466, 523
Bme1390I	CCNGG	2 cut(s)	11, 108
Bme18I	GGWCC	1 cut(s)	376
BmgT120I	GGNCC	2 cut(s)	376, 509
BmiI	GGNNCC	3 cut(s)	377, 511, 726
BmrFI	CCNGG	2 cut(s)	11, 108
BmsI	GCATC	3 cut(s)	172, 429, 673
BpuMI	CCSGG	1 cut(s)	11
BsaHI	GRCGYC	2 cut(s)	198, 725
BsaJI	CCNNGG	1 cut(s)	107
Bsc4I	CCNNNNNNNGG	2 cut(s)	207, 589
Bse118I	RCCGGY	1 cut(s)	578
Bse21I	CCTNAGG	1 cut(s)	450
BseBI	CCWGG	1 cut(s)	108
BseDI	CCNNGG	1 cut(s)	107
BseGI	GGATG	2 cut(s)	163, 605
BseLI	CCNNNNNNNGG	2 cut(s)	207, 589
BseMII	CTCAG	2 cut(s)	414, 441
BseRI	GAGGAG	3 cut(s)	226, 272, 275
BseSI	GKGCMC	1 cut(s)	658
BseXI	GCAGC	4 cut(s)	85, 346, 430, 451
BshFI	GGCC	3 cut(s)	510, 582, 593
BshNI	GGYRCC	1 cut(s)	724
BsiSI	CCGG	2 cut(s)	10, 579
BslI	CCNNNNNNNGG	2 cut(s)	207, 589
BsmI	GAATGC	1 cut(s)	165
BsnI	GGCC	3 cut(s)	510, 582, 593
Bsp1286I	GDGCHC	1 cut(s)	658
Bsp143I	GATC	4 cut(s)	24, 144, 531, 615
BspACI	CCGC	2 cut(s)	45, 521
BspANI	GGCC	3 cut(s)	510, 582, 593
BspCNI	CTCAG	2 cut(s)	413, 442
BspHI	TCATGA	1 cut(s)	147
BspLI	GGNNCC	3 cut(s)	377, 511, 726
BspMAI	CTGCAG	1 cut(s)	103
BspPI	GGATC	1 cut(s)	623
BspT107I	GGYRCC	1 cut(s)	724
BspTI	CTTAAG	1 cut(s)	140
BsrFI	RCCGGY	1 cut(s)	578
BssAI	RCCGGY	1 cut(s)	578
BssECI	CCNNGG	1 cut(s)	107
BssMI	GATC	4 cut(s)	24, 144, 531, 615
BssNI	GRCGYC	2 cut(s)	198, 725
Bst2UI	CCWGG	1 cut(s)	108
Bst4CI	ACNGT	3 cut(s)	22, 77, 190
BstACI	GRCGYC	2 cut(s)	198, 725
BstAFI	CTTAAG	1 cut(s)	140
BstAPI	GCANNNNNTGC	1 cut(s)	136
BstC8I	GCNNGC	1 cut(s)	123
BstDEI	CTNAG	2 cut(s)	400, 450
BstENI	CCTNNNNNAGG	1 cut(s)	587
BstF5I	GGATG	2 cut(s)	163, 605
BstH2I	RGCGCY	1 cut(s)	728
BstHHI	GCGC	1 cut(s)	727
BstKTI	GATC	4 cut(s)	27, 147, 534, 618
BstMBI	GATC	4 cut(s)	24, 144, 531, 615
BstMWI	GCNNNNNNNGC	3 cut(s)	98, 127, 136
BstNI	CCWGG	1 cut(s)	108
BstNSI	RCATGY	1 cut(s)	139
BstSCI	CCNGG	2 cut(s)	9, 106
BstSFI	CTRYAG	1 cut(s)	99
BstSLI	GKGCMC	1 cut(s)	658
BstV1I	GCAGC	4 cut(s)	85, 346, 430, 451
Bsu36I	CCTNAGG	1 cut(s)	450
BsuRI	GGCC	3 cut(s)	510, 582, 593
BtgZI	GCGATG	1 cut(s)	423
BtsCI	GGATG	2 cut(s)	163, 605
BtsIMutI	CAGTG	1 cut(s)	82
Cac8I	GCNNGC	1 cut(s)	123
