RchiOBHm_Chr2g0121371

No description available

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
Physical Location & Seq
Forward (+)
34262188 .. 34262720
533 bp
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UTR
Exon/CDS
Intron
PRQ49391

Sequence Viewer

Length: 240 bp
ATGTTTTTGGGTGATGATGATGATGGATTTCCTACTCATTTACTTCAATTTTATCTCCACCGAAAGTTTAGATTCTGCCCAAGACTTCTTCATAACAAATATTCCCCCATGAATGTAGATTACCCTGGTAAAATTTCAGATCTTTTAGAAAGGTATTTTGGCCGGAAATGCTTCCAGAATACGTTCAGGTCCGACTTTCAGTTTTCGTCTTTTAGTCAGAACTTTGGACCGATCTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

79

Amino Acids

9.54

Weight (kDa)

8.69

Isoelectric Point (pI)

35.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 160
AcsI RAATTY 1 cut(s) 132
AgsI TTSAA 1 cut(s) 47
AjnI CCWGG 1 cut(s) 124
AjuI GAANNNNNNNTTGG 2 cut(s) 141, 173
AoxI GGCC 1 cut(s) 160
ApoI RAATTY 1 cut(s) 132
ArsI GACNNNNNNTTYG 1 cut(s) 219
Asp700I GAANNNNTTC 2 cut(s) 170, 182
AspS9I GGNCC 2 cut(s) 189, 227
AsuHPI GGTGA 1 cut(s) 23
AvaII GGWCC 2 cut(s) 189, 227
BccI CCATC 1 cut(s) 17
BciT130I CCWGG 1 cut(s) 126
BglII AGATCT 1 cut(s) 139
Bme1390I CCNGG 1 cut(s) 126
Bme18I GGWCC 2 cut(s) 189, 227
BmgT120I GGNCC 2 cut(s) 189, 227
BmrFI CCNGG 1 cut(s) 126
BsaJI CCNNGG 1 cut(s) 124
BseBI CCWGG 1 cut(s) 126
BseDI CCNNGG 1 cut(s) 124
BshFI GGCC 1 cut(s) 162
BsiSI CCGG 1 cut(s) 163
BsnI GGCC 1 cut(s) 162
Bsp143I GATC 2 cut(s) 139, 231
BspANI GGCC 1 cut(s) 162
BssECI CCNNGG 1 cut(s) 124
BssMI GATC 2 cut(s) 139, 231
Bst2UI CCWGG 1 cut(s) 126
BstKTI GATC 2 cut(s) 142, 234
BstMBI GATC 2 cut(s) 139, 231
BstMWI GCNNNNNNNGC 1 cut(s) 168
BstNI CCWGG 1 cut(s) 126
BstSCI CCNGG 1 cut(s) 124
BstX2I RGATCY 1 cut(s) 139
BstYI RGATCY 1 cut(s) 139
BsuRI GGCC 1 cut(s) 162
Cfr13I GGNCC 2 cut(s) 189, 227
CviAII CATG 1 cut(s) 109
CviJI RGCY 1 cut(s) 162
CviKI_1 RGCY 1 cut(s) 162
DpnI GATC 2 cut(s) 141, 233
DpnII GATC 2 cut(s) 139, 231
EaeI YGGCCR 1 cut(s) 160
Eco47I GGWCC 2 cut(s) 189, 227
EcoRII CCWGG 1 cut(s) 124
FaeI CATG 1 cut(s) 112
FaiI YATR 2 cut(s) 93, 110
FatI CATG 1 cut(s) 108
HaeIII GGCC 1 cut(s) 162
HapII CCGG 1 cut(s) 163
Hin1II CATG 1 cut(s) 112
HinfI GANTC 1 cut(s) 72
HpaII CCGG 1 cut(s) 163
HphI GGTGA 1 cut(s) 23
Hpy188I TCNGA 3 cut(s) 139, 193, 219
Hpy188III TCNNGA 1 cut(s) 175
HpyCH4IV ACGT 1 cut(s) 182
HpyF10VI GCNNNNNNNGC 1 cut(s) 168
HpySE526I ACGT 1 cut(s) 182
Hsp92II CATG 1 cut(s) 112
Kzo9I GATC 2 cut(s) 139, 231
LpnPI CCDG 5 cut(s) 111, 138, 172, 176, 188
MaeII ACGT 1 cut(s) 182
MalI GATC 2 cut(s) 141, 233
MboI GATC 2 cut(s) 139, 231
MboII GAAGA 1 cut(s) 80
MflI RGATCY 1 cut(s) 139
MluCI AATT 2 cut(s) 47, 132
MmeI TCCRAC 1 cut(s) 216
MroXI GAANNNNTTC 2 cut(s) 170, 182
MspI CCGG 1 cut(s) 163
MspR9I CCNGG 1 cut(s) 126
MvaI CCWGG 1 cut(s) 126
MwoI GCNNNNNNNGC 1 cut(s) 168
NdeII GATC 2 cut(s) 139, 231
NlaIII CATG 1 cut(s) 112
PdmI GAANNNNTTC 2 cut(s) 170, 182
PfeI GAWTC 1 cut(s) 72
Psp6I CCWGG 1 cut(s) 124
PspGI CCWGG 1 cut(s) 124
PspPI GGNCC 2 cut(s) 189, 227
PsuI RGATCY 1 cut(s) 139
Sau3AI GATC 2 cut(s) 139, 231
Sau96I GGNCC 2 cut(s) 189, 227
ScrFI CCNGG 1 cut(s) 126
SetI ASST 3 cut(s) 155, 185, 191
SgeI CNNG 7 cut(s) 93, 121, 137, 138, 175, 187, 199
SinI GGWCC 2 cut(s) 189, 227
Sse9I AATT 2 cut(s) 47, 132
SspI AATATT 1 cut(s) 101
StyD4I CCNGG 1 cut(s) 124
TaiI ACGT 1 cut(s) 185
TasI AATT 2 cut(s) 47, 132
TfiI GAWTC 1 cut(s) 72
TspDTI ATGAA 2 cut(s) 80, 125
VpaK11BI GGWCC 2 cut(s) 189, 227
XapI RAATTY 1 cut(s) 132
XmnI GAANNNNTTC 2 cut(s) 170, 182
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.