Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0010428.1

Orthogroup ID

OG0007516

Physical Location & Seq

Genomic Coordinates Reverse (-)

29557 .. 30801

Gene Structure 1245 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0010428.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 759 bp

atggttatccgggtctgtaccgtgatcttacacagcaaacgaaccgcccccaaccggcccaatgcttacacatacagtgttatcatcaaggctctggctgcagaacctgggtttgtcaagcttgccatgcatgacatgcttgagatgatgacgaagggaattcatcccaatgccaagacctatgctgtcgtgttcgaggcctttgctcggaggagggaggaagaagaagaagaagatgatgatgatgataaggtgaaggagtatgtgaaactaatgaaagcaagaggccttaagccggagaaggaggctgtgagggaggttcttacagccacaaatactgaagctgctatggttgaaagggtcctcaactttctatttgaggactcagacgacgatgtcttgcagcaactcatgtcctccaagatgcaatcccctgagggtgtcaatgctgccaatcatttcacccagatgtttgctggtttgatggatgatggccccttcaaagcggctatggagatcaagaagctgaagaaggggcatgtcatcctctgggatcaccccaacccctacaccaatggtgttctcatcaggacactcatctctgataacttccttgatgatgttattcagtattggctggaaatggggaaaaagagaatggcgcgcaatcattcgacctataaaacactgactaaggcgttgcaagacgcaggtagggaaattgaggagttcacacggcagcttatagcccaactctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

252

Amino Acids

28.85

Weight (kDa)

6.02

Isoelectric Point (pI)

