RchiOBHm_Chr2g0125661

No description available

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
Physical Location & Seq
Reverse (-)
39505965 .. 39507287
1323 bp
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UTR
Exon/CDS
Intron
PRQ49775

Sequence Viewer

Length: 192 bp
ATGATTCTTAGGATGTCTAGAATGGATCTGGAAAGTTTCAACTCATTTGAAGTTCATTTTGTCAGTCTGCCACTTCTCCTTCTTTGCCTAGCTCGGTTTCTCCTAGCCGAAGTAGGAAAATGTGCTAAAGTTGACTTTTTAGTGCATTTCCAAGCTTCTCCATCATTTCCTAGCATGACAAGGAAAACATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

63

Amino Acids

7.22

Weight (kDa)

8.84

Isoelectric Point (pI)

39.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 33
AgsI TTSAA 2 cut(s) 40, 50
AluBI AGCT 2 cut(s) 92, 155
AluI AGCT 2 cut(s) 92, 155
AlwI GGATC 1 cut(s) 33
BccI CCATC 1 cut(s) 169
BfaI CTAG 4 cut(s) 18, 89, 104, 171
BseGI GGATG 1 cut(s) 18
Bsp143I GATC 1 cut(s) 25
BspPI GGATC 1 cut(s) 33
BssMI GATC 1 cut(s) 25
BstDEI CTNAG 1 cut(s) 8
BstF5I GGATG 1 cut(s) 18
BstKTI GATC 1 cut(s) 28
BstMBI GATC 1 cut(s) 25
BstX2I RGATCY 1 cut(s) 25
BstYI RGATCY 1 cut(s) 25
BtsCI GGATG 1 cut(s) 18
CviAII CATG 1 cut(s) 175
CviJI RGCY 3 cut(s) 92, 107, 155
CviKI_1 RGCY 3 cut(s) 92, 107, 155
DdeI CTNAG 1 cut(s) 8
DpnI GATC 1 cut(s) 27
DpnII GATC 1 cut(s) 25
FaeI CATG 1 cut(s) 178
FaiI YATR 2 cut(s) 176, 190
FatI CATG 1 cut(s) 174
FokI GGATG 1 cut(s) 25
FspBI CTAG 4 cut(s) 18, 89, 104, 171
Hin1II CATG 1 cut(s) 178
HincII GTYRAC 1 cut(s) 133
HindII GTYRAC 1 cut(s) 133
HindIII AAGCTT 1 cut(s) 153
HinfI GANTC 1 cut(s) 4
Hpy166II GTNNAC 1 cut(s) 133
Hpy188III TCNNGA 2 cut(s) 18, 29
Hpy8I GTNNAC 1 cut(s) 133
HpyAV CCTTC 1 cut(s) 89
HpyCH4V TGCA 1 cut(s) 145
HpyF3I CTNAG 1 cut(s) 8
Hsp92II CATG 1 cut(s) 178
Kzo9I GATC 1 cut(s) 25
LpnPI CCDG 1 cut(s) 14
MaeI CTAG 4 cut(s) 18, 89, 104, 171
MalI GATC 1 cut(s) 27
MboI GATC 1 cut(s) 25
MflI RGATCY 1 cut(s) 25
NdeII GATC 1 cut(s) 25
NlaIII CATG 1 cut(s) 178
PfeI GAWTC 1 cut(s) 4
PsuI RGATCY 1 cut(s) 25
Sau3AI GATC 1 cut(s) 25
SetI ASST 2 cut(s) 94, 157
SgeI CNNG 8 cut(s) 30, 41, 101, 105, 116, 164, 183, 187
SspMI CTAG 4 cut(s) 18, 89, 104, 171
TfiI GAWTC 1 cut(s) 4
TspDTI ATGAA 1 cut(s) 44
XbaI TCTAGA 1 cut(s) 17
XspI CTAG 4 cut(s) 18, 89, 104, 171
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.