CaiI	CAGNNNCTG	1 cut(s)	107
CciI	TCATGA	1 cut(s)	147
CfoI	GCGC	1 cut(s)	727
Cfr10I	RCCGGY	1 cut(s)	578
Cfr13I	GGNCC	2 cut(s)	376, 509
CseI	GACGC	1 cut(s)	206
CviAII	CATG	5 cut(s)	127, 131, 136, 148, 601
DdeI	CTNAG	2 cut(s)	400, 450
DinI	GGCGCC	1 cut(s)	726
DpnI	GATC	4 cut(s)	26, 146, 533, 617
DpnII	GATC	4 cut(s)	24, 144, 531, 615
DrdI	GACNNNNNNGTC	1 cut(s)	410
DseDI	GACNNNNNNGTC	1 cut(s)	410
Eco147I	AGGCCT	1 cut(s)	593
Eco47I	GGWCC	1 cut(s)	376
Eco57I	CTGAAG	2 cut(s)	375, 563
Eco81I	CCTNAGG	1 cut(s)	450
EcoNI	CCTNNNNNAGG	1 cut(s)	587
EcoO109I	RGGNCCY	1 cut(s)	376
EcoRII	CCWGG	1 cut(s)	106
EcoT22I	ATGCAT	2 cut(s)	132, 165
EgeI	GGCGCC	1 cut(s)	726
EheI	GGCGCC	1 cut(s)	726
FaeI	CATG	5 cut(s)	130, 134, 139, 151, 604
FatI	CATG	5 cut(s)	126, 130, 135, 147, 600
Fnu4HI	GCNGC	5 cut(s)	99, 360, 419, 465, 522
FokI	GGATG	2 cut(s)	150, 592
Fsp4HI	GCNGC	5 cut(s)	99, 360, 419, 465, 522
GlaI	GCGC	1 cut(s)	726
GluI	GCNGC	5 cut(s)	99, 360, 419, 465, 522
HaeII	RGCGCY	1 cut(s)	728
HaeIII	GGCC	3 cut(s)	510, 582, 593
HapII	CCGG	2 cut(s)	10, 579
HgaI	GACGC	1 cut(s)	206
HhaI	GCGC	1 cut(s)	727
Hin1I	GRCGYC	2 cut(s)	198, 725
Hin1II	CATG	5 cut(s)	130, 134, 139, 151, 604
Hin6I	GCGC	1 cut(s)	725
HinP1I	GCGC	1 cut(s)	725
HindIII	AAGCTT	1 cut(s)	119
HpaII	CCGG	2 cut(s)	10, 579
HphI	GGTGA	3 cut(s)	34, 469, 610
Hpy188I	TCNGA	4 cut(s)	210, 403, 576, 667
Hpy188III	TCNNGA	2 cut(s)	148, 535
Hpy99I	CGWCG	1 cut(s)	200
HpyAV	CCTTC	4 cut(s)	265, 310, 523, 541
HpyCH4III	ACNGT	3 cut(s)	22, 77, 190
HpyCH4IV	ACGT	1 cut(s)	267
HpyCH4V	TGCA	5 cut(s)	101, 130, 163, 418, 442
HpyF10VI	GCNNNNNNNGC	3 cut(s)	98, 127, 136
HpyF3I	CTNAG	2 cut(s)	400, 450
HpySE526I	ACGT	1 cut(s)	267
Hsp92I	GRCGYC	2 cut(s)	198, 725
Hsp92II	CATG	5 cut(s)	130, 134, 139, 151, 604
HspAI	GCGC	1 cut(s)	725
KasI	GGCGCC	1 cut(s)	724
Kzo9I	GATC	4 cut(s)	24, 144, 531, 615
Lsp1109I	GCAGC	4 cut(s)	85, 346, 430, 451
LweI	GCATC	3 cut(s)	172, 429, 673
MaeII	ACGT	1 cut(s)	267
MalI	GATC	4 cut(s)	26, 146, 533, 617
MboI	GATC	4 cut(s)	24, 144, 531, 615
MboII	GAAGA	4 cut(s)	233, 236, 325, 556
MhlI	GDGCHC	1 cut(s)	658
MluCI	AATT	1 cut(s)	705