44.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007516)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g06391
rosa_chinensis	RchiOBHm_Chr0c19g0499981 RchiOBHm_Chr2g0121371 RchiOBHm_Chr2g0124851 RchiOBHm_Chr2g0125661 RchiOBHm_Chr2g0131171 RchiOBHm_Chr2g0134161 RchiOBHm_Chr2g0165291 RchiOBHm_Chr3g0462421 RchiOBHm_Chr3g0497621 RchiOBHm_Chr4g0401911 RchiOBHm_Chr5g0067131 RchiOBHm_Chr7g0194981 RchiOBHm_Chr7g0195241 RchiOBHm_Chr7g0200621
rosa_laevigata	RLG00000025358
rosa_multiflora	Rmu_sc0000215.1_g000033 Rmu_sc0010428.1_g000007 Rmu_sc0016199.1_g000006
rosa_roxburghii	Rroxscaffold_5G00343890 Rroxscaffold_5G00387740 Rroxscaffold_6G00424250
rosa_rugosa	Rorug02G0437900
rosa_samantha	Rh3DG069600
rosa_wichuraiana	Rw3G005320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	395
Acc36I	ACCTGC	1 cut(s)	701
AccII	CGCG	1 cut(s)	664
AciI	CCGC	2 cut(s)	45, 506
AclWI	GGATC	1 cut(s)	561
AcsI	RAATTY	1 cut(s)	159
AcuI	CTGAAG	2 cut(s)	360, 548
AfaI	GTAC	1 cut(s)	19
AfiI	CCNNNNNNNGG	3 cut(s)	54, 207, 295
AflII	CTTAAG	1 cut(s)	290
AgsI	TTSAA	2 cut(s)	356, 502
AjnI	CCWGG	1 cut(s)	106
AluBI	AGCT	4 cut(s)	121, 344, 526, 742
AluI	AGCT	4 cut(s)	121, 344, 526, 742
AlwI	GGATC	1 cut(s)	561
AlwNI	CAGNNNCTG	1 cut(s)	107
AoxI	GGCC	4 cut(s)	56, 198, 286, 493
ApeKI	GCWGC	5 cut(s)	98, 344, 403, 449, 739
ApoI	RAATTY	1 cut(s)	159
AspLEI	GCGC	2 cut(s)	664, 666
AspS9I	GGNCC	3 cut(s)	57, 361, 494
AsuC2I	CCSGG	1 cut(s)	11
AsuHPI	GGTGA	3 cut(s)	265, 454, 548
AvaII	GGWCC	1 cut(s)	361
AxyI	CCTNAGG	1 cut(s)	435
BbvI	GCAGC	5 cut(s)	85, 331, 415, 436, 751
BccI	CCATC	2 cut(s)	478, 485
BceAI	ACGGC	1 cut(s)	752
BcgI	CGANNNNNNTGC	2 cut(s)	185, 219
BciT130I	CCWGG	1 cut(s)	108
BcnI	CCSGG	1 cut(s)	11
BfmI	CTRYAG	1 cut(s)	99
BfrI	CTTAAG	1 cut(s)	290
BfuAI	ACCTGC	1 cut(s)	701
BisI	GCNGC	6 cut(s)	99, 345, 404, 450, 507, 740
BlsI	GCNGC	6 cut(s)	100, 346, 405, 451, 508, 741
Bme1390I	CCNGG	2 cut(s)	11, 108
Bme18I	GGWCC	1 cut(s)	361
BmgT120I	GGNCC	3 cut(s)	57, 361, 494
BmiI	GGNNCC	2 cut(s)	362, 496
BmrFI	CCNGG	2 cut(s)	11, 108
BmsI	GCATC	1 cut(s)	414
BpuEI	CTTGAG	1 cut(s)	161
BpuMI	CCSGG	1 cut(s)	11
BsaJI	CCNNGG	1 cut(s)	107
Bsc4I	CCNNNNNNNGG	3 cut(s)	54, 207, 295
Bse118I	RCCGGY	1 cut(s)	54
Bse21I	CCTNAGG	1 cut(s)	435
BseBI	CCWGG	1 cut(s)	108
BseDI	CCNNGG	1 cut(s)	107
BseGI	GGATG	3 cut(s)	163, 493, 543
BseLI	CCNNNNNNNGG	3 cut(s)	54, 207, 295
BseMII	CTCAG	2 cut(s)	399, 426
BsePI	GCGCGC	1 cut(s)	662
BseRI	GAGGAG	2 cut(s)	226, 740
BseXI	GCAGC	5 cut(s)	85, 331, 415, 436, 751
Bsh1236I	CGCG	1 cut(s)	664
BshFI	GGCC	4 cut(s)	58, 200, 288, 495
BsiSI	CCGG	3 cut(s)	10, 55, 296
BslI	CCNNNNNNNGG	3 cut(s)	54, 207, 295
