Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000215.1

Orthogroup ID

OG0007516

Physical Location & Seq

Genomic Coordinates Forward (+)

142504 .. 144447

Gene Structure 1944 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000215.1_g000033.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 480 bp

atggattatgaacttgttgatgttgatgatgaatggaatagtgatgatgatatgatgcttccttggctaattttgagtggtagcaatggagtttatggtggtggtgatagagtttatggtggtggaagatgcttccttaaactgaatcttcaccgagacttcggaattggccttcgacttcttcataccaaatgttccttgataagcgtagatcatggtggtaaaatttcggagattatttcactgtggtttggcctgaaatactgccggaatccatacaggtcctgtgttgcggtaatcaaccacaacatcccaactgaactaatggccgagatgaagagtgtggttgcatcttttcttgatctccccatggagattaagaagaagaacgtcggaccagtcgttaggactggttttatacccctactgagatcaaccctctgtatcaaacattggggtttacgacttcggctcttctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0006082 GO:0006629 GO:0006720 GO:0006721 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009056 GO:0009058 GO:0009314 GO:0009416 GO:0009628 GO:0009685 GO:0009686 GO:0009719 GO:0009725 GO:0009739 GO:0009740 GO:0009755 GO:0009850 GO:0009852 GO:0009987 GO:0010033 GO:0010476 GO:0010817 GO:0016053 GO:0016101 GO:0016102 GO:0016114 GO:0016491 GO:0016705 GO:0016706 GO:0016707 GO:0019752 GO:0023052 GO:0032870 GO:0033993 GO:0042221 GO:0042445 GO:0042446 GO:0042447 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0046394 GO:0050789 GO:0050794 GO:0050896 GO:0051213 GO:0051716 GO:0055114 GO:0065007 GO:0065008 GO:0070887 GO:0071229 GO:0071310 GO:0071370 GO:0071396 GO:0071495 GO:0071704 GO:1901576 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

159

Amino Acids

18.0

Weight (kDa)

8.29

Isoelectric Point (pI)