Mly113I	GGCGCC	1 cut(s)	725
Mph1103I	ATGCAT	2 cut(s)	132, 165
MseI	TTAA	2 cut(s)	141, 306
MslI	CAYNNNNRTG	2 cut(s)	168, 482
MspCI	CTTAAG	1 cut(s)	140
MspI	CCGG	2 cut(s)	10, 579
MspR9I	CCNGG	2 cut(s)	11, 108
Mva1269I	GAATGC	1 cut(s)	165
MvaI	CCWGG	1 cut(s)	108
MwoI	GCNNNNNNNGC	3 cut(s)	98, 127, 136
NarI	GGCGCC	1 cut(s)	725
NciI	CCSGG	1 cut(s)	11
NdeII	GATC	4 cut(s)	24, 144, 531, 615
NlaIII	CATG	5 cut(s)	130, 134, 139, 151, 604
NlaIV	GGNNCC	3 cut(s)	377, 511, 726
NsiI	ATGCAT	2 cut(s)	132, 165
NspI	RCATGY	1 cut(s)	139
PagI	TCATGA	1 cut(s)	147
PceI	AGGCCT	1 cut(s)	593
PctI	GAATGC	1 cut(s)	165
PkrI	GCNGC	5 cut(s)	100, 361, 420, 466, 523
PluTI	GGCGCC	1 cut(s)	728
PpuMI	RGGWCCY	1 cut(s)	376
Psp5II	RGGWCCY	1 cut(s)	376
Psp6I	CCWGG	1 cut(s)	106
PspGI	CCWGG	1 cut(s)	106
PspN4I	GGNNCC	3 cut(s)	377, 511, 726
PspPI	GGNCC	2 cut(s)	376, 509
PspPPI	RGGWCCY	1 cut(s)	376
PstI	CTGCAG	1 cut(s)	103
PstNI	CAGNNNCTG	1 cut(s)	107
RseI	CAYNNNNRTG	2 cut(s)	168, 482
SaqAI	TTAA	2 cut(s)	141, 306
SatI	GCNGC	5 cut(s)	99, 360, 419, 465, 522
Sau3AI	GATC	4 cut(s)	24, 144, 531, 615
Sau96I	GGNCC	2 cut(s)	376, 509
ScrFI	CCNGG	2 cut(s)	11, 108
SduI	GDGCHC	1 cut(s)	658
SetI	ASST	9 cut(s)	109, 123, 182, 255, 270, 288, 336, 361, 543
SfaNI	GCATC	3 cut(s)	172, 429, 673
SfcI	CTRYAG	1 cut(s)	99
SfoI	GGCGCC	1 cut(s)	726
SinI	GGWCC	1 cut(s)	376
SmiMI	CAYNNNNRTG	2 cut(s)	168, 482
SmlI	CTYRAG	1 cut(s)	140
SmoI	CTYRAG	1 cut(s)	140
Sse9I	AATT	1 cut(s)	705
SseBI	AGGCCT	1 cut(s)	593
SsiI	CCGC	2 cut(s)	45, 521
SspDI	GGCGCC	1 cut(s)	724
StuI	AGGCCT	1 cut(s)	593
StyD4I	CCNGG	2 cut(s)	9, 106
TaaI	ACNGT	3 cut(s)	22, 77, 190
TaiI	ACGT	1 cut(s)	270
TaqI	TCGA	2 cut(s)	195, 678
TasI	AATT	1 cut(s)	705
TauI	GCSGC	1 cut(s)	524
Tru1I	TTAA	2 cut(s)	141, 306
Tru9I	TTAA	2 cut(s)	141, 306
TscAI	CASTG	1 cut(s)	82
TseI	GCWGC	4 cut(s)	98, 359, 418, 464
TspDTI	ATGAA	1 cut(s)	305
TspRI	CASTG	1 cut(s)	82
Vha464I	CTTAAG	1 cut(s)	140
VpaK11BI	GGWCC	1 cut(s)	376
XagI	CCTNNNNNAGG	1 cut(s)	587
XceI	RCATGY	1 cut(s)	139
Zsp2I	ATGCAT	2 cut(s)	132, 165

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.