BsnI	GGCC	4 cut(s)	58, 200, 288, 495
Bsp143I	GATC	3 cut(s)	24, 516, 553
BspACI	CCGC	2 cut(s)	45, 506
BspANI	GGCC	4 cut(s)	58, 200, 288, 495
BspCNI	CTCAG	2 cut(s)	398, 427
BspFNI	CGCG	1 cut(s)	664
BspLI	GGNNCC	2 cut(s)	362, 496
BspMAI	CTGCAG	1 cut(s)	103
BspMI	ACCTGC	1 cut(s)	701
BspPI	GGATC	1 cut(s)	561
BspTI	CTTAAG	1 cut(s)	290
BsrFI	RCCGGY	1 cut(s)	54
BssAI	RCCGGY	1 cut(s)	54
BssECI	CCNNGG	1 cut(s)	107
BssHII	GCGCGC	1 cut(s)	662
BssMI	GATC	3 cut(s)	24, 516, 553
Bst2UI	CCWGG	1 cut(s)	108
Bst4CI	ACNGT	2 cut(s)	22, 77
BstAFI	CTTAAG	1 cut(s)	290
BstAPI	GCANNNNNTGC	1 cut(s)	136
BstC8I	GCNNGC	2 cut(s)	123, 664
BstDEI	CTNAG	3 cut(s)	385, 435, 693
BstF5I	GGATG	3 cut(s)	163, 493, 543
BstFNI	CGCG	1 cut(s)	664
BstHHI	GCGC	2 cut(s)	664, 666
BstKTI	GATC	3 cut(s)	27, 519, 556
BstMBI	GATC	3 cut(s)	24, 516, 553
BstMWI	GCNNNNNNNGC	3 cut(s)	98, 127, 136
BstNI	CCWGG	1 cut(s)	108
BstNSI	RCATGY	2 cut(s)	139, 542
BstSCI	CCNGG	2 cut(s)	9, 106
BstSFI	CTRYAG	1 cut(s)	99
BstUI	CGCG	1 cut(s)	664
BstV1I	GCAGC	5 cut(s)	85, 331, 415, 436, 751
Bsu36I	CCTNAGG	1 cut(s)	435
BsuRI	GGCC	4 cut(s)	58, 200, 288, 495
BtsCI	GGATG	3 cut(s)	163, 493, 543
BtsIMutI	CAGTG	2 cut(s)	82, 686
BveI	ACCTGC	1 cut(s)	701
Cac8I	GCNNGC	2 cut(s)	123, 664
CaiI	CAGNNNCTG	1 cut(s)	107
CfoI	GCGC	2 cut(s)	664, 666
Cfr10I	RCCGGY	1 cut(s)	54
Cfr13I	GGNCC	3 cut(s)	57, 361, 494
CseI	GACGC	1 cut(s)	716
Csp6I	GTAC	1 cut(s)	18
CviAII	CATG	5 cut(s)	127, 131, 136, 412, 539
CviQI	GTAC	1 cut(s)	18
DdeI	CTNAG	3 cut(s)	385, 435, 693
DpnI	GATC	3 cut(s)	26, 518, 555
DpnII	GATC	3 cut(s)	24, 516, 553
DrdI	GACNNNNNNGTC	1 cut(s)	395
DseDI	GACNNNNNNGTC	1 cut(s)	395
Eco147I	AGGCCT	2 cut(s)	200, 288
Eco47I	GGWCC	1 cut(s)	361
Eco57I	CTGAAG	2 cut(s)	360, 548
Eco81I	CCTNAGG	1 cut(s)	435
EcoO109I	RGGNCCY	1 cut(s)	361
EcoRI	GAATTC	1 cut(s)	159
EcoRII	CCWGG	1 cut(s)	106
EcoT22I	ATGCAT	1 cut(s)	132
FaeI	CATG	5 cut(s)	130, 134, 139, 415, 542
FatI	CATG	5 cut(s)	126, 130, 135, 411, 538
Fnu4HI	GCNGC	6 cut(s)	99, 345, 404, 450, 507, 740
FokI	GGATG	3 cut(s)	150, 500, 530
Fsp4HI	GCNGC	6 cut(s)	99, 345, 404, 450, 507, 740
GlaI	GCGC	2 cut(s)	663, 665
GluI	GCNGC	6 cut(s)	99, 345, 404, 450, 507, 740
HaeIII	GGCC	4 cut(s)	58, 200, 288, 495
HapII	CCGG	3 cut(s)	10, 55, 296
HgaI	GACGC	1 cut(s)	716
HhaI	GCGC	2 cut(s)	664, 666
Hin1II	CATG	5 cut(s)	130, 134, 139, 415, 542
Hin6I	GCGC	2 cut(s)	662, 664
HinP1I	GCGC	2 cut(s)	662, 664
HindIII	AAGCTT	1 cut(s)	119
HinfI	GANTC	1 cut(s)	383
HpaII	CCGG	3 cut(s)	10, 55, 296
HphI	GGTGA	3 cut(s)	265, 454, 548
Hpy166II	GTNNAC	1 cut(s)	732
Hpy188I	TCNGA	3 cut(s)	210, 388, 604
Hpy188III	TCNNGA	2 cut(s)	520, 589
Hpy8I	GTNNAC	1 cut(s)	732
Hpy99I	CGWCG	1 cut(s)	395