26.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007516)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g06391
rosa_chinensis	RchiOBHm_Chr0c19g0499981 RchiOBHm_Chr2g0121371 RchiOBHm_Chr2g0124851 RchiOBHm_Chr2g0125661 RchiOBHm_Chr2g0131171 RchiOBHm_Chr2g0134161 RchiOBHm_Chr2g0165291 RchiOBHm_Chr3g0462421 RchiOBHm_Chr3g0497621 RchiOBHm_Chr4g0401911 RchiOBHm_Chr5g0067131 RchiOBHm_Chr7g0194981 RchiOBHm_Chr7g0195241 RchiOBHm_Chr7g0200621
rosa_laevigata	RLG00000025358
rosa_multiflora	Rmu_sc0000215.1_g000033 Rmu_sc0010428.1_g000007 Rmu_sc0016199.1_g000006
rosa_roxburghii	Rroxscaffold_5G00343890 Rroxscaffold_5G00387740 Rroxscaffold_6G00424250
rosa_rugosa	Rorug02G0437900
rosa_samantha	Rh3DG069600
rosa_wichuraiana	Rw3G005320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	293
AcoI	YGGCCR	1 cut(s)	327
AcsI	RAATTY	1 cut(s)	225
Alw26I	GTCTC	1 cut(s)	150
AlwNI	CAGNNNCTG	1 cut(s)	285
AoxI	GGCC	3 cut(s)	169, 253, 327
ApoI	RAATTY	1 cut(s)	225
AspS9I	GGNCC	2 cut(s)	282, 395
AsuHPI	GGTGA	2 cut(s)	116, 143
AvaII	GGWCC	2 cut(s)	282, 395
BcoDI	GTCTC	1 cut(s)	150
Bme18I	GGWCC	2 cut(s)	282, 395
BmgT120I	GGNCC	2 cut(s)	282, 395
BmsI	GCATC	3 cut(s)	45, 119, 359
BsaJI	CCNNGG	2 cut(s)	62, 369
Bse1I	ACTGG	2 cut(s)	398, 415
Bse3DI	GCAATG	1 cut(s)	91
BseDI	CCNNGG	2 cut(s)	62, 369
BseGI	GGATG	1 cut(s)	309
BseMI	GCAATG	1 cut(s)	91
BseMII	CTCAG	1 cut(s)	419
BseNI	ACTGG	2 cut(s)	398, 415
BshFI	GGCC	3 cut(s)	171, 255, 329
BsiSI	CCGG	1 cut(s)	268
BsmAI	GTCTC	1 cut(s)	150
BsnI	GGCC	3 cut(s)	171, 255, 329
Bsp143I	GATC	3 cut(s)	211, 361, 431
Bsp19I	CCATGG	1 cut(s)	369
BspACI	CCGC	1 cut(s)	293
BspANI	GGCC	3 cut(s)	171, 255, 329
BspCNI	CTCAG	1 cut(s)	420
BsrDI	GCAATG	1 cut(s)	91
BsrI	ACTGG	2 cut(s)	398, 415
BssECI	CCNNGG	2 cut(s)	62, 369
BssMI	GATC	3 cut(s)	211, 361, 431
BssT1I	CCWWGG	2 cut(s)	62, 369
Bst4CI	ACNGT	1 cut(s)	246
Bst6I	CTCTTC	1 cut(s)	332
BstDEI	CTNAG	1 cut(s)	428
BstDSI	CCRYGG	1 cut(s)	369
BstF5I	GGATG	1 cut(s)	309
BstKTI	GATC	3 cut(s)	214, 364, 434
BstMAI	GTCTC	1 cut(s)	150
BstMBI	GATC	3 cut(s)	211, 361, 431
BstMWI	GCNNNNNNNGC	1 cut(s)	64
BsuRI	GGCC	3 cut(s)	171, 255, 329
BtgI	CCRYGG	1 cut(s)	369
BtsCI	GGATG	1 cut(s)	309
BtsIMutI	CAGTG	1 cut(s)	242
CaiI	CAGNNNCTG	1 cut(s)	285
Cfr13I	GGNCC	2 cut(s)	282, 395
CviAII	CATG	2 cut(s)	215, 370
CviJI	RGCY	5 cut(s)	67, 171, 255, 329, 472
CviKI_1	RGCY	5 cut(s)	67, 171, 255, 329, 472
DdeI	CTNAG	1 cut(s)	428
DpnI	GATC	3 cut(s)	213, 363, 433
DpnII	GATC	3 cut(s)	211, 361, 431
EaeI	YGGCCR	1 cut(s)	327
Eam1104I	CTCTTC	1 cut(s)	332
EarI	CTCTTC	1 cut(s)	332
Eco130I	CCWWGG	2 cut(s)	62, 369
Eco47I	GGWCC	2 cut(s)	282, 395
EcoO109I	RGGNCCY	1 cut(s)	282
EcoT14I	CCWWGG	2 cut(s)	62, 369
ErhI	CCWWGG	2 cut(s)	62, 369
FaeI	CATG	2 cut(s)	218, 373
FaiI	YATR	9 cut(s)	9, 53, 96, 117, 186, 216, 277, 371, 419
FatI	CATG	2 cut(s)	214, 369
FokI	GGATG	1 cut(s)	296
HaeIII	GGCC	3 cut(s)	171, 255, 329
HapII	CCGG	1 cut(s)	268
Hin1II	CATG	2 cut(s)	218, 373
HinfI	GANTC	2 cut(s)	145, 271
HpaII	CCGG	1 cut(s)	268
HphI	GGTGA	2 cut(s)	116, 143
Hpy166II	GTNNAC	1 cut(s)	461
Hpy188I	TCNGA	3 cut(s)	164, 232, 395
Hpy188III	TCNNGA	1 cut(s)	359
Hpy8I	GTNNAC	1 cut(s)	461
Hpy99I	CGWCG	1 cut(s)	395
HpyAV	CCTTC	1 cut(s)	182
HpyCH4III	ACNGT	1 cut(s)	246
HpyCH4IV	ACGT	1 cut(s)	390
HpyCH4V	TGCA	1 cut(s)	350
HpyF10VI	GCNNNNNNNGC	1 cut(s)	64
HpyF3I	CTNAG	1 cut(s)	428
HpySE526I	ACGT	1 cut(s)	390
Hsp92II	CATG	2 cut(s)	218, 373
Kzo9I	GATC	3 cut(s)	211, 361, 431
LpnPI	CCDG	6 cut(s)	265, 269, 281, 298, 396, 411
LweI	GCATC	3 cut(s)	45, 119, 359
MaeII	ACGT	1 cut(s)	390
MalI	GATC	3 cut(s)	213, 363, 433
MboI	GATC	3 cut(s)	211, 361, 431
MboII	GAAGA	7 cut(s)	138, 140, 173, 349, 394, 397, 466
MluCI	AATT	3 cut(s)	69, 165, 225
MmeI	TCCRAC	1 cut(s)	373
MnlI	CCTC	1 cut(s)	449
MseI	TTAA	2 cut(s)	138, 378
MspI	CCGG	1 cut(s)	268
MwoI	GCNNNNNNNGC	1 cut(s)	64
NcoI	CCATGG	1 cut(s)	369
NdeII	GATC	3 cut(s)	211, 361, 431
NlaIII	CATG	2 cut(s)	218, 373
NmeAIII	GCCGAG	1 cut(s)	355
PcsI	WCGNNNNNNNCGW	1 cut(s)	399
PfeI	GAWTC	2 cut(s)	145, 271
PpuMI	RGGWCCY	1 cut(s)	282
Psp5II	RGGWCCY	1 cut(s)	282
PspPI	GGNCC	2 cut(s)	282, 395
PspPPI	RGGWCCY	1 cut(s)	282
PstNI	CAGNNNCTG	1 cut(s)	285
SaqAI	TTAA	2 cut(s)	138, 378
Sau3AI	GATC	3 cut(s)	211, 361, 431
Sau96I	GGNCC	2 cut(s)	282, 395
SetI	ASST	2 cut(s)	284, 393
SfaNI	GCATC	3 cut(s)	45, 119, 359
SinI	GGWCC	2 cut(s)	282, 395
Sse9I	AATT	3 cut(s)	69, 165, 225
SsiI	CCGC	1 cut(s)	293
StyI	CCWWGG	2 cut(s)	62, 369
TaaI	ACNGT	1 cut(s)	246
TaiI	ACGT	1 cut(s)	393
TaqI	TCGA	1 cut(s)	175
TasI	AATT	3 cut(s)	69, 165, 225
TfiI	GAWTC	2 cut(s)	145, 271
Tru1I	TTAA	2 cut(s)	138, 378
Tru9I	TTAA	2 cut(s)	138, 378
TscAI	CASTG	1 cut(s)	249
TspDTI	ATGAA	4 cut(s)	24, 45, 173, 350
TspRI	CASTG	1 cut(s)	249
VpaK11BI	GGWCC	2 cut(s)	282, 395
XapI	RAATTY	1 cut(s)	225

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.