RchiOBHm_Chr4g0401911

No description available

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
Physical Location & Seq
Reverse (-)
20308310 .. 20308595
286 bp
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UTR
Exon/CDS
Intron
PRQ37380

Sequence Viewer

Length: 213 bp
ATGATCCTTGGGCTTTCTAGAATGAATCTGGAAAGTTTCAACTCATTTGGAGTTCGGATGGTTAGTCTGCCACTCCTCATTTCTTGTCTAGCTCGCTTTCTCATTGGCTCAATTTCTCCAAGACACGCTTTGTCAGGCCAAAATGCTCATTTTGGGGCCAAACAGCTCATTTCATCATCATCTACTCCAATGTACCTAAAAAATAGAAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

70

Amino Acids

7.68

Weight (kDa)

11.45

Isoelectric Point (pI)

46.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 1 cut(s) 194
AgsI TTSAA 1 cut(s) 40
AluBI AGCT 2 cut(s) 92, 166
AluI AGCT 2 cut(s) 92, 166
AoxI GGCC 2 cut(s) 136, 156
AspS9I GGNCC 1 cut(s) 156
BccI CCATC 1 cut(s) 52
BfaI CTAG 2 cut(s) 18, 89
BmgT120I GGNCC 1 cut(s) 156
BmiI GGNNCC 1 cut(s) 157
BsaJI CCNNGG 1 cut(s) 7
BseDI CCNNGG 1 cut(s) 7
BseGI GGATG 1 cut(s) 63
BseRI GAGGAG 1 cut(s) 65
BshFI GGCC 2 cut(s) 138, 158
BsnI GGCC 2 cut(s) 138, 158
Bsp143I GATC 1 cut(s) 3
BspANI GGCC 2 cut(s) 138, 158
BspLI GGNNCC 1 cut(s) 157
BssECI CCNNGG 1 cut(s) 7
BssMI GATC 1 cut(s) 3
BssT1I CCWWGG 1 cut(s) 7
BstC8I GCNNGC 1 cut(s) 94
BstF5I GGATG 1 cut(s) 63
BstKTI GATC 1 cut(s) 6
BstMBI GATC 1 cut(s) 3
BsuRI GGCC 2 cut(s) 138, 158
BtsCI GGATG 1 cut(s) 63
Cac8I GCNNGC 1 cut(s) 94
Cfr13I GGNCC 1 cut(s) 156
Csp6I GTAC 1 cut(s) 193
CviJI RGCY 6 cut(s) 13, 92, 108, 138, 158, 166
CviKI_1 RGCY 6 cut(s) 13, 92, 108, 138, 158, 166
CviQI GTAC 1 cut(s) 193
DpnI GATC 1 cut(s) 5
DpnII GATC 1 cut(s) 3
Eco130I CCWWGG 1 cut(s) 7
EcoT14I CCWWGG 1 cut(s) 7
ErhI CCWWGG 1 cut(s) 7
FalI AAGNNNNNCTT 2 cut(s) 112, 144
FokI GGATG 1 cut(s) 70
FspBI CTAG 2 cut(s) 18, 89
HaeIII GGCC 2 cut(s) 138, 158
HinfI GANTC 1 cut(s) 25
Hpy188I TCNGA 1 cut(s) 57
Hpy188III TCNNGA 2 cut(s) 18, 29
Kzo9I GATC 1 cut(s) 3
LpnPI CCDG 2 cut(s) 14, 120
MaeI CTAG 2 cut(s) 18, 89
MalI GATC 1 cut(s) 5
MboI GATC 1 cut(s) 3
MluCI AATT 2 cut(s) 111, 208
MnlI CCTC 1 cut(s) 86
NdeII GATC 1 cut(s) 3
NlaIV GGNNCC 1 cut(s) 157
PfeI GAWTC 1 cut(s) 25
PspN4I GGNNCC 1 cut(s) 157
PspPI GGNCC 1 cut(s) 156
RsaI GTAC 1 cut(s) 194
RsaNI GTAC 1 cut(s) 193
Sau3AI GATC 1 cut(s) 3
Sau96I GGNCC 1 cut(s) 156
SetI ASST 3 cut(s) 94, 168, 198
SgeI CNNG 9 cut(s) 20, 30, 41, 96, 101, 105, 132, 137, 147
Sse9I AATT 2 cut(s) 111, 208
SspMI CTAG 2 cut(s) 18, 89
StyI CCWWGG 1 cut(s) 7
TasI AATT 2 cut(s) 111, 208
TfiI GAWTC 1 cut(s) 25
TspDTI ATGAA 2 cut(s) 38, 162
XbaI TCTAGA 1 cut(s) 17
XspI CTAG 2 cut(s) 18, 89
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.