HpyAV	CCTTC	5 cut(s)	148, 250, 295, 508, 526
HpyCH4III	ACNGT	2 cut(s)	22, 77
HpyCH4V	TGCA	5 cut(s)	101, 130, 403, 427, 703
HpyF10VI	GCNNNNNNNGC	3 cut(s)	98, 127, 136
HpyF3I	CTNAG	3 cut(s)	385, 435, 693
Hsp92II	CATG	5 cut(s)	130, 134, 139, 415, 542
HspAI	GCGC	2 cut(s)	662, 664
Kzo9I	GATC	3 cut(s)	24, 516, 553
Lsp1109I	GCAGC	5 cut(s)	85, 331, 415, 436, 751
LweI	GCATC	1 cut(s)	414
MalI	GATC	3 cut(s)	26, 518, 555
MboI	GATC	3 cut(s)	24, 516, 553
MboII	GAAGA	6 cut(s)	233, 236, 239, 242, 245, 541
MluCI	AATT	2 cut(s)	159, 720
MlyI	GAGTC	1 cut(s)	377
Mph1103I	ATGCAT	1 cut(s)	132
MseI	TTAA	1 cut(s)	291
MslI	CAYNNNNRTG	2 cut(s)	168, 467
MspCI	CTTAAG	1 cut(s)	290
MspI	CCGG	3 cut(s)	10, 55, 296
MspR9I	CCNGG	2 cut(s)	11, 108
MvaI	CCWGG	1 cut(s)	108
MvnI	CGCG	1 cut(s)	664
MwoI	GCNNNNNNNGC	3 cut(s)	98, 127, 136
NciI	CCSGG	1 cut(s)	11
NdeII	GATC	3 cut(s)	24, 516, 553
NlaIII	CATG	5 cut(s)	130, 134, 139, 415, 542
NlaIV	GGNNCC	2 cut(s)	362, 496
NsiI	ATGCAT	1 cut(s)	132
NspI	RCATGY	2 cut(s)	139, 542
PauI	GCGCGC	1 cut(s)	662
PceI	AGGCCT	2 cut(s)	200, 288
PflFI	GACNNNGTC	1 cut(s)	395
PkrI	GCNGC	6 cut(s)	100, 346, 405, 451, 508, 741
PleI	GAGTC	1 cut(s)	377
PpsI	GAGTC	1 cut(s)	377
PpuMI	RGGWCCY	1 cut(s)	361
Psp5II	RGGWCCY	1 cut(s)	361
Psp6I	CCWGG	1 cut(s)	106
PspGI	CCWGG	1 cut(s)	106
PspN4I	GGNNCC	2 cut(s)	362, 496
PspPI	GGNCC	3 cut(s)	57, 361, 494
PspPPI	RGGWCCY	1 cut(s)	361
PstI	CTGCAG	1 cut(s)	103
PstNI	CAGNNNCTG	1 cut(s)	107
PsyI	GACNNNGTC	1 cut(s)	395
PteI	GCGCGC	1 cut(s)	662
RsaI	GTAC	1 cut(s)	19
RsaNI	GTAC	1 cut(s)	18
RseI	CAYNNNNRTG	2 cut(s)	168, 467
SaqAI	TTAA	1 cut(s)	291
SatI	GCNGC	6 cut(s)	99, 345, 404, 450, 507, 740
Sau3AI	GATC	3 cut(s)	24, 516, 553
Sau96I	GGNCC	3 cut(s)	57, 361, 494
SchI	GAGTC	1 cut(s)	377
ScrFI	CCNGG	2 cut(s)	11, 108
SfaNI	GCATC	1 cut(s)	414
SfcI	CTRYAG	1 cut(s)	99
SinI	GGWCC	1 cut(s)	361
SmiMI	CAYNNNNRTG	2 cut(s)	168, 467
SmlI	CTYRAG	2 cut(s)	140, 290
SmoI	CTYRAG	2 cut(s)	140, 290
Sse9I	AATT	2 cut(s)	159, 720
SseBI	AGGCCT	2 cut(s)	200, 288
SsiI	CCGC	2 cut(s)	45, 506
StuI	AGGCCT	2 cut(s)	200, 288
StyD4I	CCNGG	2 cut(s)	9, 106
TaaI	ACNGT	2 cut(s)	22, 77
TaqI	TCGA	2 cut(s)	195, 674
TasI	AATT	2 cut(s)	159, 720
TauI	GCSGC	1 cut(s)	509
Tru1I	TTAA	1 cut(s)	291
Tru9I	TTAA	1 cut(s)	291
TscAI	CASTG	2 cut(s)	82, 693
TseI	GCWGC	5 cut(s)	98, 344, 403, 449, 739
TspDTI	ATGAA	2 cut(s)	152, 290
TspRI	CASTG	2 cut(s)	82, 693
Tth111I	GACNNNGTC	1 cut(s)	395
Vha464I	CTTAAG	1 cut(s)	290
VpaK11BI	GGWCC	1 cut(s)	361
XapI	RAATTY	1 cut(s)	159
XceI	RCATGY	2 cut(s)	139, 542
XcmI	CCANNNNNNNNNTGG	1 cut(s)	473
Zsp2I	ATGCAT	1 cut(s)	132

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.