RchiOBHm_Chr2g0124851

No description available

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
Physical Location & Seq
Forward (+)
38319548 .. 38320019
472 bp
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UTR
Exon/CDS
Intron
PRQ49700

Sequence Viewer

Length: 237 bp
ATGAGCCTTGGACTTCTTCATAAAAAATGTTCCACTATGAGTGTAGATCATCCTGACAAATTTTCAGAGCTTTATTCCATGTGGTTGGGCCGGAAATGCTGCTGGACCTCTTACAGAATGGATCTGGAGAGTTTCAGCTCATTTCAAGTTCATTTGGTCAGGTGGCCGCTCCTTCTTCCTTGCTTGGCTCTGATTCTCCTAGCCGGAGTAAGAAAATATTCAAGGTTGACTTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

78

Amino Acids

9.14

Weight (kDa)

9.3

Isoelectric Point (pI)

44.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 169
AciI CCGC 1 cut(s) 167
AclWI GGATC 1 cut(s) 129
AcoI YGGCCR 1 cut(s) 164
AcsI RAATTY 1 cut(s) 59
AgsI TTSAA 2 cut(s) 146, 222
AluBI AGCT 2 cut(s) 70, 138
AluI AGCT 2 cut(s) 70, 138
AlwI GGATC 1 cut(s) 129
AoxI GGCC 2 cut(s) 88, 164
ApeKI GCWGC 1 cut(s) 99
ApoI RAATTY 1 cut(s) 59
Asp700I GAANNNNTTC 1 cut(s) 217
AspS9I GGNCC 2 cut(s) 88, 105
AvaII GGWCC 1 cut(s) 105
BbvI GCAGC 1 cut(s) 86
BfaI CTAG 1 cut(s) 200
BisI GCNGC 2 cut(s) 100, 167
BlsI GCNGC 2 cut(s) 101, 168
Bme18I GGWCC 1 cut(s) 105
BmgT120I GGNCC 2 cut(s) 88, 105
BpmI CTGGAG 1 cut(s) 146
BsaJI CCNNGG 1 cut(s) 7
BseDI CCNNGG 1 cut(s) 7
BseGI GGATG 1 cut(s) 49
BseXI GCAGC 1 cut(s) 86
BshFI GGCC 2 cut(s) 90, 166
BsiSI CCGG 2 cut(s) 91, 204
BsnI GGCC 2 cut(s) 90, 166
Bsp143I GATC 2 cut(s) 46, 121
BspACI CCGC 1 cut(s) 167
BspANI GGCC 2 cut(s) 90, 166
BspPI GGATC 1 cut(s) 129
BsrBI CCGCTC 1 cut(s) 169
BssECI CCNNGG 1 cut(s) 7
BssMI GATC 2 cut(s) 46, 121
BssT1I CCWWGG 1 cut(s) 7
BstF5I GGATG 1 cut(s) 49
BstKTI GATC 2 cut(s) 49, 124
BstMBI GATC 2 cut(s) 46, 121
BstMWI GCNNNNNNNGC 1 cut(s) 96
BstV1I GCAGC 1 cut(s) 86
BstX2I RGATCY 1 cut(s) 121
BstXI CCANNNNNNTGG 1 cut(s) 85
BstYI RGATCY 1 cut(s) 121
BsuRI GGCC 2 cut(s) 90, 166
BtsCI GGATG 1 cut(s) 49
Cfr13I GGNCC 2 cut(s) 88, 105
CviAII CATG 1 cut(s) 79
CviJI RGCY 7 cut(s) 6, 70, 90, 138, 166, 188, 203
CviKI_1 RGCY 7 cut(s) 6, 70, 90, 138, 166, 188, 203
DpnI GATC 2 cut(s) 48, 123
DpnII GATC 2 cut(s) 46, 121
EaeI YGGCCR 1 cut(s) 164
Eco130I CCWWGG 1 cut(s) 7
Eco47I GGWCC 1 cut(s) 105
EcoT14I CCWWGG 1 cut(s) 7
ErhI CCWWGG 1 cut(s) 7
FaeI CATG 1 cut(s) 82
FaiI YATR 3 cut(s) 21, 38, 80
FalI AAGNNNNNCTT 1 cut(s) 214
FatI CATG 1 cut(s) 78
Fnu4HI GCNGC 2 cut(s) 100, 167
FokI GGATG 1 cut(s) 36
Fsp4HI GCNGC 2 cut(s) 100, 167
FspBI CTAG 1 cut(s) 200
GluI GCNGC 2 cut(s) 100, 167
GsuI CTGGAG 1 cut(s) 146
HaeIII GGCC 2 cut(s) 90, 166
HapII CCGG 2 cut(s) 91, 204
Hin1II CATG 1 cut(s) 82
HincII GTYRAC 1 cut(s) 228
HindII GTYRAC 1 cut(s) 228
HinfI GANTC 1 cut(s) 193
HpaII CCGG 2 cut(s) 91, 204
Hpy166II GTNNAC 1 cut(s) 228
Hpy188I TCNGA 2 cut(s) 67, 192
Hpy188III TCNNGA 2 cut(s) 53, 125
Hpy8I GTNNAC 1 cut(s) 228
HpyAV CCTTC 1 cut(s) 182
HpyF10VI GCNNNNNNNGC 1 cut(s) 96
Hsp92II CATG 1 cut(s) 82
Kzo9I GATC 2 cut(s) 46, 121
LmnI GCTCC 1 cut(s) 174
LpnPI CCDG 6 cut(s) 66, 88, 104, 110, 145, 217
Lsp1109I GCAGC 1 cut(s) 86
MaeI CTAG 1 cut(s) 200
MalI GATC 2 cut(s) 48, 123
MbiI CCGCTC 1 cut(s) 169
MboI GATC 2 cut(s) 46, 121
MboII GAAGA 2 cut(s) 8, 167
MflI RGATCY 1 cut(s) 121
MluCI AATT 1 cut(s) 59
MnlI CCTC 1 cut(s) 118
MroXI GAANNNNTTC 1 cut(s) 217
MspI CCGG 2 cut(s) 91, 204
MwoI GCNNNNNNNGC 1 cut(s) 96
NdeII GATC 2 cut(s) 46, 121
NlaIII CATG 1 cut(s) 82
PdmI GAANNNNTTC 1 cut(s) 217
PfeI GAWTC 1 cut(s) 193
PkrI GCNGC 2 cut(s) 101, 168
PspPI GGNCC 2 cut(s) 88, 105
PsuI RGATCY 1 cut(s) 121
SatI GCNGC 2 cut(s) 100, 167
Sau3AI GATC 2 cut(s) 46, 121
Sau96I GGNCC 2 cut(s) 88, 105
SetI ASST 5 cut(s) 72, 110, 140, 164, 227
SinI GGWCC 1 cut(s) 105
Sse9I AATT 1 cut(s) 59
SsiI CCGC 1 cut(s) 167
SspI AATATT 1 cut(s) 218
SspMI CTAG 1 cut(s) 200
StyI CCWWGG 1 cut(s) 7
TasI AATT 1 cut(s) 59
TauI GCSGC 1 cut(s) 169
TfiI GAWTC 1 cut(s) 193
TseI GCWGC 1 cut(s) 99
TspDTI ATGAA 2 cut(s) 8, 140
VpaK11BI GGWCC 1 cut(s) 105
XapI RAATTY 1 cut(s) 59
XmnI GAANNNNTTC 1 cut(s) 217
XspI CTAG 1 cut(s) 200
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.